diff --git a/locks/requirements-ci.txt b/locks/requirements-ci.txt index d352071..9cba4f9 100644 --- a/locks/requirements-ci.txt +++ b/locks/requirements-ci.txt @@ -2,7 +2,7 @@ affine==2.4.0 ; python_version >= "3.9" and python_version < "4" annotated-types==0.7.0 ; python_version >= "3.9" and python_version < "4.0" anyio==4.4.0 ; python_version >= "3.9" and python_version < "4.0" asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" -attrs==24.1.0 ; python_version >= "3.9" and python_version < "4" +attrs==24.2.0 ; python_version >= "3.9" and python_version < "4" beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" black==24.8.0 ; python_version >= "3.9" and python_version < "4" bottleneck==1.4.0 ; python_version >= "3.9" and python_version < "4" @@ -10,7 +10,7 @@ bump2version==1.0.1 ; python_version >= "3.9" and python_version < "4" cartopy==0.23.0 ; python_version >= "3.9" and python_version < "4" catalogue==2.0.10 ; python_version >= "3.9" and python_version < "4" certifi==2024.7.4 ; python_version >= "3.9" and python_version < "4" -cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" +cffi==1.17.0 ; python_version >= "3.9" and python_version < "4" cfgrib==0.9.14.0 ; python_version >= "3.9" and python_version < "4" cftime==1.6.4 ; python_version >= "3.9" and python_version < "4" charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "4" @@ -22,12 +22,12 @@ colorama==0.4.6 ; python_version >= "3.9" and python_version < "4" and (sys_plat colorlog==6.8.2 ; python_version >= "3.9" and python_version < "4" configobj==5.0.8 ; python_version >= "3.9" and python_version < "4" contourpy==1.2.1 ; python_version >= "3.9" and python_version < "4" -coverage[toml]==7.6.0 ; python_version >= "3.9" and python_version < "4" +coverage[toml]==7.6.1 ; python_version >= "3.9" and python_version < "4" cycler==0.12.1 ; python_version >= "3.9" and python_version < "4" -dask==2024.7.1 ; python_version >= "3.9" and python_version < "4" -dataretrieval==1.0.9 ; python_version >= "3.9" and python_version < "4.0" +dask==2024.8.0 ; python_version >= "3.9" and python_version < "4" +dataretrieval==1.0.10 ; python_version >= "3.9" and python_version < "4.0" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "4.0" -docopt==0.6.2 ; python_version >= "3.9" and python_version < "4" +docopt-ng==0.9.0 ; python_version >= "3.9" and python_version < "4" donfig==0.8.1.post1 ; python_version >= "3.9" and python_version < "4" eccodes==1.7.1 ; python_version >= "3.9" and python_version < "4" erddapy==2.2.0 ; python_version >= "3.9" and python_version < "4.0" @@ -45,8 +45,8 @@ html5lib==1.1 ; python_version >= "3.9" and python_version < "4.0" httpcore==1.0.5 ; python_version >= "3.9" and python_version < "4.0" httpx==0.27.0 ; python_version >= "3.9" and python_version < "4.0" idna==3.7 ; python_version >= "3.9" and python_version < "4" -importlib-metadata==8.2.0 ; python_version >= "3.9" and python_version < "3.12" -importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "4.0" +importlib-metadata==8.4.0 ; python_version >= "3.9" and python_version < "4" +importlib-resources==6.4.4 ; python_version >= "3.9" and python_version < "4" iniconfig==2.0.0 ; python_version >= "3.9" and python_version < "4" jinja2==3.1.4 ; python_version >= "3.9" and python_version < "4" joblib==1.4.2 ; python_version >= "3.9" and python_version < "4" @@ -55,14 +55,14 @@ limits==3.13.0 ; python_version >= "3.9" and python_version < "4.0" llvmlite==0.43.0 ; python_version >= "3.9" and python_version < "4" locket==1.0.0 ; python_version >= "3.9" and python_version < "4" lxml-html-clean==0.2.0 ; python_version >= "3.9" and python_version < "4.0" -lxml==5.2.2 ; python_version >= "3.9" and python_version < "4.0" -lxml[html-clean]==5.2.2 ; python_version >= "3.9" and python_version < "4.0" +lxml==5.3.0 ; python_version >= "3.9" and python_version < "4" +lxml[html-clean]==5.3.0 ; python_version >= "3.9" and python_version < "4.0" markupsafe==2.1.5 ; python_version >= "3.9" and python_version < "4" -matplotlib==3.9.1 ; python_version >= "3.9" and python_version < "4" +matplotlib==3.9.2 ; python_version >= "3.9" and python_version < "4" mypy-extensions==1.0.0 ; python_version >= "3.9" and python_version < "4" -netcdf4==1.7.1.post1 ; python_version >= "3.9" and python_version < "4" +netcdf4==1.7.1.post2 ; python_version >= "3.9" and python_version < "4" numcodecs==0.12.1 ; python_version >= "3.9" and python_version < "4" -numpy==1.26.4 ; python_version >= "3.9" and python_version < "4" +numpy==2.0.1 ; python_version >= "3.9" and python_version < "4" packaging==24.1 ; python_version >= "3.9" and python_version < "4" pandas==2.2.2 ; python_version >= "3.9" and python_version < "4" partd==1.4.2 ; python_version >= "3.9" and python_version < "4" @@ -71,10 +71,11 @@ pillow==10.4.0 ; python_version >= "3.9" and python_version < "4" platformdirs==4.2.2 ; python_version >= "3.9" and python_version < "4" pluggy==1.5.0 ; python_version >= "3.9" and python_version < "4" psutil==6.0.0 ; python_version >= "3.9" and python_version < "4" +pyarrow==17.0.0 ; python_version >= "3.9" and python_version < "4" pycparser==2.22 ; python_version >= "3.9" and python_version < "4" pydantic-core==2.20.1 ; python_version >= "3.9" and python_version < "4.0" pydantic==2.8.2 ; python_version >= "3.9" and python_version < "4.0" -pydap==3.4.1 ; python_version >= "3.9" and python_version < "4" +pydap==3.5 ; python_version >= "3.9" and python_version < "4" pykdtree==1.3.12 ; python_version >= "3.9" and python_version < "4" pymap3d==3.1.0 ; python_version >= "3.9" and python_version < "4" pyogrio==0.9.0 ; python_version >= "3.9" and python_version < "4" @@ -87,30 +88,30 @@ pytest-xdist==3.6.1 ; python_version >= "3.9" and python_version < "4" pytest==8.3.2 ; python_version >= "3.9" and python_version < "4" python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "4" pytz==2024.1 ; python_version >= "3.9" and python_version < "4" -pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" +pyyaml==6.0.2 ; python_version >= "3.9" and python_version < "4" rasterio==1.3.10 ; python_version >= "3.9" and python_version < "4" requests==2.32.3 ; python_version >= "3.9" and python_version < "4" rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" scikit-learn==1.5.1 ; python_version >= "3.9" and python_version < "4" scipy==1.13.1 ; python_version >= "3.9" and python_version < "4" searvey==0.3.13 ; python_version >= "3.9" and python_version < "4.0" -setuptools==72.1.0 ; python_version >= "3.9" and python_version < "4" -shapely==2.0.5 ; python_version >= "3.9" and python_version < "4" +setuptools==73.0.1 ; python_version >= "3.9" and python_version < "4" +shapely==2.0.6 ; python_version >= "3.9" and python_version < "4" six==1.16.0 ; python_version >= "3.9" and python_version < "4" sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" -soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +soupsieve==2.6 ; python_version >= "3.9" and python_version < "4" srsly==2.4.8 ; python_version >= "3.9" and python_version < "4" threadpoolctl==3.5.0 ; python_version >= "3.9" and python_version < "4" tomli==2.0.1 ; python_version >= "3.9" and python_full_version <= "3.11.0a6" toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" -tqdm==4.66.4 ; python_version >= "3.9" and python_version < "4" +tqdm==4.66.5 ; python_version >= "3.9" and python_version < "4" typing-extensions==4.12.2 ; python_version >= "3.9" and python_version < "4.0" tzdata==2024.1 ; python_version >= "3.9" and python_version < "4" urllib3==2.2.2 ; python_version >= "3.9" and python_version < "4" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "4.0" -webob==1.8.7 ; python_version >= "3.9" and python_version < "4" +webob==1.8.8 ; python_version >= "3.9" and python_version < "4" wrapt==1.16.0 ; python_version >= "3.9" and python_version < "4.0" xarray==2024.7.0 ; python_version >= "3.9" and python_version < "4" zarr==2.18.2 ; python_version >= "3.9" and python_version < "4" -zipp==3.19.2 ; python_version >= "3.9" and python_version < "3.12" +zipp==3.20.0 ; python_version >= "3.9" and python_version < "4" diff --git a/locks/requirements-full.txt b/locks/requirements-full.txt index c1dc8cf..de5eed9 100644 --- a/locks/requirements-full.txt +++ b/locks/requirements-full.txt @@ -7,9 +7,8 @@ argon2-cffi-bindings==21.2.0 ; python_version >= "3.9" and python_version < "4" argon2-cffi==23.1.0 ; python_version >= "3.9" and python_version < "4" asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" asttokens==2.4.1 ; python_version >= "3.9" and python_version < "4" -attrs==24.1.0 ; python_version >= "3.9" and python_version < "4" -babel==2.15.0 ; python_version >= "3.9" and python_version < "4" -backports-strenum==1.3.1 ; python_version >= "3.9" and python_version < "3.11" +attrs==24.2.0 ; python_version >= "3.9" and python_version < "4" +babel==2.16.0 ; python_version >= "3.9" and python_version < "4" beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" black==24.8.0 ; python_version >= "3.9" and python_version < "4" bleach==6.1.0 ; python_version >= "3.9" and python_version < "4" @@ -19,7 +18,7 @@ bump2version==1.0.1 ; python_version >= "3.9" and python_version < "4" cartopy==0.23.0 ; python_version >= "3.9" and python_version < "4" catalogue==2.0.10 ; python_version >= "3.9" and python_version < "4" certifi==2024.7.4 ; python_version >= "3.9" and python_version < "4" -cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" +cffi==1.17.0 ; python_version >= "3.9" and python_version < "4" cfgrib==0.9.14.0 ; python_version >= "3.9" and python_version < "4" cftime==1.6.4 ; python_version >= "3.9" and python_version < "4" charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "4" @@ -33,16 +32,16 @@ colorlog==6.8.2 ; python_version >= "3.9" and python_version < "4" comm==0.2.2 ; python_version >= "3.9" and python_version < "4" configobj==5.0.8 ; python_version >= "3.9" and python_version < "4" contourpy==1.2.1 ; python_version >= "3.9" and python_version < "4" -coverage[toml]==7.6.0 ; python_version >= "3.9" and python_version < "4" +coverage[toml]==7.6.1 ; python_version >= "3.9" and python_version < "4" cycler==0.12.1 ; python_version >= "3.9" and python_version < "4" -dask==2024.7.1 ; python_version >= "3.9" and python_version < "4" -dataretrieval==1.0.9 ; python_version >= "3.9" and python_version < "4.0" +dask==2024.8.0 ; python_version >= "3.9" and python_version < "4" +dataretrieval==1.0.10 ; python_version >= "3.9" and python_version < "4.0" datashader==0.16.3 ; python_version >= "3.9" and python_version < "4" -debugpy==1.8.3 ; python_version >= "3.9" and python_version < "4" +debugpy==1.8.5 ; python_version >= "3.9" and python_version < "4" decorator==5.1.1 ; python_version >= "3.9" and python_version < "4" defusedxml==0.7.1 ; python_version >= "3.9" and python_version < "4" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "4.0" -docopt==0.6.2 ; python_version >= "3.9" and python_version < "4" +docopt-ng==0.9.0 ; python_version >= "3.9" and python_version < "4" donfig==0.8.1.post1 ; python_version >= "3.9" and python_version < "4" eccodes==1.7.1 ; python_version >= "3.9" and python_version < "4" envisage==7.0.3 ; python_version >= "3.9" and python_version < "4" @@ -60,7 +59,7 @@ geopandas==1.0.1 ; python_version >= "3.9" and python_version < "4" geoviews[recommended]==1.12.0 ; python_version >= "3.9" and python_version < "4" ghp-import==2.1.0 ; python_version >= "3.9" and python_version < "4" gmsh==4.13.1 ; python_version >= "3.9" and python_version < "4" -griffe==0.48.0 ; python_version >= "3.9" and python_version < "4" +griffe==1.1.1 ; python_version >= "3.9" and python_version < "4" h11==0.14.0 ; python_version >= "3.9" and python_version < "4.0" holoviews==1.19.1 ; python_version >= "3.9" and python_version < "4" html5lib==1.1 ; python_version >= "3.9" and python_version < "4.0" @@ -68,8 +67,8 @@ httpcore==1.0.5 ; python_version >= "3.9" and python_version < "4.0" httpx==0.27.0 ; python_version >= "3.9" and python_version < "4.0" hvplot==0.10.0 ; python_version >= "3.9" and python_version < "4" idna==3.7 ; python_version >= "3.9" and python_version < "4" -importlib-metadata==8.2.0 ; python_version >= "3.9" and python_version < "3.12" -importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "4.0" +importlib-metadata==8.4.0 ; python_version >= "3.9" and python_version < "4" +importlib-resources==6.4.4 ; python_version >= "3.9" and python_version < "4" iniconfig==2.0.0 ; python_version >= "3.9" and python_version < "4" ipydatawidgets==4.3.2 ; python_version >= "3.9" and python_version < "4" ipykernel==6.29.5 ; python_version >= "3.9" and python_version < "4" @@ -97,24 +96,24 @@ linkify-it-py==2.0.3 ; python_version >= "3.9" and python_version < "4" llvmlite==0.43.0 ; python_version >= "3.9" and python_version < "4" locket==1.0.0 ; python_version >= "3.9" and python_version < "4" lxml-html-clean==0.2.0 ; python_version >= "3.9" and python_version < "4.0" -lxml==5.2.2 ; python_version >= "3.9" and python_version < "4.0" -lxml[html-clean]==5.2.2 ; python_version >= "3.9" and python_version < "4.0" +lxml==5.3.0 ; python_version >= "3.9" and python_version < "4" +lxml[html-clean]==5.3.0 ; python_version >= "3.9" and python_version < "4.0" markdown-it-py==3.0.0 ; python_version >= "3.9" and python_version < "4" -markdown==3.6 ; python_version >= "3.9" and python_version < "4" +markdown==3.7 ; python_version >= "3.9" and python_version < "4" markupsafe==2.1.5 ; python_version >= "3.9" and python_version < "4" matplotlib-inline==0.1.7 ; python_version >= "3.9" and python_version < "4" -matplotlib==3.9.1 ; python_version >= "3.9" and python_version < "4" +matplotlib==3.9.2 ; python_version >= "3.9" and python_version < "4" mayavi==4.8.2 ; python_version >= "3.9" and python_version < "4" mdit-py-plugins==0.4.1 ; python_version >= "3.9" and python_version < "4" mdurl==0.1.2 ; python_version >= "3.9" and python_version < "4" mergedeep==1.3.4 ; python_version >= "3.9" and python_version < "4" mistune==3.0.2 ; python_version >= "3.9" and python_version < "4" -mkdocs-autorefs==1.0.1 ; python_version >= "3.9" and python_version < "4" +mkdocs-autorefs==1.1.0 ; python_version >= "3.9" and python_version < "4" mkdocs-get-deps==0.2.0 ; python_version >= "3.9" and python_version < "4" mkdocs-material-extensions==1.3.1 ; python_version >= "3.9" and python_version < "4" -mkdocs-material==9.5.31 ; python_version >= "3.9" and python_version < "4" +mkdocs-material==9.5.32 ; python_version >= "3.9" and python_version < "4" mkdocs==1.6.0 ; python_version >= "3.9" and python_version < "4" -mkdocstrings-python==1.10.7 ; python_version >= "3.9" and python_version < "4" +mkdocstrings-python==1.10.8 ; python_version >= "3.9" and python_version < "4" mkdocstrings==0.25.2 ; python_version >= "3.9" and python_version < "4" multipledispatch==1.0.0 ; python_version >= "3.9" and python_version < "4" mypy-extensions==1.0.0 ; python_version >= "3.9" and python_version < "4" @@ -122,11 +121,11 @@ nbclient==0.10.0 ; python_version >= "3.9" and python_version < "4" nbconvert==7.16.4 ; python_version >= "3.9" and python_version < "4" nbformat==5.10.4 ; python_version >= "3.9" and python_version < "4" nest-asyncio==1.6.0 ; python_version >= "3.9" and python_version < "4" -netcdf4==1.7.1.post1 ; python_version >= "3.9" and python_version < "4" +netcdf4==1.7.1.post2 ; python_version >= "3.9" and python_version < "4" notebook==6.4.13 ; python_version >= "3.9" and python_version < "4" numba==0.60.0 ; python_version >= "3.9" and python_version < "4" numcodecs==0.12.1 ; python_version >= "3.9" and python_version < "4" -numpy==1.26.4 ; python_version >= "3.9" and python_version < "4" +numpy==2.0.1 ; python_version >= "3.9" and python_version < "4" packaging==24.1 ; python_version >= "3.9" and python_version < "4" paginate==0.5.6 ; python_version >= "3.9" and python_version < "4" pandas==2.2.2 ; python_version >= "3.9" and python_version < "4" @@ -151,7 +150,7 @@ pycparser==2.22 ; python_version >= "3.9" and python_version < "4" pyct==0.5.0 ; python_version >= "3.9" and python_version < "4" pydantic-core==2.20.1 ; python_version >= "3.9" and python_version < "4.0" pydantic==2.8.2 ; python_version >= "3.9" and python_version < "4.0" -pydap==3.4.1 ; python_version >= "3.9" and python_version < "4" +pydap==3.5 ; python_version >= "3.9" and python_version < "4" pyface==8.0.0 ; python_version >= "3.9" and python_version < "4" pygments==2.18.0 ; python_version >= "3.9" and python_version < "4" pykdtree==1.3.12 ; python_version >= "3.9" and python_version < "4" @@ -171,25 +170,25 @@ pyviz-comms==3.0.3 ; python_version >= "3.9" and python_version < "4" pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.9" and python_version < "4" pywinpty==2.0.13 ; python_version >= "3.9" and python_version < "4" and os_name == "nt" pyyaml-env-tag==0.1 ; python_version >= "3.9" and python_version < "4" -pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" -pyzmq==26.0.3 ; python_version >= "3.9" and python_version < "4" +pyyaml==6.0.2 ; python_version >= "3.9" and python_version < "4" +pyzmq==26.2.0 ; python_version >= "3.9" and python_version < "4" rasterio==1.3.10 ; python_version >= "3.9" and python_version < "4" referencing==0.35.1 ; python_version >= "3.9" and python_version < "4" regex==2024.7.24 ; python_version >= "3.9" and python_version < "4" requests==2.32.3 ; python_version >= "3.9" and python_version < "4" retrying==1.3.4 ; python_version >= "3.9" and python_version < "4" rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" -rpds-py==0.19.1 ; python_version >= "3.9" and python_version < "4" +rpds-py==0.20.0 ; python_version >= "3.9" and python_version < "4" scikit-learn==1.5.1 ; python_version >= "3.9" and python_version < "4" scipy==1.13.1 ; python_version >= "3.9" and python_version < "4" searvey==0.3.13 ; python_version >= "3.9" and python_version < "4.0" send2trash==1.8.3 ; python_version >= "3.9" and python_version < "4" -setuptools==72.1.0 ; python_version >= "3.9" and python_version < "4" -shapely==2.0.5 ; python_version >= "3.9" and python_version < "4" +setuptools==73.0.1 ; python_version >= "3.9" and python_version < "4" +shapely==2.0.6 ; python_version >= "3.9" and python_version < "4" six==1.16.0 ; python_version >= "3.9" and python_version < "4" sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" -soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +soupsieve==2.6 ; python_version >= "3.9" and python_version < "4" spatialpandas==0.4.10 ; python_version >= "3.9" and python_version < "4" srsly==2.4.8 ; python_version >= "3.9" and python_version < "4" stack-data==0.6.3 ; python_version >= "3.9" and python_version < "4" @@ -199,7 +198,7 @@ tinycss2==1.3.0 ; python_version >= "3.9" and python_version < "4" tomli==2.0.1 ; python_version >= "3.9" and python_full_version <= "3.11.0a6" toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" tornado==6.4.1 ; python_version >= "3.9" and python_version < "4" -tqdm==4.66.4 ; python_version >= "3.9" and python_version < "4" +tqdm==4.66.5 ; python_version >= "3.9" and python_version < "4" traitlets==5.6.0 ; python_version >= "3.9" and python_version < "4" traits==6.4.3 ; python_version >= "3.9" and python_version < "4" traitsui==8.0.0 ; python_version >= "3.9" and python_version < "4" @@ -209,14 +208,14 @@ tzdata==2024.1 ; python_version >= "3.9" and python_version < "4" uc-micro-py==1.0.3 ; python_version >= "3.9" and python_version < "4" urllib3==2.2.2 ; python_version >= "3.9" and python_version < "4" vtk==9.3.1 ; python_version >= "3.9" and python_version < "4" -watchdog==4.0.1 ; python_version >= "3.9" and python_version < "4" +watchdog==4.0.2 ; python_version >= "3.9" and python_version < "4" wcwidth==0.2.13 ; python_version >= "3.9" and python_version < "4" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "4.0" -webob==1.8.7 ; python_version >= "3.9" and