From 69a74e57ddee2b20f59ff34aa45db58986339dd0 Mon Sep 17 00:00:00 2001 From: Sophie Ratkai Date: Fri, 12 May 2023 08:44:45 +0100 Subject: [PATCH] correct cnvrpt_workflow_out_dir --- cnvreports.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/cnvreports.py b/cnvreports.py index 384e9064..ad5ec3cb 100644 --- a/cnvreports.py +++ b/cnvreports.py @@ -173,7 +173,7 @@ def run_cnvreports( "panels": panels } # Upload manifest file - cmd = "dx upload {} --path {}".format(sample_ID_TestCode, rpt_workflow_out_dir) + cmd = "dx upload {} --path {}".format(sample_ID_TestCode, cnvrpt_workflow_out_dir) subprocess.check_output(cmd, shell=True) elif sample_X_CI is not None: @@ -235,7 +235,7 @@ def run_cnvreports( "panels": panels } # Upload manifest file - cmd = "dx upload {} --path {}".format(sample_X_CI, rpt_workflow_out_dir) + cmd = "dx upload {} --path {}".format(sample_X_CI, cnvrpt_workflow_out_dir) subprocess.check_output(cmd, shell=True) else: