diff --git a/easybuild/easyconfigs/s/Seurat/Seurat-4.4.0-foss-2022b-R-4.2.2.eb b/easybuild/easyconfigs/s/Seurat/Seurat-4.4.0-foss-2022b-R-4.2.2.eb new file mode 100644 index 00000000000..2b65e56b170 --- /dev/null +++ b/easybuild/easyconfigs/s/Seurat/Seurat-4.4.0-foss-2022b-R-4.2.2.eb @@ -0,0 +1,76 @@ +easyblock = 'Bundle' + +name = 'Seurat' +version = '4.4.0' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://satijalab.org/seurat' +description = "Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data." + +toolchain = {'name': 'foss', 'version': '2022b'} + +dependencies = [ + ('R', '4.2.2'), + ('R-bundle-Bioconductor', '3.16', versionsuffix), +] + +exts_defaultclass = 'RPackage' +exts_default_options = { + 'sources': ['%(name)s_%(version)s.tar.gz'], + 'source_urls': [ + 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'https://cran.r-project.org/src/contrib/', # current version of packages + 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], +} + +exts_list = [ + ('Matrix', '1.6-1.1', { + 'checksums': ['331eb1f1fe9441d4224d8551072443596001b50e8c15618f59cb938b46ee8cc2'], + }), + ('sp', '1.5-1', { + 'checksums': ['69b9eab481d389bbb736d2adcf50c180aca248c3ffc4ebda8ffe2accc5f229df'], + }), + ('SeuratObject', '4.1.4', { + 'checksums': ['74e7649ad9795c962c0b12d039d7bf9b11a8a275a63c3a0fa1205b684e5310ef'], + }), + ('sctransform', '0.4.0', { + 'checksums': ['9aef10c196a9578e0d7a8e244c55cf28eb0685947d9df9e2d7790c2b99c6b4b3'], + }), + ('uwot', '0.1.14', { + 'checksums': ['8016e8192b7e72604ca71840cbe43fa1d2caed8a8ad7cbf20e85cd3b384a9fe0'], + }), + ('spatstat.utils', '3.0-1', { + 'checksums': ['cba1c7806564fd9145ca15edf77233d6ba5609f0989f7812221f5fc1ece0b91a'], + }), + ('spatstat.data', '3.0-0', { + 'checksums': ['cff9058a88489020a4a05b9576cd452f37fa9b42084873c474d06931f5187057'], + }), + ('spatstat.geom', '3.0-3', { + 'checksums': ['6e5b56c60e774a0cdcaa5a8ffde071225f233832446a341588bd8a7840913c84'], + }), + ('spatstat.random', '3.0-1', { + 'checksums': ['938c845c063b8781bf894c0a67537e7b2a7c425a4beba4a95ec9d2c37b43e5b6'], + }), + ('spatstat.sparse', '3.0-0', { + 'checksums': ['99be0a3c7592760fdf1668dc0811f75ed91c400390d1ecc3d5e643255f501ad2'], + }), + ('spatstat.explore', '3.0-5', { + 'checksums': ['9f438a12fac3f3e1d0bd550b1393c1e5732be694517b0878db09da557d6dc862'], + }), + ('scattermore', '1.2', { + 'checksums': ['5534a87b0bdd1375f0fbffc1a5c980ad64e33a108435a67469b8324b580602d1'], + }), + (name, version, { + 'checksums': ['0f17df9597642cfc1db4d8718f0b59ebab9fbed328b1f885f42ee85ea0dcb4dd'], + }), +] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +modextrapaths = {'R_LIBS_SITE': ''} + +moduleclass = 'bio'