From 98eb762f5e7792412bd0404de5017ab8b4b00ce5 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Fri, 10 Nov 2023 19:58:37 -0500
Subject: [PATCH] .gitlab-ci.yml: add snakemake sim_output path support

---
 .gitlab-ci.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c7edc112..362551d8 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -117,6 +117,9 @@ get_data:
     - ls -lrtha 
     - ln -s "${LOCAL_DATA_PATH}/sim_output" sim_output
     - ln -s "${LOCAL_DATA_PATH}/datasets/data" data
+    # snakemake support
+    - mkdir "${DETECTOR_CONFIG}"
+    - ln -s "${LOCAL_DATA_PATH}/sim_output" "${DETECTOR_CONFIG}/sim_output"
     - ls -lrtha
   retry:
     max: 2