python_version < "4" +webob==1.8.8 ; python_version >= "3.9" and python_version < "4" widgetsnbextension==3.6.8 ; python_version >= "3.9" and python_version < "4" wrapt==1.16.0 ; python_version >= "3.9" and python_version < "4.0" xarray==2024.7.0 ; python_version >= "3.9" and python_version < "4" xyzservices==2024.6.0 ; python_version >= "3.9" and python_version < "4" zarr==2.18.2 ; python_version >= "3.9" and python_version < "4" -zipp==3.19.2 ; python_version >= "3.9" and python_version < "3.12" +zipp==3.20.0 ; python_version >= "3.9" and python_version < "4" zstandard==0.23.0 ; python_version >= "3.9" and python_version < "4" diff --git a/locks/requirements-viz.txt b/locks/requirements-viz.txt index 782fb4f..c6fb28d 100644 --- a/locks/requirements-viz.txt +++ b/locks/requirements-viz.txt @@ -7,14 +7,14 @@ argon2-cffi-bindings==21.2.0 ; python_version >= "3.9" and python_version < "4" argon2-cffi==23.1.0 ; python_version >= "3.9" and python_version < "4" asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" asttokens==2.4.1 ; python_version >= "3.9" and python_version < "4" -attrs==24.1.0 ; python_version >= "3.9" and python_version < "4" +attrs==24.2.0 ; python_version >= "3.9" and python_version < "4" beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" bleach==6.1.0 ; python_version >= "3.9" and python_version < "4" bokeh==3.4.3 ; python_version >= "3.9" and python_version < "4" bottleneck==1.4.0 ; python_version >= "3.9" and python_version < "4" cartopy==0.23.0 ; python_version >= "3.9" and python_version < "4" certifi==2024.7.4 ; python_version >= "3.9" and python_version < "4" -cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" +cffi==1.17.0 ; python_version >= "3.9" and python_version < "4" cfgrib==0.9.14.0 ; python_version >= "3.9" and python_version < "4" cftime==1.6.4 ; python_version >= "3.9" and python_version < "4" charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "4" @@ -29,14 +29,14 @@ comm==0.2.2 ; python_version >= "3.9" and python_version < "4" configobj==5.0.8 ; python_version >= "3.9" and python_version < "4" contourpy==1.2.1 ; python_version >= "3.9" and python_version < "4" cycler==0.12.1 ; python_version >= "3.9" and python_version < "4" -dask==2024.7.1 ; python_version >= "3.9" and python_version < "4" -dataretrieval==1.0.9 ; python_version >= "3.9" and python_version < "4.0" +dask==2024.8.0 ; python_version >= "3.9" and python_version < "4" +dataretrieval==1.0.10 ; python_version >= "3.9" and python_version < "4.0" datashader==0.16.3 ; python_version >= "3.9" and python_version < "4" -debugpy==1.8.3 ; python_version >= "3.9" and python_version < "4" +debugpy==1.8.5 ; python_version >= "3.9" and python_version < "4" decorator==5.1.1 ; python_version >= "3.9" and python_version < "4" defusedxml==0.7.1 ; python_version >= "3.9" and python_version < "4" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "4.0" -docopt==0.6.2 ; python_version >= "3.9" and python_version < "4" +docopt-ng==0.9.0 ; python_version >= "3.9" and python_version < "4" donfig==0.8.1.post1 ; python_version >= "3.9" and python_version < "4" eccodes==1.7.1 ; python_version >= "3.9" and python_version < "4" envisage==7.0.3 ; python_version >= "3.9" and python_version < "4" @@ -59,8 +59,8 @@ httpcore==1.0.5 ; python_version >= "3.9" and python_version < "4.0" httpx==0.27.0 ; python_version >= "3.9" and python_version < "4.0" hvplot==0.10.0 ; python_version >= "3.9" and python_version < "4" idna==3.7 ; python_version >= "3.9" and python_version < "4" -importlib-metadata==8.2.0 ; python_version >= "3.9" and python_version < "3.12" -importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "4.0" +importlib-metadata==8.4.0 ; python_version >= "3.9" and python_version < "4" +importlib-resources==6.4.4 ; python_version >= "3.9" and python_version < "4" ipydatawidgets==4.3.2 ; python_version >= "3.9" and python_version < "4" ipykernel==6.29.5 ; python_version >= "3.9" and python_version < "4" ipympl==0.9.4 ; python_version >= "3.9" and python_version < "4" @@ -87,13 +87,13 @@ linkify-it-py==2.0.3 ; python_version >= "3.9" and python_version < "4" llvmlite==0.43.0 ; python_version >= "3.9" and python_version < "4" locket==1.0.0 ; python_version >= "3.9" and python_version < "4" lxml-html-clean==0.2.0 ; python_version >= "3.9" and python_version < "4.0" -lxml==5.2.2 ; python_version >= "3.9" and python_version < "4.0" -lxml[html-clean]==5.2.2 ; python_version >= "3.9" and python_version < "4.0" +lxml==5.3.0 ; python_version >= "3.9" and python_version < "4" +lxml[html-clean]==5.3.0 ; python_version >= "3.9" and python_version < "4.0" markdown-it-py==3.0.0 ; python_version >= "3.9" and python_version < "4" -markdown==3.6 ; python_version >= "3.9" and python_version < "4" +markdown==3.7 ; python_version >= "3.9" and python_version < "4" markupsafe==2.1.5 ; python_version >= "3.9" and python_version < "4" matplotlib-inline==0.1.7 ; python_version >= "3.9" and python_version < "4" -matplotlib==3.9.1 ; python_version >= "3.9" and python_version < "4" +matplotlib==3.9.2 ; python_version >= "3.9" and python_version < "4" mayavi==4.8.2 ; python_version >= "3.9" and python_version < "4" mdit-py-plugins==0.4.1 ; python_version >= "3.9" and python_version < "4" mdurl==0.1.2 ; python_version >= "3.9" and python_version < "4" @@ -103,11 +103,11 @@ nbclient==0.10.0 ; python_version >= "3.9" and python_version < "4" nbconvert==7.16.4 ; python_version >= "3.9" and python_version < "4" nbformat==5.10.4 ; python_version >= "3.9" and python_version < "4" nest-asyncio==1.6.0 ; python_version >= "3.9" and python_version < "4" -netcdf4==1.7.1.post1 ; python_version >= "3.9" and python_version < "4" +netcdf4==1.7.1.post2 ; python_version >= "3.9" and python_version < "4" notebook==6.4.13 ; python_version >= "3.9" and python_version < "4" numba==0.60.0 ; python_version >= "3.9" and python_version < "4" numcodecs==0.12.1 ; python_version >= "3.9" and python_version < "4" -numpy==1.26.4 ; python_version >= "3.9" and python_version < "4" +numpy==2.0.1 ; python_version >= "3.9" and python_version < "4" packaging==24.1 ; python_version >= "3.9" and python_version < "4" pandas==2.2.2 ; python_version >= "3.9" and python_version < "4" pandocfilters==1.5.1 ; python_version >= "3.9" and python_version < "4" @@ -129,7 +129,7 @@ pycparser==2.22 ; python_version >= "3.9" and python_version < "4" pyct==0.5.0 ; python_version >= "3.9" and python_version < "4" pydantic-core==2.20.1 ; python_version >= "3.9" and python_version < "4.0" pydantic==2.8.2 ; python_version >= "3.9" and python_version < "4.0" -pydap==3.4.1 ; python_version >= "3.9" and python_version < "4" +pydap==3.5 ; python_version >= "3.9" and python_version < "4" pyface==8.0.0 ; python_version >= "3.9" and python_version < "4" pygments==2.18.0 ; python_version >= "3.9" and python_version < "4" pykdtree==1.3.12 ; python_version >= "3.9" and python_version < "4" @@ -144,24 +144,24 @@ pytz==2024.1 ; python_version >= "3.9" and python_version < "4" pyviz-comms==3.0.3 ; python_version >= "3.9" and python_version < "4" pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.9" and python_version < "4" pywinpty==2.0.13 ; python_version >= "3.9" and python_version < "4" and os_name == "nt" -pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" -pyzmq==26.0.3 ; python_version >= "3.9" and python_version < "4" +pyyaml==6.0.2 ; python_version >= "3.9" and python_version < "4" +pyzmq==26.2.0 ; python_version >= "3.9" and python_version < "4" rasterio==1.3.10 ; python_version >= "3.9" and python_version < "4" referencing==0.35.1 ; python_version >= "3.9" and python_version < "4" requests==2.32.3 ; python_version >= "3.9" and python_version < "4" retrying==1.3.4 ; python_version >= "3.9" and python_version < "4" rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" -rpds-py==0.19.1 ; python_version >= "3.9" and python_version < "4" +rpds-py==0.20.0 ; python_version >= "3.9" and python_version < "4" scikit-learn==1.5.1 ; python_version >= "3.9" and python_version < "4" scipy==1.13.1 ; python_version >= "3.9" and python_version < "4" searvey==0.3.13 ; python_version >= "3.9" and python_version < "4.0" send2trash==1.8.3 ; python_version >= "3.9" and python_version < "4" -setuptools==72.1.0 ; python_version >= "3.9" and python_version < "4" -shapely==2.0.5 ; python_version >= "3.9" and python_version < "4" +setuptools==73.0.1 ; python_version >= "3.9" and python_version < "4" +shapely==2.0.6 ; python_version >= "3.9" and python_version < "4" six==1.16.0 ; python_version >= "3.9" and python_version < "4" sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" -soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +soupsieve==2.6 ; python_version >= "3.9" and python_version < "4" spatialpandas==0.4.10 ; python_version >= "3.9" and python_version < "4" stack-data==0.6.3 ; python_version >= "3.9" and python_version < "4" terminado==0.18.1 ; python_version >= "3.9" and python_version < "4" @@ -169,7 +169,7 @@ threadpoolctl==3.5.0 ; python_version >= "3.9" and python_version < "4" tinycss2==1.3.0 ; python_version >= "3.9" and python_version < "4" toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" tornado==6.4.1 ; python_version >= "3.9" and python_version < "4" -tqdm==4.66.4 ; python_version >= "3.9" and python_version < "4" +tqdm==4.66.5 ; python_version >= "3.9" and python_version < "4" traitlets==5.6.0 ; python_version >= "3.9" and python_version < "4" traits==6.4.3 ; python_version >= "3.9" and python_version < "4" traitsui==8.0.0 ; python_version >= "3.9" and python_version < "4" @@ -181,11 +181,11 @@ urllib3==2.2.2 ; python_version >= "3.9" and python_version < "4" vtk==9.3.1 ; python_version >= "3.9" and python_version < "4" wcwidth==0.2.13 ; python_version >= "3.9" and python_version < "4" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "4.0" -webob==1.8.7 ; python_version >= "3.9" and python_version < "4" +webob==1.8.8 ; python_version >= "3.9" and