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linux-eic-shell.yml
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name: Build against eic-shell
on:
schedule: # run regularly on main branch
- cron: '13 0/8 * * *'
push:
branches:
- main
- 'v[0-9]+.[0-9]+' # maintenance branches
tags:
- '*'
pull_request:
merge_group:
workflow_dispatch:
inputs:
platform-release:
description: 'eic-shell version'
default: 'jug_xl:nightly'
required: false
type: string
detector-version:
description: 'epic geometry version'
default: 'main'
required: false
type: string
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.run_id }}
cancel-in-progress: true
env:
platform-release: ${{ inputs.platform-release || 'jug_xl:nightly' }}
detector-version: ${{ inputs.detector-version || 'main' }}
clang-tidy-iwyu-CC: clang
clang-tidy-iwyu-CMAKE_BUILD_TYPE: Debug
ASAN_OPTIONS: suppressions=${{ github.workspace }}/.github/asan.supp:malloc_context_size=20:detect_leaks=1:verify_asan_link_order=0:detect_stack_use_after_return=1:detect_odr_violation=1:new_delete_type_mismatch=0:intercept_tls_get_addr=0
LSAN_OPTIONS: suppressions=${{ github.workspace }}/.github/lsan.supp
UBSAN_OPTIONS: suppressions=${{ github.workspace }}/.github/ubsan.supp:print_stacktrace=1
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
include:
- CC: gcc
CXX: g++
CMAKE_BUILD_TYPE: Release
- CC: gcc
CXX: g++
CMAKE_BUILD_TYPE: Debug
- CC: clang
CXX: clang++
CMAKE_BUILD_TYPE: Release
- CC: clang
CXX: clang++
CMAKE_BUILD_TYPE: Debug
CXXFLAGS: -fprofile-instr-generate -fcoverage-mapping
steps:
- uses: actions/checkout@v4
- name: Prepare ccache timestamp
id: ccache_cache_timestamp
run: |
echo "timestamp=$(date --iso-8601=minutes)" >> $GITHUB_OUTPUT
- name: Retrieve ccache cache files
uses: actions/cache@v4
with:
path: .ccache
key: ccache-${{ matrix.CC }}-${{ matrix.CMAKE_BUILD_TYPE }}-${{ github.event.pull_request.head.ref || github.ref_name }}-${{ steps.ccache_cache_timestamp.outputs.timestamp }}
restore-keys: |
ccache-${{ matrix.CC }}-${{ matrix.CMAKE_BUILD_TYPE }}-${{ github.ref_name }}-
ccache-${{ matrix.CC }}-${{ matrix.CMAKE_BUILD_TYPE }}-${{ github.event.pull_request.head.ref }}-
ccache-${{ matrix.CC }}-${{ matrix.CMAKE_BUILD_TYPE }}-${{ github.event.pull_request.base.ref }}-
ccache-${{ matrix.CC }}-${{ matrix.CMAKE_BUILD_TYPE }}-
ccache-${{ matrix.CC }}-
ccache-
- name: Configure ccache
run: |
mkdir -p ~/.ccache/
echo "cache_dir=${{ github.workspace }}/.ccache" > ~/.ccache/ccache.conf
echo "max_size=1500MB" >> ~/.ccache/ccache.conf
echo "compression=true" >> ~/.ccache/ccache.conf
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Build and install
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
run: |
# install this repo
CC="${{ matrix.CC }}" CXX="${{ matrix.CXX }}" CXXFLAGS="${{ matrix.CXXFLAGS }}" cmake -B build -S . -DCMAKE_INSTALL_PREFIX=install -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_BUILD_TYPE=${{ matrix.CMAKE_BUILD_TYPE }} -DUSE_ASAN=ON -DUSE_TSAN=OFF -DUSE_UBSAN=ON
cmake --build build -j $(getconf _NPROCESSORS_ONLN) --target install
ccache --show-stats --verbose
- name: Check dynamic library loader paths
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export LD_LIBRARY_PATH=$PWD/lib:$LD_LIBRARY_PATH
for lib in install/lib/*.so install/lib/EICrecon/plugins/*.so ; do
readelf -d $lib
ldd -r $lib
done
- name: Run testsuite
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
run: |
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
ctest --test-dir build -V
- name: Compress install directory
run: tar -caf install.tar.zst install/
- name: Upload install directory
uses: actions/upload-artifact@v4
with:
name: install-${{ matrix.CC }}-eic-shell-${{ matrix.CMAKE_BUILD_TYPE }}
path: install.tar.zst
if-no-files-found: error
# Only compress and upload build directory if we are going to use it later
- name: Compress build directory
if: matrix.CC == env.clang-tidy-iwyu-CC && matrix.CMAKE_BUILD_TYPE == env.clang-tidy-iwyu-CMAKE_BUILD_TYPE
run: tar -caf build.tar.zst build/
- name: Upload build directory
if: matrix.CC == env.clang-tidy-iwyu-CC && matrix.CMAKE_BUILD_TYPE == env.clang-tidy-iwyu-CMAKE_BUILD_TYPE
uses: actions/upload-artifact@v4
with:
name: build-${{ matrix.CC }}-eic-shell-${{ matrix.CMAKE_BUILD_TYPE }}
path: build.tar.zst
if-no-files-found: error
clang-tidy-iwyu:
runs-on: ubuntu-latest
needs: build
steps:
- run: echo "FETCH_DEPTH=$(( ${{ github.event.pull_request.commits }} + 1 ))" >> "${GITHUB_ENV}"
- uses: actions/checkout@v4
with:
fetch-depth: ${{ env.FETCH_DEPTH }}
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Download build artifact
uses: actions/download-artifact@v4
with:
name: build-${{ env.clang-tidy-iwyu-CC }}-eic-shell-${{ env.clang-tidy-iwyu-CMAKE_BUILD_TYPE }}
path: .
