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<section id="Publications" class="Publications">
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<h2>Publications</h2>
</div>
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<link rel="stylesheet" href="assets/css/stylepubli.css"/>
<div id="res_script">
<p class='Rubrique'>2024</p>
<p class='SousRubrique'>Conference papers</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://hal.science/hal-04331232v2" target="_blank" >Uncovering communities of pipelines in the task-fMRI analytical space</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Elisa Fromont, Camille Maumet</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article"><i>2024 IEEE International Conference on Image Processing (ICIP)</i>, Abu Dhabi, United Arab Emirates, 2024, pp. 3044-3050. <a target="_blank" href="https://dx.doi.org/10.1109/ICIP51287.2024.10647701">⟨10.1109/ICIP51287.2024.10647701⟩</a></dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://hal.science/hal-04331232v2/file/icip2024-germ.pdf" target="_blank">
<img alt="https://hal.science/hal-04331232v2/file/icip2024-germ.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://hal.science/hal-04331232v2/file/icip2024-germ.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://hal.science/hal-04331232v2/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<p class='SousRubrique'>In revision</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inserm.hal.science/inserm-04465765" target="_blank" >Predicting Parkinson's disease trajectory using clinical and functional MRI features: a reproduction and replication study</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Nikhil Baghwat, Mathieu Dugré, Rémi Gau, Albert Montillo, Kevin Nguyen, Andrzej Sokolowski, Madeleine Sharp, Jean-Baptiste Poline, Tristan Glatard</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article">In revision at <a href="https://journals.plos.org/plosone/">PLOS ONE</a>.</dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inserm.hal.science/inserm-04465765v1/file/main.pdf" target="_blank">
<img alt="https://inserm.hal.science/inserm-04465765v1/file/main.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inserm.hal.science/inserm-04465765v1/file/main.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://inserm.hal.science/inserm-04465765v1/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inserm.hal.science/inserm-04466478" target="_blank" >On the validity of fMRI studies with subject-level data processed through different pipelines</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Xavier Rolland, Pierre Maurel, Camille Maumet</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article">In revision at <a href="https://janeway.imaging-neuroscience.org/">Imaging Neuroscience</a>.</dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inserm.hal.science/inserm-04466478v1/file/template.pdf" target="_blank">
<img alt="https://inserm.hal.science/inserm-04466478v1/file/template.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inserm.hal.science/inserm-04466478v1/file/template.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://inserm.hal.science/inserm-04466478v1/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<!-- <p class='SousRubrique'>Submitted preprints</p> -->
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inserm.hal.science/inserm-04531405" target="_blank" >Mitigating analytical variability in fMRI results with style transfer</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Camille Maumet, Elisa Fromont</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article">In revision at <a href="https://www.sciencedirect.com/journal/medical-image-analysis">Medical Image Analysis</a>.</dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inserm.hal.science/inserm-04531405v1/file/samplepaper.pdf" target="_blank">
<img alt="https://inserm.hal.science/inserm-04531405v1/file/samplepaper.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inserm.hal.science/inserm-04531405v1/file/samplepaper.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://hal.science/inserm-04531405v1/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<p class='SousRubrique'>Workshop or conference summaries</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://dx.doi.org/10.52294/001c.92760" target="_blank" >Proceedings of the OHBM Brainhack 2022
