From d41ce58e53bce7bca3969b5600638ead968dd866 Mon Sep 17 00:00:00 2001 From: elodiegermani1 Date: Thu, 12 Oct 2023 15:01:43 -0400 Subject: [PATCH] New version --- cv.html | 19 +++++++++- files/style.css | 4 +- index.html | 3 +- mediation.html | 97 +++++++++++++++++++++++++++++++++++++++++++++++ projects.html | 5 ++- publications.html | 18 ++++++++- 6 files changed, 137 insertions(+), 9 deletions(-) create mode 100644 mediation.html diff --git a/cv.html b/cv.html index 1bf4a4b..4683cf3 100644 --- a/cv.html +++ b/cv.html @@ -29,7 +29,6 @@

PhD student


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HOME
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PhD student


PROJECTS
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Education

▮ Subject: Mapping the fMRI pipeline space towards more robust pipelines

▮ Analytical variability in neuroimaging, medical image analysis, statistical learning, representative learning...

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Supervised by Camille Maumet & Elisa Fromont.

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    Education

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    Internships

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    Research experience

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      Improving rs-fMRI-derived biomarkers of Parkinson's Disease through analytical variability evaluations

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      Visiting student at Big Data Infrastructures for Neuroinformatics lab, Concordia University and the ORIGAMI lab, McGill University | Montreal (QC), Canada | Aug. 2023 - Nov. 2023

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      ▮ Reproduction and replication of a study using rs-fMRI and machine learning;

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      ▮ Variations in the methodology and data;

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      ▮ Assessment of the effect of these variations in the performance.

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      Supervised by JB Poline & Tristan Glatard.

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    • Evolution of analytical variability with sample size in fMRI data analyses

      Empenn research unit, Univ Rennes, CNRS, Inria, Inserm, IRISA | Rennes, France | Jan. 2021 - Jul. 2021

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      Internships

      ▮ Reproduction of existant fMRI data analyses pipelines;

      ▮ Use of comparison metrics to evaluate analytical variability;

      ▮ Impact of the number of subjects in this variability.

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      Supervised by Camille Maumet.

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    Internships

    ▮ Tissue section microscopy images analysis with ImageJ;

    ▮ Development of an R/Shiny app that gives an interaction between an intensity scatterplot and the image.

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    Supervised by Hugues Lelouard & Mathieu Fallet.

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    Internships

    MAP5 Laboratory, University Paris Descartes | Paris, France | Jun. 2019

    ▮ Initiation to statistical learning in Python applied to bioinformatics on biological data;

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    Supervised by Warith Harchaoui.

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    PhD student


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    PhD student


    PROJECTS
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    © Inria / Photo B. Fourrier diff --git a/mediation.html b/mediation.html new file mode 100644 index 0000000..659054d --- /dev/null +++ b/mediation.html @@ -0,0 +1,97 @@ + + + + + + Ongoing projects + + + + + + +
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    Scientific mediation

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      L Codent, L Créent 👧 +

      + The goal of this action is to promote computer science to young girls in middle-school (13-15 yo) through workshops of creative programming. Organisation of educational sessions in middle-schools (8 of 45min) and a final exhibition to expose the artworks.

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      Action presented during the Femmes&Sciences colloquium in 2022.

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      + [Slides] [Trinket] +
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      More information.

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      TISSAGE project 🧶 +

      + The TISSAGE project aims to bring together citizens, researchers and decision-makers to meet, know and understand each other to form a society and act together. This involves involving all stakeholders in all stages of science production in order to implement real participatory research. + Preparation of a mediation for a restitution day: Quizz about Artificial intelligence and human intelligence.

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      More information.

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      "Computing without computer" 🧩 +

      + Animation of sessions of "Computing without computer" to promote computer science to general public and scholars. Sessions at "J'peux pas j'ai informatique" day for teachers in middle school and at College Pierre-Olivier Malherbe, Chateaubourg for 9th grade students (3ème).

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      More information.

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      Semaine du cerveau (Brain week) 🧠 +

      + Organization and preparation of a quizz about neuroimaging research (the jobs, image treatment, neuroimaging methods, findings about the brain, etc.). Presentation during the Semaine du cerveau 2022 at CHU Pontchaillou, Rennes.

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      More information.

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      Big Day 2020 🧬 +

      + Organization of the Big Day 2020 with the Master of Bioinformatics and Genomics of Rennes: day of conference about bioinformatics and data science. Leader of the communication team.

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      More information.

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    PhD student


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    PhD student


    PROJECTS
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    Projects

    NARPS Open Pipelines Project

    The goal of the NARPS open pipeline project is to create a codebase reproducing the 70 pipelines of the NARPS project (Botvinik-Nezer et al., 2020) and share this as an open resource for the community.

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    Project presented at OHBM BrainHack 2022.

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    Project presented at OHBM BrainHack 2022 and OHBM BrainHack 2023.

    GitHub repository

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    PhD student

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    PhD student


    PROJECTS
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    Publications

    Conference talks and posters

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      2023

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      Elodie Germani, Elisa Fromont, Camille Maumet
      + "Exploring variability patterns in the task-fMRI analytical space" OHBM 2023 - 29th Annual Meeting of the Organization for Human Brain Mapping, Jul 2023, Montreal, Canada. +
      + [PDF] +

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      Elodie Germani, Elisa Fromont, Camille Maumet
      + "Representation learning for more reproducible fMRI data analyses" IABM 2023 - Colloque Français d'Intelligence Artificielle en Imagerie Biomédical, Mar 2023, Paris, France. pp.1. +
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    • 2022

      Elodie Germani, Camille Maumet