- name: Uncompress build artifact
run: tar -xaf build.tar.zst
- name: Run clang-tidy on changed files
uses: eic/run-cvmfs-osg-eic-shell@main
if: ${{ github.event_name == 'pull_request' }}
with:
platform-release: "${{ env.platform-release }}"
run: |
git diff ${{github.event.pull_request.base.sha}} ${{ github.event.pull_request.base.sha }} | clang-tidy-diff -p 1 -path build -quiet -export-fixes clang_tidy_fixes.yml -extra-arg='-std=c++20' -checks='-*,bugprone-*,-bugprone-narrowing-conversions' -clang-tidy-binary run-clang-tidy
- name: Run clang-tidy on all files
uses: eic/run-cvmfs-osg-eic-shell@main
if: ${{ github.event_name == 'push' }}
with:
platform-release: "${{ env.platform-release }}"
run: |
run-clang-tidy -p build -export-fixes clang_tidy_fixes.yml -extra-arg='-std=c++20'
- name: Upload clang-tidy fixes as artifact
uses: actions/upload-artifact@v4
with:
name: clang-tidy-fixes.yml
path: clang_tidy_fixes.yml
if-no-files-found: ignore
- name: Suggest clang-tidy fixes as PR comments
uses: platisd/[email protected]
if: ${{ github.event_name == 'pull_request' }}
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
clang_tidy_fixes: clang_tidy_fixes.yml
request_changes: true
suggestions_per_comment: 10
- name: Run include-what-you-use (iwyu) on changed files
uses: eic/run-cvmfs-osg-eic-shell@main
if: ${{ github.event_name == 'pull_request' }}
with:
platform-release: "${{ env.platform-release }}"
run: |
# reduce headers until diff is stable
while [[ ${sha:-} != $(git diff | sha256sum) ]] ; do
sha=$(git diff | sha256sum)
echo $sha
iwyu_tool.py -p build $(git diff --name-only ${{github.event.pull_request.head.sha}} ${{ github.event.pull_request.base.sha }}) -- -Xiwyu --verbose=3 -Xiwyu --no_fwd_decls -Xiwyu --cxx17ns -Xiwyu --mapping_file=${{github.workspace}}/.github/iwyu.imp -Xiwyu --regex=ecmascript | tee iwyu_fixes.log
fix_includes.py --blank_lines --nosafe_headers --reorder --separate_project_includes="<tld>" --keep_iwyu_namespace_format < iwyu_fixes.log
git diff | tee iwyu_fixes.patch
done
- name: Run include-what-you-use (iwyu) on all files
uses: eic/run-cvmfs-osg-eic-shell@main
if: ${{ github.event_name == 'push' }}
with:
platform-release: "${{ env.platform-release }}"
run: |
# don't aim for stability for all files
iwyu_tool.py -p build -- -Xiwyu --verbose=3 -Xiwyu --no_fwd_decls -Xiwyu --cxx17ns -Xiwyu --mapping_file=${{github.workspace}}/.github/iwyu.imp -Xiwyu --regex=ecmascript | tee iwyu_fixes.log
fix_includes.py --blank_lines --nosafe_headers --reorder --separate_project_includes="<tld>" --keep_iwyu_namespace_format < iwyu_fixes.log
git diff | tee iwyu_fixes.patch
- name: Upload iwyu patch as artifact
uses: actions/upload-artifact@v4
with:
name: iwyu_fixes.patch
path: iwyu_fixes.patch
if-no-files-found: ignore # no file is good
- name: Fail when iwyu provided a patch for this pull request
if: ${{ github.event_name == 'pull_request' }}
run: git diff --exit-code
llvm-cov:
runs-on: ubuntu-latest
needs: build
permissions:
statuses: write
steps:
- uses: actions/checkout@v4
- name: Download build artifact
uses: actions/download-artifact@v4
with:
name: build-${{ env.clang-tidy-iwyu-CC }}-eic-shell-${{ env.clang-tidy-iwyu-CMAKE_BUILD_TYPE }}
path: .
