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output path issue #40

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CHAOS324 opened this issue Dec 29, 2022 · 6 comments
Open

output path issue #40

CHAOS324 opened this issue Dec 29, 2022 · 6 comments

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@CHAOS324
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How to set a certain output path for the PHY? My VCF is too large and my C drive is too small to hold the output PHY. Thanks.

@edgardomortiz
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Hi, what was the error exactly? If you write the path to the output folder with the option --output-folder the output files will be saved there. This is described in the README page.

Edgardo

@edgardomortiz
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Also keep in mind that the code was tested on Linux and Mac, from your description of a C drive I guess you are using Windows, it should work too but you have to be careful as to how you type the route to the output folder

@CHAOS324
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CHAOS324 commented Dec 29, 2022 via email

@edgardomortiz
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I understand, in your command add the path to the destination you want with the option --output-folder

Python commands can take multiple options (-i ,--output-folder, etc). Your command will have to be something like the following, where you have to replace path_to_my_D by the actual path in your computer (that can be something like D://myfiles/ but I'm not sure exactly because I haven't used Windows in a while...)

vcf2phylip.py -i myfile.vcf --output-folder path_to_my_D

Edgardo

@CHAOS324
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CHAOS324 commented Dec 31, 2022 via email

@edgardomortiz
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Glad to have helped!

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