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curriculum.html
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<h2>Curriculum</h2>
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<h3 style="font-size:22px; color:#1f2c6c">Education</h3>
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<div class="experience-time">
<h2>2015 - 2019</h2>
<h3>Medicine studies</h3>
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<h4 class="title">
Université de Versailles St Quentin
</h4>
<h5>France</h5>
<p class="description">
<p>PACES, 2nd, 3rd years of medicine school. <b>Bachelor equivalence</b>.</p>
<p>PACES in one year, <b>rank : 70/699</b>. </p>
</p>
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<h2>2019 - 2021</h2>
<h3>Master's degree <span>in</span> Bioinformatics</h3>
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<h4 class="title">
université de Rennes
</h4>
<h5>France</h5>
<p class="description">
<p>Spe. IBI (Informatics & Integrative Biology). </p>
<p><b>Mention très bien. Rank 1/17.</b></p>
</p>
</div><!--/.timeline-content-->
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<div class="experience-time">
<h2>2021 - 2024</h2>
<h3>Ph. D. <span>in</span> Computer Sciences</h3>
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université de rennes
</h4>
<h5>france</h5>
<p class="description">
<p>Topic: <i>Explore and mitigate analytical variability in fMRI with representation learning.</i></p>
<p>Supervised by Dr. <a href="http://camillemaumet.com" style="font-size:15px">Camille Maumet</a> and Pr. <a href="http://people.irisa.fr/Elisa.Fromont/" style="font-size:15px">Elisa Fromont</a> </p>
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<h3 style="font-size:22px; color:#1f2c6c">Experience</h3>
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<h2>2024 - Present</h2>
<h3>Postdoctoral researcher</h3>
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<div class="timeline">
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<h4 class="title">
<span><i class="fa fa-circle" aria-hidden="true"></i></span>
Universitätsklinikum Bonn
</h4>
<h5>Germany</h5>
<p class="description">
Improving security, fairness and affordability of AI for medical imaging to facilitate their integration in clinical settings, and to bridge the gap between low- and high-resource healthcare settings. Supervised by <a href="http://albarqounilab.github.io/" style="font-size:14px">Pr. Shadi Albarqouni</a>.
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2021 - 2024
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<h3>Doctorate researcher</h3>
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<h4 class="title">
Université de Rennes
</h4>
<h5>France</h5>
<p class="description">
Learning meaningful representations of fMRI results to facilitate the re-use of data from public databases. Exploration of the fMRI analytical space: development of a multi-pipeline dataset, and evaluation of the relationships between different pipelines.
Supervised by <a href="http://camillemaumet.com/" style="font-size:14px">Dr. Camille Maumet</a> & <a href="http://people.irisa.fr/Elisa.Fromont/" style="font-size:14px">Pr. Elisa Fromont</a>.
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<h2>
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2021 - 2024
</h2>
<h3>Doctorate researcher</h3>
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<h2>Aug. 2023 - Nov. 2023</h2>
<h3>Visiting researcher</h3>
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<div class="timeline">
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<h4 class="title">
<span><i class="fa fa-circle" aria-hidden="true"></i></span>
Concordia University
</h4>
<h5>Montreal, Canada</h5>
<p class="description">
Reproduction and exploration of workflow variations in a study on prediction of Parkinson’s disease progression using fMRI features. Supervised by <a href="https://www.mcgill.ca/neuro/jean-baptiste-poline-phd/" style="font-size:14px">Pr. JB Poline</a> & <a href="https://users.encs.concordia.ca/~tglatard/" style="font-size:14px">Pr. Tristan Glatard</a>
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<h2>
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Jan. 2021 - Jul. 2021
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<h3>Master's degree internship</h3>
</div><!--/.experience-time-->
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<div class="timeline">
<div class="timeline-content text-right">
<h4 class="title">
Université de Rennes
</h4>
<h5>France</h5>
<p class="description">
Reproduction of fMRI pipelines used in NARPS (Project <a href="https://github.com/Inria-Empenn/narps_open_pipelines" style="font-size:14px">Narps Open Pipelines</a>). Impact of the number of subjects on analytical variability. Supervised by <a href="http://camillemaumet.com/" style="font-size:14px">Dr. Camille Maumet</a>.
</p>
</div><!--/.timeline-content-->
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<h2>
<span><i class="fa fa-circle" aria-hidden="true"></i></span>
Jan. 2021 - Jul. 2021
</h2>
<h3>Master's degree internship</h3>
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<h2>Apr. 2020 - Jul. 2020</h2>
<h3>Master's degree internship</h3>
</div><!--/.experience-time-->
</div><!--/.col-->
<div class="col-md-offset-1 col-md-5">
<div class="timeline">
<div class="timeline-content">
<h4 class="title">
<span><i class="fa fa-circle" aria-hidden="true"></i></span>
Centre d'Immunologie de Marseille-Luminy
</h4>
<h5>France</h5>
<p class="description">
Development of an R/Shiny interactive app to facilitate the analysis of histo-cytometry images. Supervised by <a href="https://scholar.google.fr/citations?user=gzhZeOoAAAAJ&hl=fr" style="font-size:14px">Hugues Lelouard</a> & <a href="https://www.linkedin.com/in/mathieu-fallet-48471323/?originalSubdomain=fr" style="font-size:14px">Mathieu Fallet</a>.