- name: Uncompress build artifact
run: tar -xaf build.tar.zst
- run: sudo apt-get update
- run: sudo apt-get install -y llvm-15 jq
- name: llvm-cov
run: |
cd build
COV_OPTIONS=('--ignore-filename-regex=usr/local/include/eigen3.+')
llvm-profdata-15 merge -sparse src/tests/algorithms_test/algorithms_test.profraw \
-o src/tests/algorithms_test/algorithms_test.profdata
LIB_PATHS=()
for LIB_NAME in algorithms_calorimetry algorithms_digi algorithms_pid algorithms_reco algorithms_tracking; do
LIB_PATH="$(find src/ -type f -name "*$LIB_NAME.so")"
LIB_PATHS+=("$LIB_PATH")
llvm-cov-15 report $LIB_PATH \
-instr-profile=src/tests/algorithms_test/algorithms_test.profdata \
"${COV_OPTIONS[@]}"
COV_PERCENT=$(llvm-cov-15 export $LIB_PATH \
-instr-profile=src/tests/algorithms_test/algorithms_test.profdata \
"${COV_OPTIONS[@]}" | jq '.data | map(.totals.regions.percent) | .[]' | xargs printf "%.1f\n")
if [ "${{ github.event.pull_request.head.repo.full_name }}" = "${{ github.repository }}" ]; then
curl --request POST \
--url https://api.github.com/repos/${{ github.repository }}/statuses/${{ github.event.pull_request.head.sha || github.sha }} \
--header "Accept: application/vnd.github+json" \
--header "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" \
--header "X-GitHub-Api-Version: 2022-11-28" \
--data '{
"state": "success",
"context": "Code coverage ('$LIB_NAME') - '$COV_PERCENT'%"
}' \
--fail-with-body
else
echo 'PR submitted from a fork. Skipping posting the "Code coverage ('$LIB_NAME') - '$COV_PERCENT'%" status.'
fi
done
llvm-cov-15 show "${LIB_PATHS[@]/#/--object=}" \
-instr-profile=src/tests/algorithms_test/algorithms_test.profdata \
-output-dir=codecov_report -format=html \
"${COV_OPTIONS[@]}"
- uses: actions/upload-artifact@v4
with:
name: codecov_report
path: build/codecov_report/
npsim-gun:
runs-on: ubuntu-latest
strategy:
matrix:
particle: [pi, e]
detector_config: [craterlake]
steps:
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Get detector info
id: detector_info
run: |
grep epic/nightly /cvmfs/singularity.opensciencegrid.org/eicweb/jug_xl\:nightly/etc/jug_info | sed 's/.*: .*-\(.*\)/hash=\1/g' >> $GITHUB_OUTPUT
- name: Retrieve simulation files
id: retrieve_simulation_files
uses: actions/cache@v4
with:
path: sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root
key: sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root-${{ steps.detector_info.outputs.hash }}
- name: Produce simulation files
uses: eic/run-cvmfs-osg-eic-shell@main
if: steps.retrieve_simulation_files.outputs.cache-hit != 'true'
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
npsim --compactFile ${DETECTOR_PATH}/${DETECTOR}_${{ matrix.detector_config }}.xml -G --random.seed 1 --gun.particle "${{ matrix.particle }}-" --gun.momentumMin "1*GeV" --gun.momentumMax "20*GeV" --gun.distribution "uniform" -N 100 --outputFile sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root -v WARNING
- uses: actions/upload-artifact@v4
with:
name: sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root
path: sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root
if-no-files-found: error
npsim-gun-EcalLumiSpec:
runs-on: ubuntu-latest
strategy:
matrix:
particle: [e]
detector_config: [ip6_extended]
steps:
- uses: actions/checkout@v4
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Get detector info
id: detector_info
run: |
grep epic/nightly /cvmfs/singularity.opensciencegrid.org/eicweb/jug_xl\:nightly/etc/jug_info | sed 's/.*: .*-\(.*\)/hash=\1/g' >> $GITHUB_OUTPUT
- name: Retrieve simulation files
id: retrieve_simulation_files
uses: actions/cache@v4
with:
path: sim_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4hep.root
key: sim_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4hep.root-${{ steps.detector_info.outputs.hash }}
- name: Produce simulation files
uses: eic/run-cvmfs-osg-eic-shell@main
if: steps.retrieve_simulation_files.outputs.cache-hit != 'true'
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
python src/tests/LUMISPECCAL_test/TwoElectronsTopCAL.py genParticles.hepmc
npsim --compactFile ${DETECTOR_PATH}/${DETECTOR}_${{ matrix.detector_config }}.xml --inputFiles genParticles.hepmc --random.seed 1 --outputFile sim_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4hep.root -N 100 -v WARNING
- uses: actions/upload-artifact@v4
with:
name: sim_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4hep.root
path: sim_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4hep.root
if-no-files-found: error
npsim-dis:
runs-on: ubuntu-latest