</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs">Stefano Moia, Hao-Ting Wang, Anibal S. Heinsfeld, Dorota Jarecka, Yu Fang Yang, Stephan Heunis, Michele Svanera, Benjamin De Leener, Andrea Gondová, Sin Kim, Arshitha Basavaraj, Johanna M. M. Bayer, Roza G. Bayrak, Pierre-Louis Bazin, Isil Poyraz Bilgin, Steffen Bollmann, Daniel Borek, Valentina Borghesani, Trang Cao, Gang Chen, Alejandro de La Vega, Sebastian Dresbach, Philipp Ehses, Jan Ernsting, Inês Esteves, Oscar Ferrante, Kelly G. Garner, Rémi Gau, <b>Elodie Germani</b>, Tara Ghafari, Satrajit S. Ghosh, Sarah E. Goodale, Cassandra D. Gould Van Praag, Samuel Guay, Omer Faruk Gulban, Yaroslav O. Halchenko, Michael Hanke, Peer Herholz, Katja Heuer, Felix Hoffstaedter, Ruoqi Huang, Renzo Huber, Ole Jensen, Kan Keeratimahat, Julian Q. Kosciessa, Sladjana Lukic, Neville Magielse, Christopher J. Markiewicz, Caroline G. Martin, Camille Maumet, Anna Menacher, Jeff Mentch, Christian Mönch, Shammi More, Leonardo Muller, Leonardo Muller-Rodriguez, Samuel A. Nastase, Eliana Nicolaisen-Sobesky, Dylan M. Nielson, Christopher R. Nolan, François Paugam, Pedro Pinheiro-Chagas, Ana Luísa Pinho, Alessandra Pizzuti, Benjamin Poldrack, Benedikt A. Poser, Roberta Rocca, Jacob Sanz-Robinson, Kelvin Sarink, Kevin R Sitek, Nadine Spychala, Rüdiger Stirnberg, Michał Szczepanik, Mohammad Torabi, Roberto Toro, Sebastian G. W. Urchs, Sofie L. Valk, Adina S Wagner, Laura K. Waite, Alexander Q. Waite, Lea Waller, Tyler J. Wishard, Jianxiao Wu, Yuchen Zhou, Janine D. Bijsterbosch</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article"><i>Aperture Neuro</i> Vol. 4, 2024 <a target="_blank" href="https://dx.doi.org/10.52294/001c.92760">⟨10.52294/001c.92760⟩</a></dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://apertureneuro.org/article/92760-proceedings-of-the-ohbm-brainhack-2022" target="_blank">
<img alt="https://apertureneuro.org/article/92760-proceedings-of-the-ohbm-brainhack-2022" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://apertureneuro.org/article/92760-proceedings-of-the-ohbm-brainhack-2022" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://hal.science/hal-04478342v2/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<p class='SousRubrique'>Poster communications</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inserm.hal.science/inserm-04531392" target="_blank" >Prédire l'évolution de la maladie de Parkinson à l'aide de données cliniques et d'IRM fonctionnelles: reproduction et robustesse d'une étude</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Nikhil Baghwat, Mathieu Dugré, Rémi Gau, Andrzej Sokolowski, Elisa Fromont, Camille Maumet, Madeleine Sharp, Jean-Baptiste Poline, Tristan Glatard</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article"><i>IABM 2024 - 2ème édition du Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale </i>, Mar 2024, Grenoble, France</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article">🏆 This poster was awarded with the <b>Best poster in medical imaging price</b> during the conference, sponsored by <a href="https://www.guerbet.com/">Guerbet</a>. </dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inserm.hal.science/inserm-04531392v1/file/abstract-iabm2024-egermani.pdf" target="_blank">
<img alt="https://inserm.hal.science/inserm-04531392v1/file/abstract-iabm2024-egermani.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inserm.hal.science/inserm-04531392v1/file/abstract-iabm2024-egermani.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://inserm.hal.science/inserm-04531392/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<hr/>
<p class='Rubrique'>2023</p>
<p class='SousRubrique'>Journal articles</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inria.hal.science/hal-03769993v6" target="_blank" >On the benefits of self-taught learning for brain decoding</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Elisa Fromont, Camille Maumet</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article"><i>GigaScience</i>, 2023, 12, pp.1-17. <a target="_blank" href="https://dx.doi.org/10.1093/gigascience/giad029">⟨10.1093/gigascience/giad029⟩</a></dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inria.hal.science/hal-03769993/file/on_the_benefits_of_self_taught_learning.pdf" target="_blank">
<img alt="https://inria.hal.science/hal-03769993/file/on_the_benefits_of_self_taught_learning.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inria.hal.science/hal-03769993/file/on_the_benefits_of_self_taught_learning.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://inria.hal.science/hal-03769993v6/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<p class='SousRubrique'>Preprints</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inserm.hal.science/inserm-04356768" target="_blank" >The HCP multi-pipeline dataset: an opportunity to investigate analytical variability in fMRI data analysis</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Elisa Fromont, Pierre Maurel, Camille Maumet</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article">Data paper soon submitted in <a href="https://www.nature.com/sdata/">Scientific data</a>, pending availability of data on Public-nEUro.</dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inserm.hal.science/inserm-04356768/file/main.pdf" target="_blank">
