diff --git a/3_available_matcher_components/generated_markdown/1_complete_list_of_matchers.md b/3_available_matcher_components/generated_markdown/1_complete_list_of_matchers.md new file mode 100644 index 0000000000..23d8fa05dc --- /dev/null +++ b/3_available_matcher_components/generated_markdown/1_complete_list_of_matchers.md @@ -0,0 +1,531 @@ +--- +layout: default +title: Complete List of Matchers +parent: Available Matchers +nav_order: 1 +permalink: /matcher-components/full-matcher-list +--- +# Complete List of Matchers +## IMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/IMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/IMatcher.java) + +Generic matcher interface which just implements one method called match. + It gets a source and a target ontology / knowledge graph, an input alignment and additional parameters. + +*Keywords: I Matcher* + +## MatcherURL [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherURL.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherURL.java) + +RawMatcher which implements the minimal interface for being executed under + the SEALS platform. The only method which should be implemented is the + align(URL, URL, URL) method. + +*Keywords: MatcherURL* + +## MatcherString [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherString.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherString.java) + + + +*Keywords: Matcher String* + +## IMatcherCaller [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/IMatcherCaller.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/IMatcherCaller.java) + +A matcher interface which allows the matcher to call other matchers as well. + +*Keywords: I Matcher Caller* + +## MatcherFile [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherFile.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherFile.java) + +For this matcher the results file that shall be written can be specified. + +*Keywords: Matcher File* + +## MatcherPipelineSequential [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherPipelineSequential.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherPipelineSequential.java) + +Executes all matchers one after the other. + +*Keywords: Matcher Pipeline Sequential* + +## MatcherCombination [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherCombination.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/MatcherCombination.java) + +Combines multiple matchers. + This can be very inefficient because the alignment has to be serialized after each matcher. + Better use a more specialized MatcherCombination like: TODO + +*Keywords: Matcher Combination* + +## SealsWrapper [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/receiver/SealsWrapper.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/receiver/SealsWrapper.java) + +This class implements the SEALS interface (via MatcherURL) and calls the provided matcher class + (the matcher class is provided via a file in the SEALS package in folder /conf/extenal/main_class.txt ). + If this class is renamed or moved, then the name needs to be adjusted in matching assembly project + in file SealsDescriptorHandler.java (method finalizeArchiveCreation - line 45). + +*Keywords: Seals Wrapper* + +## MatcherDockerFile [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/MatcherDockerFile.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/MatcherDockerFile.java) + +This matcher creates a docker container based on a given docker image name. + Within this container a matcher server should be started. + Therefore it will use the MatcherHTTPCall internally to run the matcher. + For this Matcher to work you have to add the following dependency to YOUR pom: + +``` + + + com.github.docker-java + docker-java-core + 3.2.7 + + + com.github.docker-java + docker-java-transport-httpclient5 + 3.2.7 + + +``` + +With this in place everything should work. + +*Keywords: Matcher Docker File* + +## MatcherSeals [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/seals/MatcherSeals.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/external/seals/MatcherSeals.java) + +This matcher wraps the SEALS client such that a SEALS zip file or folder can be executed. + If multiple matcher should be instantiated, have a look at MatcherSealsBuilder buildFromFolder. + +*Keywords: Matcher Seals* + +## MatcherCLI [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/cli/MatcherCLI.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/external/cli/MatcherCLI.java) + +Matcher for running external matchers (require the subclass to create a command to execute). + +*Keywords: MatcherCLI* + +## MatcherCLIFromFile [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/cli/MatcherCLIFromFile.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/external/cli/MatcherCLIFromFile.java) + +Read the file "external/external_command.txt" and start an external process. The whole content of the file is used and newlines are ignored. + For replacements in this string have a look at MatcherCLI#getCommand() + +*Keywords: MatcherCLI From File* + +## MatcherHTTPCall [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/http/MatcherHTTPCall.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/external/http/MatcherHTTPCall.java) + +This class wraps a matcher service. + +*Keywords: MatcherHTTP Call* + +## ReferenceMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/util/ReferenceMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-eval/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_eval/util/ReferenceMatcher.java) + +A matcher which tries to detect the testcase and return the reference alignment. + This matcher is only for testing purposes. + +*Keywords: Reference Matcher* + +## AddPositivesWithReference [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/matchers/AddPositivesWithReference.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-eval/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_eval/matchers/AddPositivesWithReference.java) + +This matcher will detect the test case given in the input and + use the reference (gold standard) to sample from it with the given rate which is added to the input alignment. + This matcher is contained in the eval package because it uses the information from the reference. + This matcher should not be included in real matching systems. + +*Keywords: Add Positives With Reference* + +## MatcherYAAA [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherYAAA.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherYAAA.java) + +A matcher template for matchers that are based on the YAAA Framework. + +*Keywords: MatcherYAAA* + +## MatcherPipelineYAAA [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherPipelineYAAA.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherPipelineYAAA.java) + +A matcher template for matchers that are based on YAAA. + +*Keywords: Matcher PipelineYAAA* + +## MatcherPipelineYAAAJena [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherPipelineYAAAJena.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherPipelineYAAAJena.java) + +Better use MatcherYAAAPipeline because it can combine matchers which use different APIS like Jena and OWLAPI etc + +*Keywords: Matcher PipelineYAAA Jena* + +## MatcherPipelineYAAAJenaConstructor [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherPipelineYAAAJenaConstructor.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherPipelineYAAAJenaConstructor.java) + +Better use MatcherPipelineYAAA because it can combine matchers which use different APIS like Jena and + OWLAPI etc. + +*Keywords: Matcher PipelineYAAA Jena Constructor* + +## MatcherYAAAJena [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherYAAAJena.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena/MatcherYAAAJena.java) + +A matcher template for matchers that are based on Apache Jena. + +*Keywords: MatcherYAAA Jena* + +## AddNegativesRandomly [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesRandomly.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesRandomly.java) + +Abstract class which is the base class for all AddNegatives which are based on random sampling. + +*Keywords: Add Negatives Randomly* + +## AddNegativesRandomlyOneOneAssumption [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesRandomlyOneOneAssumption.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesRandomlyOneOneAssumption.java) + +This component adds negative samples to the alignment. + For each positive correspondences a configurable number of negative correspondences are added. + +*Keywords: Add Negatives Randomly One One Assumption* + +## AddNegativesRandomlyAbsolute [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesRandomlyAbsolute.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesRandomlyAbsolute.java) + +This component adds negative samples to the alignment. + The number of negative samples is defined by an absolute number. + +*Keywords: Add Negatives Randomly Absolute* + +## AddNegativesViaAlignment [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesViaAlignment.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesViaAlignment.java) + +This component adds negative correspondences to the input alignment via an alignment (generated by a recall optimized matcher). + This matcher is only suitable if the whole matching system is executed only for one test case. + Why? Because the alignment (which is test case specific) need to be passed in the constructor. + Thus it will only give useful results if only used for the correct test case. + + The input alignment should contain positive correspondences. + The negatives are generated by looking at the provided alignment in the constructor. + All correspondences which are contained in the input alignment (ground truth) and in the given alignment + (which has a high recall - meaning many correspondences) are assumned to be positives and all + others correspondences which maps a concept of the positive correspondence to another concept are assumed to be negatives. + + The returned alignment consists of positives (= relation) and negatives (% incompat relation) which can be used to + train supervised matchers. + +*Keywords: Add Negatives Via Alignment* + +## AddNegativesViaMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesViaMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesViaMatcher.java) + +This component adds negative correspondences to the input alignment via a recall optimized matcher. + This also means that the input alignment should contain positive correspondences. + After applying the recallMatcher given in the constructor, a new alignment is returned which + contains positive (equivalence relation) and negative(incompat relation) correspondences. + With the help of this alignment, supervised matchers can be trained. + +*Keywords: Add Negatives Via Matcher* + +## AddNegativesRandomlyShare [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesRandomlyShare.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/addnegatives/AddNegativesRandomlyShare.java) + +This component adds negative samples to the alignment. + Negatives are added as long as the share of negatives is not fullfilled. + +*Keywords: Add Negatives Randomly Share* + +## UriInterfaceWrapper [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/wrapper/UriInterfaceWrapper.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/wrapper/UriInterfaceWrapper.java) + +This matcher implements the URL interface and wrapps a MatcherYAAA. + This is useful for ParisMatcher if the input is already a NT file. + +*Keywords: Uri Interface Wrapper* + +## ParisMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/wrapper/ParisMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/wrapper/ParisMatcher.java) + +This is a wrapper for PARIS matching system by Fabian Suchanek et al. + The corresponding paper is called PARIS: Probabilistic Alignment of Relations, Instances, and Schema. + It will download the matcher if not already done and execute it as an external process. The equivalence files of the last iteration + are then read into a YAAA aligment. It is tested to run with java 1.7 and 1.8. + +*Keywords: Paris Matcher* + +## MatchPropBasedOnInstances [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/instancelevel/MatchPropBasedOnInstances.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/instancelevel/MatchPropBasedOnInstances.java) + +Matches properties based on same subject and object and the distribution. + +*Keywords: Match Prop Based On Instances* + +## MatchClassBasedOnInstances [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/instancelevel/MatchClassBasedOnInstances.