strategy:
matrix:
beam: [5x41, 10x100, 18x275]
minq2: [1, 1000]
detector_config: [craterlake]
exclude:
- beam: 5x41
minq2: 1000
steps:
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Get detector info
id: detector_info
run: |
grep epic/nightly /cvmfs/singularity.opensciencegrid.org/eicweb/jug_xl\:nightly/etc/jug_info | sed 's/.*: .*-\(.*\)/hash=\1/g' >> $GITHUB_OUTPUT
- name: Retrieve simulation files
id: retrieve_simulation_files
uses: actions/cache@v4
with:
path: sim_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4hep.root
key: sim_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4hep.root-${{ steps.detector_info.outputs.hash }}
- name: Produce simulation files
uses: eic/run-cvmfs-osg-eic-shell@main
if: steps.retrieve_simulation_files.outputs.cache-hit != 'true'
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
url=root://dtn-eic.jlab.org//work/eic2/EPIC/EVGEN/DIS/NC/${{matrix.beam}}/minQ2=${{matrix.minq2}}/pythia8NCDIS_${{matrix.beam}}_minQ2=${{matrix.minq2}}_beamEffects_xAngle=-0.025_hiDiv_1.hepmc3.tree.root
npsim --compactFile ${DETECTOR_PATH}/${DETECTOR}_${{ matrix.detector_config }}.xml -N 100 --inputFiles ${url} --random.seed 1 --outputFile sim_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4hep.root -v WARNING
- uses: actions/upload-artifact@v4
with:
name: sim_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4hep.root
path: sim_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4hep.root
if-no-files-found: error
eicrecon-two-stage-running:
runs-on: ubuntu-latest
needs:
- build
- npsim-gun
strategy:
matrix:
CC: [gcc]
particle: [e]
detector_config: [craterlake]
steps:
- name: Checkout .github
uses: actions/checkout@v4
with:
sparse-checkout: .github
- name: Download install directory
uses: actions/download-artifact@v4
with:
name: install-${{ matrix.CC }}-eic-shell-Release
- name: Unarchive install directory
run: tar -xaf install.tar.zst
- name: Download simulation input
uses: actions/download-artifact@v4
with:
name: sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root
- name: Setup cvmfs
uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Run EICrecon (digitization)
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export DETECTOR_CONFIG=${DETECTOR}_${{ matrix.detector_config }}
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
export JANA_PLUGIN_PATH=$PWD/install/lib/EICrecon/plugins${JANA_PLUGIN_PATH:+:${JANA_PLUGIN_PATH}}
$PWD/install/bin/eicrecon -Ppodio:output_collections=EventHeader,MCParticles,EcalBarrelScFiRawHits,EcalBarrelImagingRawHits -Ppodio:output_file=two_stage_raw_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root -Pplugins=dump_flags,janadot -Pdump_flags:json=${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json -Pjana:warmup_timeout=0 -Pjana:timeout=0
- name: Upload digitization output
uses: actions/upload-artifact@v4
with:
name: two_stage_raw_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
path: two_stage_raw_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
if-no-files-found: error
- name: Run EICrecon (reconstruction)
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export DETECTOR_CONFIG=${DETECTOR}_${{ matrix.detector_config }}
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
export JANA_PLUGIN_PATH=$PWD/install/lib/EICrecon/plugins${JANA_PLUGIN_PATH:+:${JANA_PLUGIN_PATH}}
$PWD/install/bin/eicrecon -Ppodio:output_collections=EcalBarrelClusters,EcalBarrelClusterAssociations -Ppodio:output_file=two_stage_rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root two_stage_raw_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root -Pplugins=dump_flags,janadot -Pdump_flags:json=${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json -Pjana:warmup_timeout=0 -Pjana:timeout=0
- name: Upload reconstruction output
uses: actions/upload-artifact@v4
with:
name: two_stage_rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
path: two_stage_rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
if-no-files-found: error
eicrecon-eicmkplugin:
runs-on: ubuntu-latest
needs:
- build
- npsim-gun
strategy:
matrix:
CC: [gcc]
particle: [e]
detector_config: [craterlake]
steps:
- name: Checkout .github
uses: actions/checkout@v4
with:
sparse-checkout: .github
- name: Download install directory
uses: actions/download-artifact@v4
with:
name: install-${{ matrix.CC }}-eic-shell-Release
- name: Unarchive install directory
run: tar -xaf install.tar.zst
- uses: actions/download-artifact@v4
with:
name: sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Run EICrecon