<img alt="https://inserm.hal.science/inserm-04356768/file/main.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inserm.hal.science/inserm-04356768/file/main.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://inserm.hal.science/inserm-04356768/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<p class='SousRubrique'>Poster communications</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inria.hal.science/hal-03991042" target="_blank" >Exploring variability patterns in the task-fMRI analytical space</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Elisa Fromont, Camille Maumet</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article"><i>OHBM 2023 - 29th Annual Meeting of the Organization for Human Brain Mapping</i>, Jul 2023, Montreal, Canada</dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inria.hal.science/hal-03991042/file/abstract_OHBM.pdf" target="_blank">
<img alt="https://inria.hal.science/hal-03991042/file/abstract_OHBM.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inria.hal.science/hal-03991042/file/abstract_OHBM.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://inria.hal.science/hal-03991042/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inria.hal.science/hal-04068797" target="_blank" >Representation learning for more reproducible fMRI data analyses</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Elisa Fromont, Camille Maumet</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article"><i>IABM 2023 - Colloque Français d'Intelligence Artificielle en Imagerie Biomédical</i>, Mar 2023, Paris, France. pp.1</dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inria.hal.science/hal-04068797/file/poster_elodiegermani.pdf" target="_blank">
<img alt="https://inria.hal.science/hal-04068797/file/poster_elodiegermani.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inria.hal.science/hal-04068797/file/poster_elodiegermani.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://inria.hal.science/hal-04068797/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<hr/>
<p class='Rubrique'>2022</p>
<p class='SousRubrique'>Poster communications</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://inserm.hal.science/inserm-03642535" target="_blank" >FMRI data analysis: How does analytical variability vary with sample size?</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Camille Maumet</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article"><i>OHBM 2022 - 28th Annual Meeting of the Organization for Human Brain Mapping</i>, Jun 2022, Glasgow, United Kingdom. pp.1-5</dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://inserm.hal.science/inserm-03642535/file/abstract_analytical_variability_sample_size_egermani_cmaumet.pdf" target="_blank">
<img alt="https://inserm.hal.science/inserm-03642535/file/abstract_analytical_variability_sample_size_egermani_cmaumet.pdf" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://inserm.hal.science/inserm-03642535/file/abstract_analytical_variability_sample_size_egermani_cmaumet.pdf" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://inserm.hal.science/inserm-03642535/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
<hr/>
<p class='Rubrique'>2020</p>
<p class='SousRubrique'>Journal articles</p>
<dl class='NoticeRes'>
<dt class="ChampRes">titre</dt><dd class="ValeurRes Titre"><a href="https://dx.doi.org/10.12688/f1000research.27062.2" target="_blank" >SAPHIR: a Shiny application to analyze tissue section images</a></dd>
<dt class="ChampRes">auteur</dt><dd class="ValeurRes Auteurs"><b>Elodie Germani</b>, Hugues Lelouard, Mathieu Fallet</dd>
<dt class="ChampRes">article</dt><dd class="ValeurRes article"><i>F1000Research</i>, 2020, 9, pp.1276. <a target="_blank" href="https://dx.doi.org/10.12688/f1000research.27062.2">⟨10.12688/f1000research.27062.2⟩</a></dd>
<dt class="ChampRes">Accès au texte intégral et bibtex</dt>
<dd class="ValeurRes Fichier_joint">
<a href="https://f1000research.com/articles/9-1276/v2/pdf?article_uuid=fd674527-6441-4609-9579-f4a028936a43" target="_blank">
<img alt="https://f1000research.com/articles/9-1276/v2/pdf?article_uuid=fd674527-6441-4609-9579-f4a028936a43" src="https://haltools.archives-ouvertes.fr/images/Haltools_pdf.png" border="0" title="https://f1000research.com/articles/9-1276/v2/pdf?article_uuid=fd674527-6441-4609-9579-f4a028936a43" /></a>
<span class="LienBibtexACoteFulltext"><a href="https://hal.science/hal-02994224/bibtex" target="_self">
<img alt="BibTex" src="https://haltools.archives-ouvertes.fr/images/Haltools_bibtex3.png" border="0" title="BibTex" /></a>
</span></dd>
</dl>
</div>
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