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/instancelevel/MatchClassBasedOnInstances.java) + +A matcher which matches classes based on already instance matches. + +*Keywords: Match Class Based On Instances* + +## MatchPropBasedOnClass [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/structurelevel/MatchPropBasedOnClass.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/structurelevel/MatchPropBasedOnClass.java) + +Graph-based Matcher: Checks all matched classes and matches also properties + between them (domain and range) with mean value of both classes. + Example: + + foo ---already matched with c=0.5--- foo + | | + blub --new with c=(0.5+0.4)/2=0.45-- bla + | | + v v + bar ----already matched with c=0.4--- bar + + + In the example blub and bla are properties. + +*Keywords: Match Prop Based On Class* + +## BoundedPathMatching [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/structurelevel/BoundedPathMatching.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/structurelevel/BoundedPathMatching.java) + +Structure based matcher which allows to find matches in hierarchies which are between two already matched entities. + Example: + + SourceSuperClass ---already matched with c=0.8--- TargetSuperClass + ^ ^ + | | + rdfs:subClassOf rdfs:subClassOf + | | + SourceIntermediateClass --new with c=(0.8+0.9)/2=0.85-- TargetIntermediateClass + ^ ^ + | | + rdfs:subClassOf rdfs:subClassOf + | | + SourceSubclass ----already matched with c=0.9--- TargetSubclass + + + Per default it only matches the class hierarchy but it can be customized for further + hierarchies like properties via the configurations object within this class. + +*Keywords: Bounded Path Matching* + +## MachineLearningWEKAFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/MachineLearningWEKAFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/MachineLearningWEKAFilter.java) + +Non functional code. + +*Keywords: Machine LearningWEKA Filter* + +## AlignmentSaveMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AlignmentSaveMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AlignmentSaveMatcher.java) + +Just saves the ontologies in a specific format. + +*Keywords: Alignment Save Matcher* + +## NoOpMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/NoOpMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/NoOpMatcher.java) + +Matcher which does nothing but returning a valid empty alignment. + +*Keywords: No Op Matcher* + +## AddAlignmentExtensions [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentExtensions.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentExtensions.java) + +Adds the provided extensions to the alignment when the matcher is executed. + +*Keywords: Add Alignment Extensions* + +## AdditionalConfidenceByFunction [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AdditionalConfidenceByFunction.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AdditionalConfidenceByFunction.java) + +Adds an additional confidence by a user chosen function which gets a ontResource and has to return a double. + The value will be computed for source and target. + If you want to add confidences for a correspondence then implement your own matcher and iterate over the alignment. + +*Keywords: Additional Confidence By Function* + +## ForwardAlwaysMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ForwardAlwaysMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ForwardAlwaysMatcher.java) + +This is a simple matcher that forwards a given alignment always (even if the input alignment is available). + In case the input alignment should be used when availabel, use ForwardMatcher . + +*Keywords: Forward Always Matcher* + +## AddAlignmentMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentMatcher.java) + +This is a simple matcher that adds a given alignment to the inputAlignment. + The given alignemnt has advantage. + +*Keywords: Add Alignment Matcher* + +## ForwardMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ForwardMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ForwardMatcher.java) + +This is a simple matcher that forwards a given alignment if the input alignment is not available. + In case you want to always use the given alignemnt even if the input alignment is available, then use + ForwardAlwaysMatcher. + +*Keywords: Forward Matcher* + +## TrainingAlignmentGenerator [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/TrainingAlignmentGenerator.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/TrainingAlignmentGenerator.java) + +This matcher assumes that the input alignment is a kind of reference alignment. + After applying the recallMatcher given in the constructor, a new alignment is returned which + contains positive (equivalence relation) and negative(incompat relation) correspondences. + With the help of this alignment, supervised matchers can be trained. + +*Keywords: Training Alignment Generator* + +## FileSaveMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/FileSaveMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/FileSaveMatcher.java) + +Just saves the ontologies in a specific format. + +*Keywords: File Save Matcher* + +## BackgroundMatcherStandAlone [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/external/matcher/BackgroundMatcherStandAlone.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/external/matcher/BackgroundMatcherStandAlone.java) + +Matcher which applies String matching and matches then with the provided background knowledge source and strategy. + +*Keywords: Background Matcher Stand Alone* + +## BackgroundMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/external/matcher/BackgroundMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/external/matcher/BackgroundMatcher.java) + +Template matcher where the background knowledge and the exploitation strategy (represented as ImplementedBackgroundMatchingStrategies) can be plugged-in. + This matcher can be used as matching component. It is sensible to use a simple string matcher before running this + matcher to increase the performance by filtering out simple matches. If you want a pre-packaged stand-alone + background-based matching system, you can try out BackgroundMatcherStandAlone. +
+ This matcher relies on a similarity metric that is implemented within the background source and used in + BackgroundMatcher#compare(String, String). + +*Keywords: Background Matcher* + +## SimpleStringMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/external/matcher/SimpleStringMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/external/matcher/SimpleStringMatcher.java) + +A relatively simple matcher that can be used before running BackgroundMatcher to filter out simple matches. + +*Keywords: Simple String Matcher* + +## StopwordExtraction [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/StopwordExtraction.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/StopwordExtraction.java) + +Extracts corpus dependent stopwords from instances, classes and properties. + +*Keywords: Stopword Extraction* + +## BaselineStringMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/BaselineStringMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/BaselineStringMatcher.java) + +A very basic string matcher that can be used as baseline for matchers. + +*Keywords: Baseline String Matcher* + +## StringMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/StringMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/StringMatcher.java) + + + +*Keywords: String Matcher* + +## SynonymTextMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/SynonymTextMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/SynonymTextMatcher.java) + +Matches resource A (source) to B (target) iff they have at least one label in the same synset. + The text used for the resources can be defined (e.g. rdfs:label etc). + The processing can also be adjusted by subclassing this class and override method processString. + +*Keywords: Synonym Text Matcher* + +## HighPrecisionMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/HighPrecisionMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/HighPrecisionMatcher.java) + +A high precision matcher which focuses on URI fragment and label (only element based string comparison). + It achives the following scores: + + | Track | PREC | REC | F1 | + |--------------------|--------|--------|--------| + | anatomy | 0.9905 | 0.6174 | 0.7607 | + | conference (micro) | 0.8046 | 0.4590 | 0.5845 | + | largebio | 0.9911 | 0.4233 | 0.5932 | + + +*Keywords: High Precision Matcher* + +## ExactStringMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/ExactStringMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/ExactStringMatcher.java) + +Matcher which creates correspondences based on exact string match. + +*Keywords: Exact String Matcher* + +## ScalableStringProcessingMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/scale/ScalableStringProcessingMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/elementlevel/scale/ScalableStringProcessingMatcher.java) + +Matcher which uses different String Matching approaches (stored in PropertySpecificStringProcessing) with a specific confidence. + Multiple normalization are possible as shown below. + The highest confidence is taken at the end. + +``` + Function equality = (text) -> text; + Function lowercase = (text) -> text.toLowerCase(); + ScalableStringProcessingMatcher matcherOne = new ScalableStringProcessingMatcher(Arrays.asList( + new PropertySpecificStringProcessing(equality, 1.0, RDFS.label), + new PropertySpecificStringProcessing(lowercase, 0.9, RDFS.label) + new PropertySpecificStringProcessing(equality, 0.7, SKOS.altLabel), + new PropertySpecificStringProcessing(lowercase, 0.6, SKOS.altLabel) + )); +``` + + +*Keywords: Scalable String Processing Matcher* + +## Doc2vecModelMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/Doc2vecModelMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/Doc2vecModelMatcher.java) + +Updates the confidence of already matched resources. + It writes a textual representation of each resource to a csv file (text generation can be modified by subclassing and overriding getResourceText method). + +*Keywords: Doc2vec Model Matcher* + +## DocumentSimilarityBase [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/DocumentSimilarityBase.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/DocumentSimilarityBase.java) + +A base class for all matchers which write a csv file where every line + represents a resource with with cell as identifier like URI and + second cell the corresponding tokens (whitespace separated). + +*Keywords: Document Similarity Base* + +## VectorSpaceModelMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/VectorSpaceModelMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/VectorSpaceModelMatcher.java) + +Updates the confidence of already matched resources. + It writes a textual representation of each resource to a csv file (text generation can be modified by subclassing and overriding getResourceText method). + +*Keywords: Vector Space Model Matcher* + +## SentenceTransformersMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersMatcher.java) + +This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it. + Thus this matcher does not filter anything but generates matching candidates based on the text. + +*Keywords: Sentence Transformers Matcher* + +## SentenceTransformersFineTuner [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersFineTuner.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersFineTuner.java) + +This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it. + Thus this matcher does not filter anything but generates matching candidates based on the text. + +*Keywords: Sentence Transformers Fine Tuner* + +## TransformersBaseFineTuner [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBaseFineTuner.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBaseFineTuner.java) + +This is a base class for all Transformers fine tuners. + It just contains some variables and getter and setters. + +*Keywords: Transformers Base Fine Tuner* + +## TransformersBase [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBase.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBase.java) + +This is a base class for all Transformers. + It just contains some variables and getter and setters. + +*Keywords: Transformers Base* + +## OpenEAMatcher [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/openea/OpenEAMatcher.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/openea/OpenEAMatcher.java) + +This matching module uses the OpenEA library to match entities. + It uses all correspondences which are provided through either the constructor or match method(inputalignment) + with equivalence relation to train the approach. It only need positive correspondences and samples negative correspondences on its own. +