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export DETECTOR_CONFIG=${DETECTOR}_${{ matrix.detector_config }}
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
export JANA_PLUGIN_PATH=$PWD/install/lib/EICrecon/plugins${JANA_PLUGIN_PATH:+:${JANA_PLUGIN_PATH}}
$PWD/install/bin/eicmkplugin.py MyCustomPlugin
cmake -S MyCustomPlugin -B MyCustomPlugin/build -DEICrecon_ROOT=$PWD/install -DUSER_PLUGIN_OUTPUT_DIRECTORY=$PWD/install/lib/EICrecon/plugins
cmake --build MyCustomPlugin/build -j $(getconf _NPROCESSORS_ONLN) --target install
$PWD/install/bin/eicrecon -Pplugins=MyCustomPlugin -Ppodio:output_file=rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root -Pplugins=dump_flags,janadot -Pdump_flags:json=${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json -Pjana:warmup_timeout=0 -Pjana:timeout=0
eicrecon-benchmarks-plugins:
runs-on: ubuntu-latest
needs:
- build
- npsim-gun
strategy:
matrix:
CC: [gcc]
particle: [e]
detector_config: [craterlake]
benchmark_plugins:
- EcalBarrelScFiCheck
- femc_studies
- lfhcal_studies
- tof_efficiency
- TRACKINGcheck
- tracking_efficiency
- tracking_occupancy
steps:
- name: Checkout .github
uses: actions/checkout@v4
with:
sparse-checkout: .github
- name: Download install directory
uses: actions/download-artifact@v4
with:
name: install-${{ matrix.CC }}-eic-shell-Release
- name: Unarchive install directory
run: tar -xaf install.tar.zst
- uses: actions/download-artifact@v4
with:
name: sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Run EICrecon
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export DETECTOR_CONFIG=${DETECTOR}_${{ matrix.detector_config }}
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
export JANA_PLUGIN_PATH=$PWD/install/lib/EICrecon/plugins${JANA_PLUGIN_PATH:+:${JANA_PLUGIN_PATH}}
$PWD/install/bin/eicrecon -Pplugins=${{ matrix.benchmark_plugins }} -Phistsfile=rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}_${{ matrix.benchmark_plugins }}.hists.root -Ppodio:output_file=rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root -Pplugins=dump_flags,janadot -Pdump_flags:json=${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json -Pjana:warmup_timeout=0 -Pjana:timeout=0
- uses: actions/upload-artifact@v4
with:
name: rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}_${{ matrix.benchmark_plugins }}.hists.root
path: rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}_${{ matrix.benchmark_plugins }}.hists.root
if-no-files-found: error
eicrecon-gun:
runs-on: ubuntu-latest
needs:
- build
- npsim-gun
strategy:
matrix:
CC: [clang]
particle: [pi, e]
detector_config: [craterlake]
steps:
- name: Checkout .github
uses: actions/checkout@v4
with:
sparse-checkout: .github
- name: Download install directory
uses: actions/download-artifact@v4
with:
name: install-${{ matrix.CC }}-eic-shell-Release
- name: Uncompress install directory
run: tar -xaf install.tar.zst
- uses: actions/download-artifact@v4
with:
name: sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Check dynamic library loader paths
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
ldd -r install/lib/*.so install/lib/EICrecon/plugins/*.so
- name: Run EICrecon
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export DETECTOR_CONFIG=${DETECTOR}_${{ matrix.detector_config }}
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
export JANA_PLUGIN_PATH=$PWD/install/lib/EICrecon/plugins:/usr/local/plugins
$PWD/install/bin/eicrecon -Ppodio:output_file=rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root sim_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4hep.root -Pplugins=dump_flags,janadot -Pdump_flags:json=${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json -Pjana:warmup_timeout=0 -Pjana:timeout=0
dot -Tsvg jana.dot > jana.svg
mv jana.dot rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.dot
mv jana.svg rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.svg
- uses: actions/upload-artifact@v4
with:
name: rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
path: rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
if-no-files-found: error
- uses: actions/upload-artifact@v4
with:
name: ${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json
path: ${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json
if-no-files-found: error
- uses: actions/upload-artifact@v4
with:
name: rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.dot
path: |
*.dot
*.svg
if-no-files-found: error
- name: Download previous artifact
id: download_previous_artifact