</p>
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<div class="section-heading text-center">
<h3 style="font-size:22px; color:#1f2c6c">Teaching</h3>
</div>
<div class="container">
<br>
<br>
<br>
<ul>
<div class="timeline-content"><span>Summer School on Affordable Artificial Intelligence (SAAI)</span></div>
<p>AGYA | Bonn, Germany | July 2024 </p>
<p class="description">
Practical sessions of Python programming for data science and machine learning, statistics and mathematics. </p>
<p class="description">TP: 10h.</p>
<br>
<div class="timeline-content"><span>L2 ISTN - Data science</span></div>
<p>ISTIC, University of Rennes | France | Feb. 2023 - May. 2023</p>
<p class="description">
<p>Initiation to data management, visualization, modelisation (linear regression, statistical testing, time series, etc.) using R. </p>
<p>TP: 24h.</p>
</p>
<br>
<div class="timeline-content"><span>M2 SIBM - UE3 Exploiting massive and complex data</span></div>
<p>UFR Medicine, University of Rennes | France | Feb. 2023 - May. 2023 </p>
<p class="description">
<p>Explanations of the notion of pipeline, analytical variability, good practices of publication, etc. </p>
<p>CM: 3h, one group of 12 students.</p>
</p>
<br>
<div class="timeline-content"><span>L1 ISTN - Professional project and communication</span></div>
<p>ISTIC, University of Rennes | France | Feb. 2023 - May. 2023 </p>
<p class="description">
<p>Tutorial to use LibreOffice. </p>
<p>TP: 8h, one group of 40 students. </p>
</p>
<br>
<div class="timeline-content"><span>L1 ISTN - Principles of computer systems</span></div>
<p>ISTIC, University of Rennes 1 | France | Feb. 2023 - May. 2023 </p>
<p class="description">
<p>Analysis of the operation of several computer systems and various principles, such as the principle of locality, and an introduction to measuring the capacities of these systems and to the notion of quantity of information. </p>
<p>TP: 28h, one group of 40 students. </p>
</p>
<br>
<div class="timeline-content"><span>M2 IL - Machine Learning</span></div>
<p>ISTIC, University of Rennes 1 | France | Nov. 2022 - Dec. 2023 </p>
<p class="description">
<p>Initiation to machine learning in Python using scikit-learn and Keras.</p>
<p>TP: 10h per year, one group of 10 students. Course given in Fall 2022 and 2023. </p>
</p>
<br>
<div class="timeline-content"><span>L1 BECV - Mathematics for biology</span></div>
<p>UFR SVE, University of Rennes 1 | France | Sep. 2021 - Apr. 2022 </p>
<p class="description">
<p>TD: 3h per week, 2 groups of 40 students. Statistics, probability laws...</p>
<p>TP: 3h per week, 2 groups of 20 students. Learning of Python programming language with biologic applications. </p>
</p>
<br>
<div class="timeline-content"><span>Initiation to creative programming with Python</span></div>
<p>L codent, L créent initiative in College Le Landry | France | Sep. 2021 - Dec. 2021 </p>
<p class="description">
<p>Creative programming with the package "processing" in Python. </p>
<p>45min sessions, once a week during 8 weeks for girls only (13-14 yo). </p>
<p>More information here: <a href="http://lclc-rennes.irisa.fr/" style="font-size:14px"> lclc-rennes.irisa.fr </a></p>
</p>
<br>
<div class="timeline-content"><span>Tutorials in Biostatistics</span></div>
<p>Paris Ouest Tutorat | France | Sep. 2016 - Jan. 2017 </p>
<p class="description">
<p>Courses for PACES students (preparing 1st year common to health studies competition); </p>
<p>Writing & corrections of mock exams.</p>
</p>
<br>
<div class="timeline-content"><span>Tutorials in Mathematics</span></div>
<p> Sep. 2016 - Jul. 2018 </p>
<p class="description">
<p>For pupiles aged from 13 to 16 years old; </p>
<p>Preparation of the baccalaureat with a Term. S student (Scientific track). </p>
</p>
</ul>
</div>
<br>
<br>
<br>
<div class="section-heading text-center">
<h3 style="font-size:22px; color:#1f2c6c">Supervision</h3>
</div>
<div class="container">
<br>
<br>
<br>
<ul>
<div class="timeline-content"><span>Ilayda Selin Türk - TU Münich</span></div>
<p>Oct. 2024 - Current </p>
<p class="description">
<p>Master thesis: <a href="https://albarqouni.github.io/students/theses/ma_thesis_on_investigating_bias_in_ai_algorithms_for_breast_cancer_detection_in_mammography_imaging/" style="font-size:14px">Investigating Bias in AI Algorithms for Breast Cancer Detection from Mammography Imaging: A Focus on Generalization to Unseen Populations</a>. <br> Co-supervised with Pr. Shadi Albarqouni. </p>
</p>
<br>
<div class="timeline-content"><span>Malek Al Abed - TU Münich</span></div>
<p>Oct. 2024 - Current </p>
<p class="description">
<p>Master thesis: <a href="https://albarqouni.github.io/students/theses/ma_thesis_on_image_quality_transfer/" style="font-size:14px">Deep Learning for Low-field Brain Image Quality Transfer</a>. <br> Co-supervised with Pr. Shadi Albarqouni. </p>
</p>
<br>
<div class="timeline-content"><span>Thibault Chanus - ENS Rennes</span></div>
<p>Oct. 2023 - Jan. 2024 </p>
<p class="description">
<p>Master's project on diffusion models for style transfer. <br> Co-supervised with Pr. Elisa Fromont. </p>
</p>
<br>
<div class="timeline-content"><span>Maïwenn Fleig - University of Düsseldorf</span></div>
<p>Apr. 2023 - July 2023 </p>
<dp class="description">
<p>Research Ingeneer. Use of diffusion models on fMRI statistic maps. <br> Co-supervised with Pr. Elisa Fromont. </p>
</p>
</ul>
</div>
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