+ If you apply your own configuration you can use the parameters from openEA and also + the following additional parameters: + + +*Keywords: OpenEA Matcher* + +## MatcherYAAA [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_owlapi/MatcherYAAA.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-owlapi/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_owlapi/MatcherYAAA.java) + +A matcher template for matchers that are based on the YAAA Framework. + +*Keywords: MatcherYAAA* + +## MatcherPipelineYAAAOwlApi [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_owlapi/MatcherPipelineYAAAOwlApi.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-owlapi/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_owlapi/MatcherPipelineYAAAOwlApi.java) + +Better use MatcherYAAAPipeline because it can combine matchers which use different APIs like Jena and OWLAPI etc. + +*Keywords: Matcher PipelineYAAA Owl Api* + +## MatcherYAAAOwlApi [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_owlapi/MatcherYAAAOwlApi.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-owlapi/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_owlapi/MatcherYAAAOwlApi.java) + + + +*Keywords: MatcherYAAA Owl Api* + +--- +automatically generated on 2023-09-18 12:53 diff --git a/3_available_matcher_components/generated_markdown/2_complete_list_of_matchers_multi_source.md b/3_available_matcher_components/generated_markdown/2_complete_list_of_matchers_multi_source.md new file mode 100644 index 0000000000..f9bc4ac8a1 --- /dev/null +++ b/3_available_matcher_components/generated_markdown/2_complete_list_of_matchers_multi_source.md @@ -0,0 +1,126 @@ +--- +layout: default +title: Complete List of Multi Source Matchers +parent: Available Matchers +nav_order: 2 +permalink: /matcher-components/full-matcher-multi-source-list +--- +# Complete List of Multi Source Matchers +## MatcherMultiSourceURL [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/multisource/MatcherMultiSourceURL.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/multisource/MatcherMultiSourceURL.java) + +Multi source matcher which expects URLs as parameters. Better do not use this class but implement the interface IMatcherMultiSource. + Subclasses of this class also try to implement this interface. + +*Keywords: Matcher Multi SourceURL* + +## IMatcherMultiSource [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/multisource/IMatcherMultiSource.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/multisource/IMatcherMultiSource.java) + +Generic matcher interface for matching multiple ontologies / knowledge graphs. + It gets multiple ontologies / knowledge graphs, an input alignment and additional parameters. + +*Keywords: I Matcher Multi Source* + +## MultiSourcePipelineSequential [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/multisource/MultiSourcePipelineSequential.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/multisource/MultiSourcePipelineSequential.java) + +Executes all multi source matchers one after the other. + +*Keywords: Multi Source Pipeline Sequential* + +## IMatcherMultiSourceCaller [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/multisource/IMatcherMultiSourceCaller.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/multisource/IMatcherMultiSourceCaller.java) + +Generic matcher interface for matching multiple ontologies / knowledge graphs which calls other matchers itself. + It gets multiple ontologies / knowledge graphs, an input alignment and additional parameters. + +*Keywords: I Matcher Multi Source Caller* + +## MatcherMultiSourceYAAAJena [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/multisource/MatcherMultiSourceYAAAJena.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena/multisource/MatcherMultiSourceYAAAJena.java) + + + +*Keywords: Matcher Multi SourceYAAA Jena* + +## FilterByErrorDegree [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/clustering/FilterByErrorDegree.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/clustering/FilterByErrorDegree.java) + +This filter of correspondences is based on the community structure of the correspondences. + E.g. if many entities are fully connected, then this indicates that all of those correspondences are correct. + But if tehre are some weakly connected entites, then this might indicate wrong correspondences. + +*Keywords: Filter By Error Degree* + +## FamerClustering [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/clustering/FamerClustering.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/clustering/FamerClustering.java) + +A filter for multi source matching. + It filters the input alignment by analyzing the structure of the correspondences. + E.g. if many entities are fully connected, then this indicates that all of those correspondences are correct. + More information on all possible algorithmn which should be chosen in the constructor can be found at Scalable Matching and Clustering of Entities with FAMER . + The source code can be found at gitlab. + +*Keywords: Famer Clustering* + +## MultiSourceDispatcherIncrementalMergeByOrder [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherIncrementalMergeByOrder.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherIncrementalMergeByOrder.java) + +Matches multiple ontologies / knowledge graphs with an incremental merge approach. + This means that two ontologies are merged together and then possibly the union is merged with another ontology and so on. + The order how they are merged is defined by subclasses. + +*Keywords: Multi Source Dispatcher Incremental Merge By Order* + +## MultiSourceDispatcherTransitivePairsTextBased [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherTransitivePairsTextBased.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherTransitivePairsTextBased.java) + +This dispatcher will compare the texts in a model and match the ones which are textually the clostest such that a connection between all ontologies exists. + Therefore exactly (number of models)-1 matching operations and no merges are executed. + +*Keywords: Multi Source Dispatcher Transitive Pairs Text Based* + +## MultiSourceDispatcherIncrementalMerge [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherIncrementalMerge.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherIncrementalMerge.java) + +Matches multiple ontologies / knowledge graphs with an incremental merge approach. + This means that two ontologies are merged together and then possibly the union is merged with another ontology and so on. + The order how they are merged is defined by subclasses. + +*Keywords: Multi Source Dispatcher Incremental Merge* + +## MultiSourceDispatcherTransitivePairsOrderBased [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherTransitivePairsOrderBased.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherTransitivePairsOrderBased.java) + +This dispatcher will match multiple ontologies by selecting a few pairs. + First the ontologies will be sorted by a given comparator. + As an example A, B, C, D. + Afterwards two possible matching strategies are possible: + + Some comparators can be found at MultiSourceDispatcherIncrementalMergeByOrder as static attributes. + +*Keywords: Multi Source Dispatcher Transitive Pairs Order Based* + +## MultiSourceDispatcherIncrementalMergeByCluster [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherIncrementalMergeByCluster.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherIncrementalMergeByCluster.java) + +Matches multiple ontologies / knowledge graphs with an incremental merge approach. + This means that two ontologies are merged together and then possibly the union is merged with another ontology and so on. + The order how they are merged is defined by subclasses. + +*Keywords: Multi Source Dispatcher Incremental Merge By Cluster* + +## MultiSourceDispatcherIncrementalMergeByClusterText [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherIncrementalMergeByClusterText.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherIncrementalMergeByClusterText.java) + +Matches multiple ontologies / knowledge graphs with an incremental merge approach. + This means that two ontologies are merged together and then possibly the union is merged with another ontology and so on. + The order how they are merged is defined by subclasses. + +*Keywords: Multi Source Dispatcher Incremental Merge By Cluster Text* + +## MultiSourceDispatcherUnionToUnion [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherUnionToUnion.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherUnionToUnion.java) + + + +*Keywords: Multi Source Dispatcher Union To Union* + +## MultiSourceDispatcherAllPairs [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherAllPairs.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/multisource/dispatchers/MultiSourceDispatcherAllPairs.java) + + + +*Keywords: Multi Source Dispatcher All Pairs* + +--- +automatically generated on 2023-09-18 12:53 diff --git a/3_available_matcher_components/generated_markdown/3_complete_list_of_filters.md b/3_available_matcher_components/generated_markdown/3_complete_list_of_filters.md new file mode 100644 index 0000000000..0d0780f472 --- /dev/null +++ b/3_available_matcher_components/generated_markdown/3_complete_list_of_filters.md @@ -0,0 +1,327 @@ +--- +layout: default +title: Complete List of Filters +parent: Available Matchers +nav_order: 3 +permalink: /matcher-components/full-filter-list +--- +# Complete List of Filters +## Filter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/Filter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-base/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_base/Filter.java) + +Interface for filters. A filter is a matcher that does not add new correspondences to the alignment but instead + further processes the given alignment by (1) removing correspondences and/or (2) adding new feature weights to + existing correspondences. + +*Keywords: Filter* + +## ScaleConfidence [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ScaleConfidence.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ScaleConfidence.java) + +Scales the correspondence confidence values linearly to an given interval (by default [0,1]). + +*Keywords: Scale Confidence* + +## ConfidenceCombiner [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ConfidenceCombiner.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ConfidenceCombiner.java) + +Combines the additional confidences and set the overall correspondence confidence to be the mean of the selected + confidences. + +*Keywords: Confidence Combiner* + +## ScaleAdditionalConfidence [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ScaleAdditionalConfidence.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/ScaleAdditionalConfidence.java) + +Scales the additional correspondence confidence values (that were produced by other filters/matchers) linearly to a + given interval (by default [0,1]). Each additional confidence is scaled separately and only the specified + additional confidences are scaled. If all of them should be scaled, then leave the set of keys empty. + +*Keywords: Scale Additional Confidence* + +## CardinalityFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/CardinalityFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/CardinalityFilter.java) + +This filter returns only the alignments with the highest confidence if there are n-to-m matched elements. + This might not be the best solution. + +*Keywords: Cardinality Filter* + +## BaseFilterWithSetComparison [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/BaseFilterWithSetComparison.