uses: dawidd6/action-download-artifact@v3
with:
branch: ${{ github.event.pull_request.base.ref || github.ref_name }}
path: ref/
name: rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
workflow: ".github/workflows/linux-eic-shell.yml"
workflow_conclusion: "completed"
if_no_artifact_found: warn
- name: Compare to previous artifacts
uses: eic/run-cvmfs-osg-eic-shell@main
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export PYTHONPATH=$HOME/.local/lib/python3.10/site-packages:$PYTHONPATH
mkdir capybara-reports
capybara bara ref/rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
mv capybara-reports rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}
touch .rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}
- uses: actions/upload-artifact@v4
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
with:
name: rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.capy
path: |
.rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}
rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}/
if-no-files-found: error
- name: Checkout epic-capybara
uses: actions/checkout@v4
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
with:
repository: 'eic/epic-capybara'
path: epic-capybara
- name: Compare to previous artifacts (local capybara)
uses: eic/run-cvmfs-osg-eic-shell@main
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
echo "::group::diff ref -> new"
python3 ${{ github.workspace }}/epic-capybara/bara.py ref/rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root rec_${{ matrix.particle }}_1GeV_20GeV_${{ matrix.detector_config }}.edm4eic.root
echo "::endgroup::"
eicrecon-gun-EcalLumiSpec:
runs-on: ubuntu-latest
needs:
- build
- npsim-gun-EcalLumiSpec
strategy:
matrix:
CC: [clang]
particle: [e]
detector_config: [ip6_extended]
steps:
- name: Checkout .github
uses: actions/checkout@v4
with:
sparse-checkout: .github
- name: Download install directory
uses: actions/download-artifact@v4
with:
name: install-${{ matrix.CC }}-eic-shell-Release
- name: Unarchive install directory
run: tar -xaf install.tar.zst
- uses: actions/download-artifact@v4
with:
name: sim_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4hep.root
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Run EICrecon
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export DETECTOR_CONFIG=${DETECTOR}_${{ matrix.detector_config }}
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
export JANA_PLUGIN_PATH=$PWD/install/lib/EICrecon/plugins:/usr/local/plugins
$PWD/install/bin/eicrecon -Ppodio:output_file=rec_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4eic.root sim_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4hep.root -Ppodio:output_include_collections=EcalLumiSpecRawHits,EcalLumiSpecRecHits,EcalLumiSpecClusters,EcalLumiSpecClusterAssociations -PLUMISPECCAL:EcalLumiSpecIslandProtoClusters:splitCluster=1 -Pplugins=dump_flags,janadot -Pdump_flags:json=${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json -Pjana:warmup_timeout=0 -Pjana:timeout=0
- uses: actions/upload-artifact@v4
with:
name: rec_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4eic.root
path: rec_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.edm4eic.root
if-no-files-found: error
- uses: actions/upload-artifact@v4
with:
name: ${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json
path: ${{ matrix.particle }}_${{ matrix.detector_config }}_flags.json
if-no-files-found: error
- uses: actions/upload-artifact@v4
with:
name: rec_${{ matrix.particle }}_EcalLumiSpec_${{ matrix.detector_config }}.dot
path: jana.dot
if-no-files-found: error
eicrecon-dis:
runs-on: ubuntu-latest
needs:
- build
- npsim-dis
strategy:
matrix:
CC: [clang]
beam: [5x41, 10x100, 18x275]
minq2: [1, 1000]
detector_config: [craterlake]
exclude:
- beam: 5x41
minq2: 1000
steps:
- name: Checkout .github
uses: actions/checkout@v4
with:
sparse-checkout: .github
- name: Download install directory
uses: actions/download-artifact@v4
with:
name: install-${{ matrix.CC }}-eic-shell-Release
- name: Unarchive install directory
run: tar -xaf install.tar.zst
- uses: actions/download-artifact@v4
with:
name: sim_dis_${{ matrix.beam }}_minQ2=${{ matrix.minq2 }}_${{ matrix.detector_config }}.edm4hep.root
- uses: cvmfs-contrib/github-action-cvmfs@v4
- name: Run EICrecon
uses: eic/run-cvmfs-osg-eic-shell@main
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
export DETECTOR_CONFIG=${DETECTOR}_${{ matrix.detector_config }}
export LD_LIBRARY_PATH=$PWD/install/lib:$LD_LIBRARY_PATH