python_version < "4" widgetsnbextension==3.6.8 ; python_version >= "3.9" and python_version < "4" wrapt==1.16.0 ; python_version >= "3.9" and python_version < "4.0" xarray==2024.7.0 ; python_version >= "3.9" and python_version < "4" xyzservices==2024.6.0 ; python_version >= "3.9" and python_version < "4" zarr==2.18.2 ; python_version >= "3.9" and python_version < "4" -zipp==3.19.2 ; python_version >= "3.9" and python_version < "3.12" +zipp==3.20.0 ; python_version >= "3.9" and python_version < "4" zstandard==0.23.0 ; python_version >= "3.9" and python_version < "4" diff --git a/locks/requirements.txt b/locks/requirements.txt index 7f91c9c..7c8ad76 100644 --- a/locks/requirements.txt +++ b/locks/requirements.txt @@ -2,12 +2,12 @@ affine==2.4.0 ; python_version >= "3.9" and python_version < "4" annotated-types==0.7.0 ; python_version >= "3.9" and python_version < "4.0" anyio==4.4.0 ; python_version >= "3.9" and python_version < "4.0" asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" -attrs==24.1.0 ; python_version >= "3.9" and python_version < "4" +attrs==24.2.0 ; python_version >= "3.9" and python_version < "4" beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" bottleneck==1.4.0 ; python_version >= "3.9" and python_version < "4" cartopy==0.23.0 ; python_version >= "3.9" and python_version < "4" certifi==2024.7.4 ; python_version >= "3.9" and python_version < "4" -cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" +cffi==1.17.0 ; python_version >= "3.9" and python_version < "4" cfgrib==0.9.14.0 ; python_version >= "3.9" and python_version < "4" cftime==1.6.4 ; python_version >= "3.9" and python_version < "4" charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "4" @@ -20,10 +20,10 @@ colorlog==6.8.2 ; python_version >= "3.9" and python_version < "4" configobj==5.0.8 ; python_version >= "3.9" and python_version < "4" contourpy==1.2.1 ; python_version >= "3.9" and python_version < "4" cycler==0.12.1 ; python_version >= "3.9" and python_version < "4" -dask==2024.7.1 ; python_version >= "3.9" and python_version < "4" -dataretrieval==1.0.9 ; python_version >= "3.9" and python_version < "4.0" +dask==2024.8.0 ; python_version >= "3.9" and python_version < "4" +dataretrieval==1.0.10 ; python_version >= "3.9" and python_version < "4.0" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "4.0" -docopt==0.6.2 ; python_version >= "3.9" and python_version < "4" +docopt-ng==0.9.0 ; python_version >= "3.9" and python_version < "4" donfig==0.8.1.post1 ; python_version >= "3.9" and python_version < "4" eccodes==1.7.1 ; python_version >= "3.9" and python_version < "4" erddapy==2.2.0 ; python_version >= "3.9" and python_version < "4.0" @@ -40,8 +40,8 @@ html5lib==1.1 ; python_version >= "3.9" and python_version < "4.0" httpcore==1.0.5 ; python_version >= "3.9" and python_version < "4.0" httpx==0.27.0 ; python_version >= "3.9" and python_version < "4.0" idna==3.7 ; python_version >= "3.9" and python_version < "4" -importlib-metadata==8.2.0 ; python_version >= "3.9" and python_version < "3.12" -importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "4.0" +importlib-metadata==8.4.0 ; python_version >= "3.9" and python_version < "4" +importlib-resources==6.4.4 ; python_version >= "3.9" and python_version < "4" jinja2==3.1.4 ; python_version >= "3.9" and python_version < "4" joblib==1.4.2 ; python_version >= "3.9" and python_version < "4" kiwisolver==1.4.5 ; python_version >= "3.9" and python_version < "4" @@ -49,23 +49,24 @@ limits==3.13.0 ; python_version >= "3.9" and python_version < "4.0" llvmlite==0.43.0 ; python_version >= "3.9" and python_version < "4" locket==1.0.0 ; python_version >= "3.9" and python_version < "4" lxml-html-clean==0.2.0 ; python_version >= "3.9" and python_version < "4.0" -lxml==5.2.2 ; python_version >= "3.9" and python_version < "4.0" -lxml[html-clean]==5.2.2 ; python_version >= "3.9" and python_version < "4.0" +lxml==5.3.0 ; python_version >= "3.9" and python_version < "4" +lxml[html-clean]==5.3.0 ; python_version >= "3.9" and python_version < "4.0" markupsafe==2.1.5 ; python_version >= "3.9" and python_version < "4" -matplotlib==3.9.1 ; python_version >= "3.9" and python_version < "4" -netcdf4==1.7.1.post1 ; python_version >= "3.9" and python_version < "4" +matplotlib==3.9.2 ; python_version >= "3.9" and python_version < "4" +netcdf4==1.7.1.post2 ; python_version >= "3.9" and python_version < "4" numcodecs==0.12.1 ; python_version >= "3.9" and python_version < "4" -numpy==1.26.4 ; python_version >= "3.9" and python_version < "4" +numpy==2.0.1 ; python_version >= "3.9" and python_version < "4" packaging==24.1 ; python_version >= "3.9" and python_version < "4" pandas==2.2.2 ; python_version >= "3.9" and python_version < "4" partd==1.4.2 ; python_version >= "3.9" and python_version < "4" pillow==10.4.0 ; python_version >= "3.9" and python_version < "4" platformdirs==4.2.2 ; python_version >= "3.9" and python_version < "4" psutil==6.0.0 ; python_version >= "3.9" and