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/BaseFilterWithSetComparison.java) + +Basic filter for instances which compares sets like neighbours or properties. + +*Keywords: Base Filter With Set Comparison* + +## BadHostsFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/BadHostsFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/BadHostsFilter.java) + +This filter removes correspondences where the source or target has not the same host of the OntModels. + E.g. it removes rdf:type=rdf:type or foaf:knows=foaf:knows + +*Keywords: Bad Hosts Filter* + +## AnonymousNodeFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/AnonymousNodeFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/AnonymousNodeFilter.java) + +This filter removes correspondences where the source or target is a blank node. + +*Keywords: Anonymous Node Filter* + +## TypeFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/TypeFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/TypeFilter.java) + +Filters only class, instance or property matches. + +*Keywords: Type Filter* + +## MixedTypFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/MixedTypFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/MixedTypFilter.java) + +Asserts a homogenous alignment (i.e. only the same type is matched). + For instance, correspondences between instances and classes will be deleted. + + Not Allowed (examples): + - class, instance + - datatype property, object property + - rdf property, datatype property + + Allowed are only exact matches. + +*Keywords: Mixed Typ Filter* + +## ReflexiveCorrespondenceFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/ReflexiveCorrespondenceFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/ReflexiveCorrespondenceFilter.java) + +Removes all reflexive edges (which maps A to A) from an alignment. + +*Keywords: Reflexive Correspondence Filter* + +## NtoMCorrespondenceFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/NtoMCorrespondenceFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/NtoMCorrespondenceFilter.java) + +A filter which removes correspondences where source or target is matched to more than one entity. + All such correspondences will be removed. + As an example: if alignment looks like + + then the last three are removed because C and D are matched multiple times. + +*Keywords: NtoM Correspondence Filter* + +## ConfidenceCurvatureFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/ConfidenceCurvatureFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/ConfidenceCurvatureFilter.java) + +Filters the alignment by computing the inflection point of the sorted + confidences. To make it more stable a smoothing (spline interpolation) can be + used. Furthermore also the elbow point of the confidences can be used to + filter them. + +*Keywords: Confidence Curvature Filter* + +## TopXFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/TopXFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/TopXFilter.java) + +This filter keeps only the top X correspondences according to confidence. + The filter can be configured to be source-based (keep only the top X correspondences for each source node). + The filter can be configured to be target-based (keep only the top X correspondences for each target node). + The filter can be configured to be size-based (based on the smaller or larger side of the alignment). + +*Keywords: TopX Filter* + +## ConfidenceFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/ConfidenceFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/ConfidenceFilter.java) + +This filter returns only alignments with confidence greater or equals than a + specific threshold. Default is 0.9. + + Thresholds can be set per type. + +*Keywords: Confidence Filter* + +## AdditionalConfidenceFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/AdditionalConfidenceFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/AdditionalConfidenceFilter.java) + +It filters based on the additional confidence. The key and threshold should be provided. + +*Keywords: Additional Confidence Filter* + +## CommonPropertiesFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/CommonPropertiesFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/CommonPropertiesFilter.java) + +Filter which deletes instance mappings if they have no matched properties in common. + +*Keywords: Common Properties Filter* + +## SimilarNeighboursFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/SimilarNeighboursFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/SimilarNeighboursFilter.java) + +Checks for each instance mapping, how many already matched neighbours it has. + + Source_Subject ------Source_Property------Source_Object + | | + subjectCorrespondence objectCorrespondence + | | + Target_Subject ------Target_Property------Target_Object + + +*Keywords: Similar Neighbours Filter* + +## SimilarTypeFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/SimilarTypeFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/SimilarTypeFilter.java) + +Checks for each instance mapping, how many already matched types it has in common. + For comparing a type hierarchy, choose SimilarHierarchyFilter. + +*Keywords: Similar Type Filter* + +## BagOfWordsSetSimilarityFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/BagOfWordsSetSimilarityFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/BagOfWordsSetSimilarityFilter.java) + +Filters individual/instance mappings by comparing literals. + The literals are selected by the corresponding properties (leave empty to select all). + The set of tokens created for each individual are compared with the SetSimilarity. + +*Keywords: Bag Of Words Set Similarity Filter* + +## SimilarHierarchyFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/SimilarHierarchyFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/instance/SimilarHierarchyFilter.java) + +Check if already matched individuals have a similar hierarchy (class hierarchy). + For different computation methods see SimilarHierarchyFilterApproach. + +*Keywords: Similar Hierarchy Filter* + +## MaxWeightBipartiteExtractor [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/extraction/MaxWeightBipartiteExtractor.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/extraction/MaxWeightBipartiteExtractor.java) + +Faster implementation than HungarianExtractor for generating a one-to-one alignment. + The implementation is based on http://www.mpi-inf.mpg.de/~mehlhorn/Optimization/bipartite_weighted.ps (page 13-19). + +*Keywords: Max Weight Bipartite Extractor* + +## NaiveAscendingExtractor [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/extraction/NaiveAscendingExtractor.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/extraction/NaiveAscendingExtractor.java) + +Naive ascending extraction as shown in "Analyzing Mapping Extraction Approaches" (C. Meilicke, H. Stuckenschmidt). + It iterates over the sorted (ascending) correspondences and and uses the correspondence with the highest confidence. + Afterwards removes every other correspondence with the same source or target. + +*Keywords: Naive Ascending Extractor* + +## NaiveDescendingExtractor [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/extraction/NaiveDescendingExtractor.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/extraction/NaiveDescendingExtractor.java) + +Naive descending extraction as shown in "Analyzing Mapping Extraction Approaches" (C. Meilicke, H. Stuckenschmidt). + It iterates over the sorted (descending) correspondences and and uses the correspondence with the highest confidence. + Afterwards removes every other correspondence with the same source or target. + Previously it was called CardinalityFilter aka GreedyExtractor. + +*Keywords: Naive Descending Extractor* + +## HungarianExtractor [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/extraction/HungarianExtractor.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-jena-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/extraction/HungarianExtractor.java) + +This implementation uses the Hungarian algorithm to find a one to one mapping. + The runtime highly depends on the lower number of concepts (source or target) of the alignment as well as the number of correspondences. + If a better runtime is needed, use MaxWeightBipartiteExtractor. + +*Keywords: Hungarian Extractor* + +## MachineLearningScikitFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/MachineLearningScikitFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/MachineLearningScikitFilter.java) + +This filter learns and applies a classifier given a training sample and an existing alignment. + +*Keywords: Machine Learning Scikit Filter* + +## TransformersFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFilter.java) + +This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment. + The texts of the two resources are fed into the specified transformer model and the prediction is added in form of a confidence to the correspondence. + No filtering is applied in this class. + +*Keywords: Transformers Filter* + +## TransformersFineTunerHpSearch [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFineTunerHpSearch.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFineTunerHpSearch.java) + + + +*Keywords: Transformers Fine Tuner Hp Search* + +## LLMBase [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBase.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBase.java) + +This filter asks a LLM which entity of the source fits best to an entity of the target. + Correspondences needs to be provided such that candidates are available. + It will only keep correspondences which are stated to be useful. + The difference to +``` +#LLMBinaryFilter +``` + is that all possible matches arte given to the LLM model. + +*Keywords: LLM Base* + +## TransformersFineTuner [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFineTuner.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFineTuner.java) + +This class is used to fine-tune a transformer model based on a generated dataset. + In every call to the match method, the training data will be generated and appended to a temporary file. + When you call the TransformersFineTuner#finetuneModel() method, then a model is fine-tuned and the + training file is deleted. + +*Keywords: Transformers Fine Tuner* + +## LLMChooseGivenEntityFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMChooseGivenEntityFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMChooseGivenEntityFilter.java) + +This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment). + Afterwards the same is done in the reversed direction. + +*Keywords: LLM Choose Given Entity Filter* + +## LLMBinaryFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBinaryFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBinaryFilter.java) + +This filter asks a LLM if a given correspondence is correct or not. + It has no information about the other correspondences and each correspondence becomes a prediction example for the LLM. + It will add the corresponding confidence to the correspondence such that a filtering afterwards is possible. + +*Keywords: LLM Binary Filter* + +## RelationTypeFineTuner [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypeFineTuner.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypeFineTuner.java) + +This matcher predicts the relation type given a transformer model. + This component do not create new correspondences but refine the relation of given class correspondences. + +*Keywords: Relation Type Fine Tuner* + +## RelationTypePredictor [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypePredictor.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-ml/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypePredictor.java) + +This matcher predicts the relation type given a transformer model. + This component do not create new correspondences but refine the relation of given class correspondences. + +*Keywords: Relation Type Predictor* + +## AlcomoFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_owlapi_matchers/AlcomoFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-owlapi-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_owlapi_matchers/AlcomoFilter.java) + +Filter which makes and alignment coherent. When using this component, please cite: + Christian Meilicke. Alignment Incoherence in Ontology Matching. University Mannheim 2011. + + This filter wraps the original implementation. + +*Keywords: Alcomo Filter* + +## LogMapRepairFilter [Javadoc](https://dwslab.github.io/melt/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_owlapi_matchers/logmap/LogMapRepairFilter.html) / [Source Code](https://github.com/dwslab/melt/blob/master/matching-owlapi-matchers/src/main/java/de/uni_mannheim/informatik/dws/melt/matching_owlapi_matchers/logmap/LogMapRepairFilter.java) + +This is the logmap repair filter. + More information can be found at the wiki + and in the github repository. + + In case you want to use this filter, make the dependency of matching-owlapi-matchers to exclude the following: + +``` + + + + com.github.ansell.pellet + pellet-modularity + + + +``` + + + and also include OWLAPI with version 4.1.3 + +``` + + + net.sourceforge.owlapi + owlapi-distribution + 4.1.3 + + +``` + + +*Keywords: Log Map Repair Filter* + +--- +automatically generated on 2023-09-18 12:53 diff --git a/javadoc_latest/allclasses-index.html b/javadoc_latest/allclasses-index.html index 9e6c8b54c5..d34e50db91 100644 --- a/javadoc_latest/allclasses-index.html +++ b/javadoc_latest/allclasses-index.html @@ -62,6 +62,14 @@