export JANA_PLUGIN_PATH=$PWD/install/lib/EICrecon/plugins:/usr/local/plugins
$PWD/install/bin/eicrecon -Ppodio:output_file=rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4eic.root sim_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4hep.root -Pplugins=janadot -Pjana:warmup_timeout=0 -Pjana:timeout=0
dot -Tsvg jana.dot > jana.svg
mv jana.dot rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.dot
mv jana.svg rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.svg
- uses: actions/upload-artifact@v4
with:
name: rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4eic.root
path: rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4eic.root
if-no-files-found: error
- uses: actions/upload-artifact@v4
with:
name: rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.dot
path: |
*.dot
*.svg
if-no-files-found: error
- name: Download previous artifact
id: download_previous_artifact
uses: dawidd6/action-download-artifact@v3
with:
branch: ${{ github.event.pull_request.base.ref || github.ref_name }}
path: ref/
name: rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4eic.root
workflow: ".github/workflows/linux-eic-shell.yml"
workflow_conclusion: "completed"
if_no_artifact_found: warn
- name: Compare to previous artifacts
uses: eic/run-cvmfs-osg-eic-shell@main
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
pip install 'pygithub>=2' 'bokeh>=3'
export PYTHONPATH=$HOME/.local/lib/python3.10/site-packages:$PYTHONPATH
mkdir capybara-reports
capybara bara ref/rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4eic.root rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4eic.root
mv capybara-reports rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}
touch .rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}
- uses: actions/upload-artifact@v4
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
with:
name: rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.capy
path: |
.rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}
rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}/
if-no-files-found: error
- name: Checkout epic-capybara
uses: actions/checkout@v4
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
with:
repository: 'eic/epic-capybara'
path: epic-capybara
- name: Build and install epic-capybara
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
run: |
pip install hatch
cd epic-capybara
hatch build
pip install dist/*.whl
- name: Compare to previous artifacts (local capybara)
uses: eic/run-cvmfs-osg-eic-shell@main
if: steps.download_previous_artifact.outputs.found_artifact == 'true'
with:
platform-release: "${{ env.platform-release }}"
setup: "/opt/detector/epic-${{ env.detector-version }}/setup.sh"
run: |
echo "::group::pip install"
python3 -m pip install -r ${{ github.workspace }}/.github/requirements.txt
echo "::endgroup::"
echo "::group::diff ref -> new"
python3 ${{ github.workspace }}/epic-capybara/bara.py ref/rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4eic.root rec_dis_${{matrix.beam}}_minQ2=${{matrix.minq2}}_${{ matrix.detector_config }}.edm4eic.root
echo "::endgroup::"
trigger-container:
runs-on: ubuntu-latest
if: ${{ github.event_name != 'merge_group' && github.actor != 'dependabot[bot]' }}
needs:
- eicrecon-gun
steps:
- uses: eic/trigger-gitlab-ci@v2
id: trigger
with:
url: https://eicweb.phy.anl.gov
project_id: 290
token: ${{ secrets.EICWEB_CONTAINER_TRIGGER }}
ref_name: master
variables: |
GITHUB_REPOSITORY=${{ github.repository }}
GITHUB_SHA=${{ github.event.pull_request.head.sha || github.sha }}
GITHUB_PR=${{ github.event.pull_request.number }}
EICRECON_VERSION="${{ github.event.pull_request.head.ref || github.ref_name }}"
- run: |
gh api \
--method POST \
-H "Accept: application/vnd.github+json" \
/repos/${{ github.repository }}/statuses/${{ github.event.pull_request.head.sha || github.sha }} \
-f state="pending" \
-f target_url="${{ steps.trigger.outputs.web_url }}" \
-f description="Triggered... $(TZ=America/New_York date)" \
-f context="eicweb/eic_container"
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
build-docs:
runs-on: ubuntu-latest
needs:
- eicrecon-gun
- eicrecon-dis
container:
image: alpine:latest
volumes:
- /home/runner/work/_temp:/home/runner/work/_temp
# FIXME hard-coded: see https://github.com/actions/upload-pages-artifact/pull/14
steps:
- uses: actions/checkout@v4
- name: Copy docs
run: |
cp -r docs publishing_docs
- name: Run Doxygen
if: github.ref_name == 'main'
run: |
apk add doxygen graphviz ttf-freefont
doxygen Doxyfile
mv html publishing_docs/doxygen