python_version < "4" +pyarrow==17.0.0 ; python_version >= "3.9" and python_version < "4" pycparser==2.22 ; python_version >= "3.9" and python_version < "4" pydantic-core==2.20.1 ; python_version >= "3.9" and python_version < "4.0" pydantic==2.8.2 ; python_version >= "3.9" and python_version < "4.0" -pydap==3.4.1 ; python_version >= "3.9" and python_version < "4" +pydap==3.5 ; python_version >= "3.9" and python_version < "4" pykdtree==1.3.12 ; python_version >= "3.9" and python_version < "4" pymap3d==3.1.0 ; python_version >= "3.9" and python_version < "4" pyogrio==0.9.0 ; python_version >= "3.9" and python_version < "4" @@ -75,28 +76,28 @@ pyresample==1.29.0 ; python_version >= "3.9" and python_version < "4" pyshp==2.3.1 ; python_version >= "3.9" and python_version < "4" python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "4" pytz==2024.1 ; python_version >= "3.9" and python_version < "4" -pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" +pyyaml==6.0.2 ; python_version >= "3.9" and python_version < "4" rasterio==1.3.10 ; python_version >= "3.9" and python_version < "4" requests==2.32.3 ; python_version >= "3.9" and python_version < "4" rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" scikit-learn==1.5.1 ; python_version >= "3.9" and python_version < "4" scipy==1.13.1 ; python_version >= "3.9" and python_version < "4" searvey==0.3.13 ; python_version >= "3.9" and python_version < "4.0" -setuptools==72.1.0 ; python_version >= "3.9" and python_version < "4" -shapely==2.0.5 ; python_version >= "3.9" and python_version < "4" +setuptools==73.0.1 ; python_version >= "3.9" and python_version < "4" +shapely==2.0.6 ; python_version >= "3.9" and python_version < "4" six==1.16.0 ; python_version >= "3.9" and python_version < "4" sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" -soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +soupsieve==2.6 ; python_version >= "3.9" and python_version < "4" threadpoolctl==3.5.0 ; 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coasts.buffer(0).is_valid.all() and (coasts.buffer(0).boundary.geom_type == "LineString").all(): self.coasts = gp.GeoDataFrame(geometry=coasts.buffer(0)) @@ -96,7 +97,7 @@ def __init__(self, **kwargs): else: try: - self.geometry = gp.read_file(geometry) + self.geometry = to_geodataframe(geometry) except: logger.warning("geometry is not a file, trying with geopandas Dataset") if isinstance(geometry, gp.GeoDataFrame): @@ -107,7 +108,7 @@ def __init__(self, **kwargs): else: try: - self.geometry = gp.read_file(geometry) + self.geometry = to_geodataframe(geometry) except: logger.warning("geometry is not a file, trying with geopandas Dataset") if isinstance(geometry, gp.GeoDataFrame): diff --git a/pyposeidon/tools.py b/pyposeidon/tools.py index ec91e77..095ed61 100644 --- a/pyposeidon/tools.py +++ b/pyposeidon/tools.py @@ -583,3 +583,14 @@ def get_netcdf_encoding( ) update_or_add(encoding, var, params) return encoding + + +def to_geodataframe( + path: str | os.PathLike[str], + **kwargs: T.Any, +) -> gpd.GeoDataFrame: + if str(path).endswith("parquet") or str(path).endswith("pq"): + gdf = gpd.read_parquet(path=path, **kwargs) + else: + gdf = gpd.read_file(filename=path, **kwargs) + return gdf diff --git a/pyproject.toml b/pyproject.toml index 83d26ea..97201d1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -47,9 +47,10 @@ joblib = "*" llvmlite = "*" netCDF4 = "*" numcodecs = "*" -numpy = ">=1.20, <2.0" +numpy = "*" pandas = "*" psutil = "*" +pyarrow = "*" pydap = ">=3.4.0" pymap3d = "*" pyogrio = "*" @@ -62,7 +63,6 @@ scipy = "*" searvey = "*" setuptools = "*" Shapely = ">=2" -#Shapely = { url = "https://github.com/shapely/shapely/archive/refs/tags/1.7.1.zip" } tqdm = "*" xarray = "*" zarr = "*" diff --git a/tests/test_boundary.py b/tests/test_boundary.py index 7d19d75..c0c7795 100644 --- a/tests/test_boundary.py +++ b/tests/test_boundary.py @@ -1,14 +1,15 @@ -import pyposeidon.boundary as pb -import pytest import geopandas as gp +import pytest +import pyposeidon.boundary as pb from . import DATA_DIR +from pyposeidon.tools import to_geodataframe noaa = DATA_DIR / "bl.zip" COAST_FILE = (DATA_DIR / "ocean.parquet").as_posix() -land = gp.read_file(COAST_FILE) +land = to_geodataframe(COAST_FILE) coast = gp.GeoDataFrame(geometry=land.boundary) INPUTS = pytest.mark.parametrize("input", [land, coast]) diff --git a/tests/test_dem_fix.py b/tests/test_dem_fix.py index 30bdbb5..8b4bbc0 100644 --- a/tests/test_dem_fix.py +++ b/tests/test_dem_fix.py @@ -1,10 +1,9 @@ -import pyposeidon.dem as pdem -import pyposeidon.mesh as pmesh import pytest -import numpy as np -import geopandas as gp +import pyposeidon.dem as pdem +import pyposeidon.mesh as pmesh from . import DATA_DIR +from pyposeidon.tools import to_geodataframe COAST_FILE = (DATA_DIR / "ocean.parquet").as_posix() @@ -29,7 +28,7 @@ @pytest.fixture(scope="session") def coasts(): - coast = gp.read_file(COAST_FILE) + coast = to_geodataframe(COAST_FILE) return coast