All Classes and Interfaces<
Description
 
+ +
+
Adds the provided extensions to the alignment when the matcher is executed.
+
+ +
+
This is a simple matcher that adds a given alignment to the inputAlignment.
+
Adds an additional confidence by a user chosen function which gets a ontResource and has to return a double.
@@ -168,454 +176,464 @@

All Classes and Interfaces<
Due to the fact that a matcher can only return one value, but alignment and parameters can be changed, an extra object is necessary.

- +
-
The AlignmentHandler manages the parsing of alignment files.
+
This refiner will create the closure of the system and reference alignment.
- +
+
The AlignmentHandler manages the parsing of alignment files.
+
+ +
The AlignmentParser can parse XML files following the convention described in the Alignment Format.
- -
+ +
Just saves the ontologies in a specific format.
- -
+ +
Analytical Store for alignments.
- -
+ +
The AlignmentSerializer writes an Alignment to a file.
- -
+ +
Class which helps to repair alignment files which are for example not correctly encoded.
- -
 
- -
+ +
 
+ +
This data structure can be used to store all kind of analytical information about one alignment.
- -
+ +
Data structure for some often used features.
- -
-
This filter removes correspondences where the source or target has not the same host of the OntModels.
-
- +
+
This filter removes correspondences where the source or target is a blank node.
+
+ +
An argument scope are multiple arguments but if an argument cannot be substituted, the whole argument scope will be empty.
- -
 
- -
+ +
 
+ +
Arrays2
- -
+ +
Class holding the authorization configuration.
- -
 
- -
+ +
 
+ +
A dictionary that will use BabelNet offline indices.
- -
+ +
Links concepts to BabelNet (using the BabelNet indices).
- -
+ +
Links concepts to BabelNet (using the RDF dataset - NOT the indices).
- -
+ +
Template matcher where the background knowledge and the exploitation strategy (represented as ImplementedBackgroundMatchingStrategies) can be plugged-in.
- -
+ +
Matcher which applies String matching and matches then with the provided background knowledge source and strategy.
- -
+ +
A tools class containing static functionality for string-based matching.
- -
+ +
This filter removes correspondences where the source or target has not the same host of the OntModels.
- -
+ +
Data structure keeps the notion of the original ordering but the equals method will ignore the ordering
- -
+ +
Filters individual/instance mappings by comparing literals.
- -
+ +
Basic filter for instances which compares sets like neighbours or properties.
- -
+ +
A very basic string matcher that can be used as baseline for matchers.
- -
+ +
This class considers two Strings to be equal when they contain the same tokens.
- -
+ +
An enum which describes entities on how to optimize the batch size.
- -
 
- -
+ +
 
+ +
Structure based matcher which allows to find matches in hierarchies which are between two already matched entities.
- -
+ +
Configuration objetc for BoundedPathMatching class.
- -
 
- -
+ +
 
+ +
Example: Input: "hello" Output: "Hello"
- -
 
- -
Deprecated. + +
 
+ +
Deprecated.
- -
+ +
This StringModifier removes all characters that are not a letter and then applies the TokenizeSpaceSeparateLowercaseModifier.
- -
+ +
The distance measure to use for clustering.
- -
+ +
An interface to choose between different implementations of clusterers like SMILE library or ELKI.
- -
+ +
Clusterer based on the ELKI library and always using the Andernberg algorithm.
- -
+ +
Clusterer based on the SMILE library.
- -
+ +
Clustering
- -
+ +
The clustering likage.
- -
+ +
Helper class for adding and filtering correspondences based on cluster assignments.
- -
+ +
 
+ +
 
+ +
50% Jaccard, 50% Overlap Coefficient.
- -
+ +
Filter which deletes instance mappings if they have no matched properties in common.
- -
+ +
This class can compute two things:
1) Communities detected by the Louvrain algorithm.
- -
+ +
This enum represents different resource types that may occur in an ontology.
- -
+ +
Combines the additional confidences and set the overall correspondence confidence to be the mean of the selected confidences.
- -
+ +
Filters the alignment by computing the inflection point of the sorted confidences.
- -
+ +
This filter returns only alignments with confidence greater or equals than a specific threshold.
- -
+ +
This class offers static functionality to analyze and optimize matchers in terms of their confidences (and confidence thresholds).
- -
 