- uses: actions/upload-artifact/merge@v4
with:
name: jana.dot
pattern: |
*.dot
delete-merged: true
- uses: actions/download-artifact@v4
with:
name: jana.dot
path: publishing_docs/dot/
- uses: actions/upload-artifact/merge@v4
with:
name: capybara
pattern: |
*.capy
delete-merged: true
- uses: actions/upload-artifact@v4
with:
name: docs
path: publishing_docs/
if-no-files-found: error
list-open-prs:
runs-on: ubuntu-latest
outputs:
json: ${{ steps.remap.outputs.json }}
steps:
- uses: octokit/[email protected]
id: query
with:
route: GET /repos/${{ github.repository }}/pulls?state=open
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Remap open PRs
id: remap
uses: nickofthyme/object-remap@v2
with:
__case: snake
include.*.pr: ${{ toJSON(fromJSON(steps.query.outputs.data).*.number) }}
include.*.head_sha: ${{ toJSON(fromJSON(steps.query.outputs.data).*.head.sha) }}
get-docs-from-open-prs:
runs-on: ubuntu-latest
needs:
- build-docs
- list-open-prs
strategy:
matrix: ${{ fromJSON(needs.list-open-prs.outputs.json) }}
fail-fast: false
max-parallel: 4
steps:
- name: Download docs artifact (other PRs)
uses: dawidd6/action-download-artifact@v3
if: github.event.pull_request.number != matrix.pr
with:
commit: ${{ matrix.head_sha }}
path: publishing_docs/pr/${{ matrix.pr }}/
name: docs
workflow: ".github/workflows/linux-eic-shell.yml"
workflow_conclusion: "completed"
if_no_artifact_found: ignore
- name: Download docs artifact (this PR)
uses: actions/download-artifact@v4
if: github.event.pull_request.number == matrix.pr
with:
name: docs
path: publishing_docs/pr/${{ matrix.pr }}/
- name: Download capybara artifact (other PRs)
id: download_capybara
uses: dawidd6/action-download-artifact@v3
if: github.event.pull_request.number != matrix.pr
with:
commit: ${{ matrix.head_sha }}
path: publishing_docs/pr/${{ matrix.pr }}/capybara/
name: capybara
workflow: ".github/workflows/linux-eic-shell.yml"
workflow_conclusion: "completed"
if_no_artifact_found: ignore
- name: Download capybara artifact (this PR)
uses: actions/download-artifact@v4
if: github.event.pull_request.number == matrix.pr
with:
name: capybara
path: publishing_docs/pr/${{ matrix.pr }}/capybara/
- name: Remove doxygen in PR
run: rm -rf publishing_docs/pr/*/doxygen
- uses: actions/upload-artifact@v4
with:
name: github-pages-staging-pr-${{ matrix.pr }}
path: publishing_docs/
if-no-files-found: ignore
get-docs-from-main:
runs-on: ubuntu-latest
needs:
- build-docs
steps:
# Note:
# - If we run this on a non-main branch, we download from main with action-download-artifact.
# - If we run this on the main branch, we have to download from this pipeline with download-artifact.
- name: Download docs artifact (in PR)
uses: dawidd6/action-download-artifact@v3
if: github.ref_name != 'main'
with:
branch: main
path: publishing_docs/
name: docs
workflow: ".github/workflows/linux-eic-shell.yml"
workflow_conclusion: "completed"
if_no_artifact_found: fail
- name: Download docs artifact (on main)
uses: actions/download-artifact@v4
if: github.ref_name == 'main'
with:
name: docs
path: publishing_docs/
- name: Download capybara artifact (in PR)
id: download_capybara
uses: dawidd6/action-download-artifact@v3
if: github.ref_name != 'main'
with:
commit: ${{ matrix.head_sha }}
path: publishing_docs/capybara/
name: capybara
workflow: ".github/workflows/linux-eic-shell.yml"
workflow_conclusion: "completed"
if_no_artifact_found: ignore
- name: Download capybara artifact (on main)
uses: actions/download-artifact@v4
if: github.ref_name == 'main'
with:
name: capybara
path: publishing_docs/capybara/
- name: Populate capybara summary (on main)
if: github.ref_name == 'main' || steps.download_capybara.outputs.found_artifact == 'true'
run: |
echo "### Capybara summary for main" >> publishing_docs/capybara/index.md
find publishing_docs/capybara/ -mindepth 1 -maxdepth 1 -type d -printf \
"- [%f](https://eicrecon.epic-eic.org/capybara/%f/index.html)\n" | sort >> publishing_docs/capybara/index.md
- name: Create capybara step summary (this PR)
if: github.ref_name == 'main'
run: |
cat publishing_docs/capybara/index.md >> $GITHUB_STEP_SUMMARY
- uses: actions/upload-artifact@v4
with:
name: github-pages-staging-main
path: publishing_docs/
if-no-files-found: error
collect-docs:
runs-on: ubuntu-latest
needs:
- get-docs-from-main
- get-docs-from-open-prs
container:
image: alpine:latest
volumes:
- /home/runner/work/_temp:/home/runner/work/_temp
# FIXME hard-coded: see https://github.com/actions/upload-pages-artifact/pull/14
steps:
- name: Merge GitHub Pages staging artifact