Minor changes to configs or gffread, samtools flagstat and idxstats

emmarousseau · Apr 11, 2024 · 278b59c · 278b59c
1 parent 271108c
commit 278b59c
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/src/gffread/config.vsh.yaml b/src/gffread/config.vsh.yaml
@@ -50,7 +50,6 @@ argument_groups:
         alternatives: -o
         type: file
         direction: output
-        must_exist: false
         required: true
         description: |
           Write the output records into <outfile>.

diff --git a/src/samtools/samtools_flagstat/config.vsh.yaml b/src/samtools/samtools_flagstat/config.vsh.yaml
@@ -27,6 +27,7 @@ argument_groups:
       type: file 
       description: |
         File containing samtools stats output.
+      required: true
       direction: output
       example: output.flagstat
 

diff --git a/src/samtools/samtools_idxstats/config.vsh.yaml b/src/samtools/samtools_idxstats/config.vsh.yaml
@@ -29,7 +29,7 @@ argument_groups:
         description: |
           File containing samtools stats output in tab-delimited format.
         required: true
-        must_exist: false
+        direction: output
         example: output.idxstats
 
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