- -
+ +
 
+ +
Data Structure for an individual confusion matrix.
- -
 
- -
+ +
 
+ +
Data Structure for an individual confusion matrix.
- -
+ +
Confusion Matrix Metric.
- -
+ +
Defines different modes how a model should be copied during incremental merge.
- -
+ +
A Correspondence contains a relation that holds between two elements from two different ontologies.
- -
+ +
Comparator for Correspondence.
- -
+ +
Enumeration for the relations used in a Correspondence such as "equivalence"/"=".
- -
Deprecated. + +
Deprecated.
use the counter in matching-jena-matchers.
- -
+ +
A Counter is for counting arbitrary objects.
- -
+ +
This class allows to analyze the concept coverage given a data source.
- -
+ +
The result object of Coverage.
- -
 
- -
+ +
 
+ +
This class removes cycles based on the Agony algorithm.
- -
+ +
Generates a dashboard with dc.js components based on the generated csv file.
- -
+ +
Extracts from an URI the corresponding source / dataset identifier (which needs to be included in the URI like a specific domain etc).
- -
+ +
Extracts the dataset id from a whole model based on sampling some resources.
- -
+ +
Extracts the dataset id given a URL pattern which is currently a prefix and infix.
- -
+ +
Extracts the dataset id given a map of URL prefixes and corresponding dataset ID.
- -
+ +
Small utilities for dataset id extraction.
- -
+ +
Store accessible to all matchers where variables and results can be persisted in.
- -
+ +
Link DBpedia embeddings using the "normal" DBpedia linker (DBpediaLinker.
- -
+ +
DBpedia knowledge source.
- -
 
- +
 
- -
+ +
 
+ +
This class is only a helper class.
- -
+ +
Default vocabulary as given by http://alignapi.gforge.inria.fr/labels.html.
- -
+ +
Alignment server extensions.
- -
+ +
Argumentation Extensions
- -
+ +
Dublin Core Extensions
- -
+ +
Linkkey Extensions
- -
+ +
Additional vocabulary introduced with the MELT framework.
- -
+ +
Ontology Metadata Vocabulary being a metadata ontology introduces many different labels that can be used in Alignment and correspondences but also defines it own sorts of objects that can be annotated.
- -
+ +
OMWG Extensions
- -
+ + - -
+ +
Standard API extensions by the AlignmentAPI.
- -
 
- +
 
- -
+ +
 
+ +
A helper class which contains some static function which are often used in dispatchers.
- -
+ +
The job/callable to compute the distance matrix in parallel.
- -
+ +
A result of the distance matrix computation.
- -
+ +
Updates the confidence of already matched resources.
- -
+ +
ResultCallback logging directly using the SLF4J logger.
- -
+ +
An exception when docker is not running.
- -
+ +
ResultCallback collecting the full log and returning it as a single string for further processing.
- -
+ +
A base class for all matchers which write a csv file where every line represents a resource with with cell as identifier like URI and second cell the corresponding tokens (whitespace separated).
- -
+ +
Util to write Dot graphs.
- -
 
- -
+ +
 
+ +
This class considers two Strings to be equal when they contain the same tokens with stopwords removed.
- -
+ +
Removes stopwords before comparing strings.
- -
+ +
This class considers two Strings to be equal when they contain the same tokens with stopwords removed.
- -
+ +
An Error handler that does nothing except for throwing an Exception in fatal cases.
- -
 
- -
+ +
 
+ +
Abstract class for all default evaluators.
- -
+ +
Evaluates the alignments (min/max confidence, type of relations, correct positions of uris etc) and writes the output to the results folder.
- -
+ +
A basic evaluator that is easy on Memory and prints the performance results per test case in CSV format.
- -
+ +
This evaluator simply writes the system alignments of individual ExecutionResult instances to a file in the results folder.
- -
+ +
This evaluator is capable of persisting the results of the matching process in a CSV file (which can be consumed in Excel, for example).
- -
+ +
Implementation of a significance test according to information specified in: Mohammadi, Majid; Atashin, Amir Ahooye; Hofman, Wout; Tan, Yaohua.
- -
+ +
Abstract class for all multisource evaluators.
- -
 
- -
+ +
 
+ +
A basic evaluator that is easy on Memory and prints the performance results per test case in CSV format.
- -
+ +
A rank evaluator which writes a file resultsRanking.csv.
- -
+ +
An evaluator that calculates rank metrics on an per-element basis for each element of a specified source ontology.
+ +
 
A class offering multiple services to evaluators (building blocks for quick evaluator development).
@@ -923,519 +941,535 @@

All Classes and Interfaces<
Extracts the local name from the URI.
- +
-
A track that does not exist on the SEALS repository.
+
This filter asks a LLM which entity of the source fits best to an entity of the target.
- -
 
- + +
+
This filter asks a LLM if a given correspondence is correct or not.
+
+
-
Converts Set of MappingObjectStr to Alignment.
+
This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment).
- +
-
This is the logmap repair filter.
+
A track that does not exist on the SEALS repository.
+
+ +
 
+ +
+
Converts Set of MappingObjectStr to Alignment.
- +
-
Transforms to lower case.
+
This is the logmap repair filter.
- +
-
This filter learns and applies a classifier given a training sample and an existing alignment.
+
Transforms to lower case.
- +
+
This filter learns and applies a classifier given a training sample and an existing alignment.
+
+ +
Non functional code.
- -
 
- -
+ +
 
+ +
This class is used as wrapper for the SEALS external matcher build process.
- -
 
- +
 
- -
+ +
 
+ +
Extracts the main matcher class as a string from a file.
- -
+ +
This class allows to manually inspect the output of a TextExtractor by writing the results to a file or stdout.
- -
+ +
A matcher which matches classes based on already instance matches.
- -
+ +
Matcher for running external matchers (require the subclass to create a command to execute).
- -
+ +
Read the file "external/external_command.txt" and start an external process.
- -
+ +
Combines multiple matchers.
- -
+ +
This matcher creates a docker container based on a given docker image name.
- -
+ +
For this matcher the results file that shall be written can be specified.
- -
+ +
This class wraps a matcher service.
- -
+ +
Multi source matcher which expects URLs as parameters.
- -
 
- -
+ +
 
+ +
Executes all matchers one after the other.
- -
+ +
A matcher template for matchers that are based on YAAA.
- -
+ +
Better use MatcherYAAAPipeline because it can combine matchers which use different APIS like Jena and OWLAPI etc
- -
+ +
Better use MatcherPipelineYAAA because it can combine matchers which use different APIS like Jena and OWLAPI etc.
- -
+ +
Better use MatcherYAAAPipeline because it can combine matchers which use different APIs like Jena and OWLAPI etc.
- -
+ +
This matcher wraps the SEALS client such that a SEALS zip file or folder can be executed.
- -
 
- -
+ +
 
+ +
Resulting object of the MatcherSimilarityMetric calculation.
- -
+ +
This writer can persist MatcherSimilarity objects in a LaTex graph from the perspective of one particular matcher.
- -
+ +
This writer can persist MatcherSimilarity objects in a LaTex Heat Map.
- -
+ +
This writer can persist MatcherSimilarity objects in a LaTex graph.
- -
+ +
This metric allows to compare system results similarity by calculating the jaccard overlap between alignment results.
- -
+ +
Indicator on whether Micro or Macro average shall be used for aggregation operations.
- -
 
- -
+ +
 
+ +
RawMatcher which implements the minimal interface for being executed under the SEALS platform.
- -
-
A matcher template for matchers that are based on the YAAA Framework.
-
- +
A matcher template for matchers that are based on the YAAA Framework.
- +
+
A matcher template for matchers that are based on the YAAA Framework.
+
+ +
A matcher template for matchers that are based on Apache Jena.
- -
 
- -
+ +
 
+ +
An exception which can be thrown by a matcher in case something goes wrong.
- -
+ +
Graph-based Matcher: Checks all matched classes and matches also properties between them (domain and range) with mean value of both classes.
- -
+ +
Matches properties based on same subject and object and the distribution.
- -
+ +
A helper class for mathematical and statistical operations.
- -
+ +
This tokenizer is able to assist in linking labels that consist of multiple concepts to the most specific concept possible.
- -
-
Faster implementation than HungarianExtractor for generating a one-to-one alignment.
-
- +
-
Local data structure.
+
Faster implementation than HungarianExtractor for generating a one-to-one alignment.
- +
Local data structure.
- +
Local data structure.
- -
+ +
+
Local data structure.
+
+ +
How the curvature should be determined.
- -
+ +
Util methods for melt
- -
+ +
Class with helper methods to profile memory usage.
- -
+ +
The class which actually runs a merge in MultiSourceDispatcherIncrementalMerge.
- -
+ +
The information of how KGs should be merged together (in which order).
- -
+ +
Result of the MergeTask
- -
+ +
A task which contains the two knowledge graphs to be merged and the new position of the merged kg.
- -
+ +
This class is a utility class which represents the merge tree is a different way (for which it is easier to calculate the height of the tree).
- -
+ +
Abstract class which represents a metric.
- -
 
