Update human_pathogen_genomics.md #3732
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Jekyll site CI | |
| on: | |
| push: | |
| pull_request: | |
| branches: [ master, main ] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.inputs.branch }} | |
| - name: Setup Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: '3.1' | |
| bundler-cache: true | |
| cache-version: 0 | |
| - name: Setup Pages | |
| id: pages | |
| uses: actions/configure-pages@v2 | |
| - name: Set Jekyll environment | |
| id: name | |
| run: | | |
| if [ "$REPO_OWNER" == "elixir-europe" ]; then | |
| echo "jekyll_env=production" >> $GITHUB_OUTPUT | |
| else | |
| echo "jekyll_env=development" >> $GITHUB_OUTPUT | |
| fi | |
| env: | |
| REPO_OWNER: ${{ github.repository_owner }} | |
| - name: Install dependencies | |
| run: | | |
| bundle install | |
| - name: Build with Jekyll | |
| # Outputs to the './_site' directory by default | |
| run: | | |
| bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path }}" | |
| env: | |
| PAGES_REPO_NWO: ${{ github.repository }} | |
| JEKYLL_BUILD_BRANCH: ${{ github.ref_name }} | |
| JEKYLL_ENV: ${{ steps.name.outputs.jekyll_env }} | |
| JEKYLL_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| JEKYLL_BASE_PATH: ${{ steps.pages.outputs.base_path }} | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v1 | |
| deploy: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| if: | | |
| github.event_name == 'workflow_dispatch' || | |
| (github.event_name == 'push' && github.event.repository.default_branch == github.ref_name) | |
| concurrency: | |
| group: "pages" | |
| cancel-in-progress: true | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v1 | |