- -
 
- -
+ +
 
+ +
 
+ +
Asserts a homogenous alignment (i.e.
- -
 
- -
+ +
 
+ +
The model (ontology / knowledge graph) and the corressponding index in the list of a multisource matching task.
- -
+ +
Algorithm for modularity optimization used in ComputeErrDegree
- -
+ +
A multi concept linker may map one link to multiple concepts in the background knowledge graph.
- -
+ +
Replace multiple texts at once.
- -
+ +
Replace multiple texts at once.
- -
+ +
An interface which indicates that this multisource matcher delegates the task of matching multiple ontologies/knowledge graphs to a one to one matcher.
- -
 
- -
-
Matches multiple ontologies / knowledge graphs with an incremental merge approach.
-
- + +
 
+
Matches multiple ontologies / knowledge graphs with an incremental merge approach.
- +
Matches multiple ontologies / knowledge graphs with an incremental merge approach.
- +
Matches multiple ontologies / knowledge graphs with an incremental merge approach.
- +
-
This dispatcher will match multiple ontologies by selecting a few pairs.
+
Matches multiple ontologies / knowledge graphs with an incremental merge approach.
- +
+
This dispatcher will match multiple ontologies by selecting a few pairs.
+
+ +
This dispatcher will compare the texts in a model and match the ones which are textually the clostest such that a connection between all ontologies exists.
- -
 
- -
+ +
 
+ +
Executes all multi source matchers one after the other.
- -
+ +
Helper class for MaxWeightBipartiteExtractor.
- -
+ +
Initialization heuristic for MaxWeightBipartiteExtractor.
- -
+ +
Helper class for MaxWeightBipartiteExtractor.
- -
+ +
Naive ascending extraction as shown in "Analyzing Mapping Extraction Approaches" (C.
- -
+ +
Naive descending extraction as shown in "Analyzing Mapping Extraction Approaches" (C.
- -
+ +
Internal data structure which represents a tuple of the form (String name, Property property).
- -
 
- -
+ +
 
+ +
Network
- -
+ +
DEV REMARK: Be aware that refactoring the name leads to hardcoded String changes in the LabelToConcept Linker package.
- -
+ +
Creates regular n-grams
- -
 
- -
+ +
 
+ +
Matcher which does nothing but returning a valid empty alignment.
- -
 
- +
 
- -
+ +
 
+ +
A filter which removes correspondences where source or target is matched to more than one entity.
- -
+ +
Converts number to words like 1 to one and 3 to three.
- -
Deprecated. + +
Deprecated.
use parameters file instead.
- -
 
- -
 
- -
 
- +
 
- -
+ +
 
+ +
 
+ +
 
+ +
Data structure storing further information about an ontology.
- -
+ +
Cache and reader for Jena ontologies.
- -
+ +
Cache for ontologies for the OWL Api.
- -
+ +
An OntologyValidationService allows to validate a single ontology, i.e., make sure that the ontology is parseable.
- -
 
- -
+ +
 
+ +
This matching module uses the OpenEA library to match entities.
- -
 
- +
 
- -
+ +
 
+ +
OWL API implementation of OntologyValidationService.
- -
+ +
List all the keys (URLs) which can be used as matching parameters.
- -
+ +
This is a wrapper for PARIS matching system by Fabian Suchanek et al.
- -
 
- -
+ +
 
+ +
Interface which gets a track and uris.
- -
 
- +
 
- -
+ +
 
+ +
A simple persistence service offering stripped-down database operations to other applications.
- -
+ +
Enum with the preconfigured database persistences.
- -
 
- -
+ +
 
+ +
DEV REMARK: Be aware that refactoring the name leads to hardcoded String changes in the LabelToConcept Linker package.
- -
+ +
PorterStemmer, implementing the Porter Stemming Algorithm The PorterStemmer class transforms a word into its root form.
- -
+ +
This class represents a lookup service for Semantic Web prefixes.
- -
+ +
This Mojo will: 1.
- -
 
- -
-
A collector which searches for an alignment URL or creates a file with the content of the lines and returns the url of this file.
-
- -
 
- +
 
- +
-
Transforms a URI to java.uril.Properties.
+
A collector which searches for an alignment URL or creates a file with the content of the lines and returns the url of this file.
- -
 
- + +
 
+
 
- +
+
Transforms a URI to java.uril.Properties.
+
+ +
 
+ +
 
+ +
Define some properties which are used with a similar semantic.
- -
 
- +
 
- -
+ +
 
+ +
A client class to communicate with python libraries such as gensim.
- -
+ +
A python server exception in case something goes wrong or the server is not started or returned no result etc.
- -
 
- -
+ +
 
+ +
This helper class is used to randomly sample resources from an OntModel.
- -
+ +
A helper class to randomly sample elements from an initial set.
- -
+ +
A metric which computes multiple rank metrics such as the NDCG and average precision for an execution result.
- -
 
- -
+ +
 
+ +
Result of the RankingMetric.
- -
+ +
A matcher which tries to detect the testcase and return the reference alignment.
- -
+ +
A refinement operation.
- -
+ +
Removes all reflexive edges (which maps A to A) from an alignment.
- -
+ +
This matcher predicts the relation type given a transformer model.
- -
 
- -
+ +
 
+ +
This matcher predicts the relation type given a transformer model.
+ +
+
The relation type refiner refines all execution results in such a way that only the specified reltion type is used.
+
 
@@ -1540,6 +1574,10 @@

All Classes and Interfaces<
This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
+ +
 
+ +
 
Different methods for set comparison like Overlap coefficient, Jaccard or Sørensen–Dice_coefficient (DSC).
@@ -1590,129 +1628,137 @@

All Classes and Interfaces<

 
- -
 
- -
+ +
+
Exception representing a error when data does not fit to SSSOM schema
+
+ +
 
+ +
The SSSOMParser can parse SSSOM files following the convention described in the SSSOM github and userguide.
- -
 
- -
 
- -
+ +
 
+ +
 
+ +
The SSSOMSerializer can serialize to SSSOM files following the convention described in the SSSOM github and userguide.
- -
+ +
Extracts corpus dependent stopwords from instances, classes and properties.
- -
 
- -
+ +
 
+ +
An interface for classes which define under what conditions two Strings are considered equal.
- -
 
- -
+ +
 
+ +
A simple interface for classes that can modify Strings.
- -
+ +
A helper class for string operations.
- -
+ +
Enum which indicates how shortcuts in camel case are handeled.
- -
 
- -
+ +
 
+ +
Simple data structure representing a String Tuple.
- -
+ +
A collection of useful String operations that can be used for matcher development.
- -
+ +
Interface for external resources that are capable to determine whether two concepts are synonymous given that the concepts are already linked.
- -
+ +
Synonymy can be determined on a continuous scale.
- -
+ +
Matches resource A (source) to B (target) iff they have at least one label in the same synset.
- -
+ +
TDB util for generating and inspecting TDB datasets.
- -
 
- -
+ +
 
+ +
This class reads lines of documents from a directory and saves them in a HashSet.
- -
+ +
A TestCase is an individual matching task that may be a component of a Track.
- -
+ +
POJO which represents a testcase and the information if an entity corresponds to source or target.
- -
+ +
Enumerations of the three files that make up a test case.
- -
+ +
This class analyzes a test case.
- -
+ +
A class which provides supporting functionalities mainly for writing unit tests.
- -
+ +
The supported test types for McNemar significance tests.
- -
+ +
Given a Jena resource, a ValueExtractor can derive zero or more String representations.
- -
+ +
All annotation properties are followed (recursively).
- -
+ +
This extractor uses all literals of the resource.
- -
+ +
This extractor uses all literals which are also strings e.g.
- -
+ +
This extractor is a composer and uses the given extractor in the given order as long as an extractor will yield an result.
- -
+ +
A TextExtractor which extracts texts from a resource which can be used by transformer based matchers like TransformersFilter or TransformersFineTuner.
+ +
+
Extracts a label for the given resource and also creates a text for the superclass such that more context is provided.
+
Given a Jena resource, a ValueExtractor can derive zero or more String representations.
@@ -1727,10 +1773,17 @@

All Classes and Interfaces<
Extracts all values from specific properties as long as it is a literal.
- +
+
Extracts only one speaking label (language can be set in constructor) which can be (in decreasing importance): + skos:prefLabel, rdfs:label, fragment (only if more than 50 percent are not numbers), skos:altLabel, skos:hiddenLabel.
+
+ +
Extracts all values from a specific property as long as it is a literal.
+ +
 
A TextExtractor which extracts texts from a resource which can be used by transformer @@ -1756,65 +1809,67 @@

All Classes and Interfaces<
A text textractor which extracts texts from a resource which can be used by transformer based matchers like TransformersFilter or TransformersFilterFineTuner.

- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- -
+ +
 
+ +
This modifier tokenizes the String to be modified and separates the tokens with spaces.
- -
+ +
This filter keeps only the top X correspondences according to confidence.
- -
+ +
Filter mode.
- -
+ +
This class represents a track from OAEI like anatomy, conference or multifarm etc.
- -
+ +
Track repository which lists all different tracks in possibly multiple versions.
- -
+ +
Anatomy track.
- -
+ +
Biodiv track.
- -
+ +
Bio-ML: A ML-friendly Biomedical track for Equivalence and Subsumption Matching.
This track presents an unified evaluation framework suitable for both ML-based and non-ML-based OM systems.
- -
+ +
The 2022 edition involves the following ontologies: OMIM (Online Mendelian Inheritance in Man) @@ -1826,124 +1881,128 @@

All Classes and Interfaces< See also https://doi.org/10.5281/zenodo.6510086.

- -
+ +
This track evaluates the ability of matching systems to map the schema (classes) of large common knowledge graphs such as DBpedia, YAGO and NELL.
- -
+ +
Complex track.
- -
+ +
Conference track.
- -
+ +
Doremus track.
- -
+ +
Food Nutritional Composition track.
- -
+ +
IIMB track.
- -
+ +
Instance Matching
- -
+ +
Knowledgegraph track.
- -
+ +
Laboratory Analytics Domain track.
- -
+ +
Large Biomedical Ontologies.
- -
+ +
2015 version of Large Biomedical Ontologies.
- -
+ +
2016 version of Large Biomedical Ontologies - these are also used for 2017 and 2018.
- -
+ +
HOBBIT Link Discovery.
- -
+ +
Material Sciences and Engineering track.
- -
+ +
Multifarm track.
- -
+ + - -
+ +
Disease and Phenotype track.
- -
+ +
2016 version of DiseasePhenotype Track
- -
+ +
2017 version of DiseasePhenotype Track (HP_MP and DOID_ORDO also used in 2018)
- -
+ +
Process Matching Track (last run in 2017) For more info see Process Matching Track Website
- -
+ +
HOBBIT Spimbench The goal of this track is to determine when two OWL instances describe the same Creative Work.
- -
 
- +
 
- +
 
- +
 
- +
 
- -
+ +
 
+ +
This class analyzes a track (i.e., its individual test cases).
- -
Deprecated. + +
Deprecated.
replacement is to use AddNegativesViaMatcher which has the same functionality (but it really uses only correspondences with equivalence relation as positive correspondences) .
- -
+ +
A class which can do a train test split for arbitrary data items.
- -
+ +
A class which can do a train test split for arbitrary data items.
- -
 
- +
 
+ +
 
+ +
+
This class represents the arguments for the transformers library.
+
This is a base class for all Transformers.
@@ -1966,22 +2025,14 @@

All Classes and Interfaces<
This class represents the search space for hyper parameters.
- -
-
This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
-
- -
+ +
The transformers library may not free all memory from GPU.
- -
+ +
The enum which represents the possible measure for evaluating a model during hyperparameter search.
- -
-
This class represents the arguments for the huggingface trainer.
-
Computes a transitive closure in RAM.
diff --git a/javadoc_latest/allpackages-index.html b/javadoc_latest/allpackages-index.html index aa42d7a59c..54c962aaed 100644 --- a/javadoc_latest/allpackages-index.html +++ b/javadoc_latest/allpackages-index.html @@ -96,183 +96,185 @@

All Packages

 
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- -
+ +
 
+ +
This package contains classes which support external knowledge sources that can be used for matching.
- -
 
- +
 
- +
 
- +
 
- -
+ +
 
+ +
This package contains preconfigured matcher content that can be used in matching pipelines or as an example/reference for a new background-based matcher.
- -
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- -
+ +
 
+ +
This package contains mapping extraction approaches as shown in Analyzing Mapping Extraction Approaches - C.
- -
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- +
 
- -
+ +
 
+ +
This package contains a client to consume KGvec2go vectors easily in Java.
- -
 
- +
 
- +
 
- +
 
- +
 
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+ +
 
diff --git a/javadoc_latest/constant-values.html b/javadoc_latest/constant-values.html index 5babb60d6d..694a96d6c4 100644 --- a/javadoc_latest/constant-values.html +++ b/javadoc_latest/constant-values.html @@ -981,6 +981,17 @@

de.uni_mannheim.*

"http://exmo.inrialpes.fr/align/ext/1.0/#"
+
  • +
    de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMFormatException
    +
    +
    Modifier and Type
    +
    Constant Field
    +
    Value
    +
    private static final long
    + +
    5451825154955645498L
    +
    +
  • -
    This filter removes correspondences where the source or target has not the same host of the OntModels.
    +
    This filter removes correspondences where the source or target is a blank node.
    class 
    @@ -297,18 +297,33 @@

    Uses of Class

    Description
    class 
    -
    +
    -
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target.
    class 
    - +
    -
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    This filter asks a LLM if a given correspondence is correct or not.
    class 
    - -
     
    + +
    +
    This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment).
    +
    +
    class 
    + +
    +
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    +
    class 
    + +
    +
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    +
    class 
    + +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/IMatcher.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/IMatcher.html index 42a7a20129..1ab8ff3651 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/IMatcher.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/IMatcher.html @@ -324,7 +324,7 @@

    Uses of class 

    -
    This filter removes correspondences where the source or target has not the same host of the OntModels.
    +
    This filter removes correspondences where the source or target is a blank node.
    class 
    @@ -480,6 +480,16 @@

    Uses of Class

    Description
    class 
    +
    +
    +
    Adds the provided extensions to the alignment when the matcher is executed.
    +
    +
    class 
    + +
    +
    This is a simple matcher that adds a given alignment to the inputAlignment.
    +
    +
    class 
    Adds an additional confidence by a user chosen function which gets a ontResource and has to return a double.
    @@ -663,43 +673,53 @@

    Uses of Class

    Description
    class 
    -
    +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target.
    class 
    - +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter asks a LLM if a given correspondence is correct or not.
    class 
    - +
    -
    This is a base class for all Transformers.
    +
    This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment).
    class 
    - +
    -
    This is a base class for all Transformers fine tuners.
    +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    class 
    - +
    -
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    class 
    - +
    -
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    This is a base class for all Transformers.
    class 
    - -
     
    + +
    +
    This is a base class for all Transformers fine tuners.
    +
    class 
    - +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    class 
    + +
    +
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    +
    class 
    + +
     

    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/MatcherFile.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/MatcherFile.html index e9a06a1359..e773c209c3 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/MatcherFile.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/MatcherFile.html @@ -307,7 +307,7 @@

    Uses of class 

    -
    This filter removes correspondences where the source or target has not the same host of the OntModels.
    +
    This filter removes correspondences where the source or target is a blank node.
    class 
    @@ -463,6 +463,16 @@

    Uses of Class

    Description
    class 
    +
    +
    +
    Adds the provided extensions to the alignment when the matcher is executed.
    +
    +
    class 
    + +
    +
    This is a simple matcher that adds a given alignment to the inputAlignment.
    +
    +
    class 
    Adds an additional confidence by a user chosen function which gets a ontResource and has to return a double.
    @@ -638,43 +648,53 @@

    Uses of Class

    Description
    class 
    -
    +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target.
    class 
    - +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter asks a LLM if a given correspondence is correct or not.
    class 
    - +
    -
    This is a base class for all Transformers.
    +
    This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment).
    class 
    - +
    -
    This is a base class for all Transformers fine tuners.
    +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    class 
    - +
    -
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    class 
    - +
    -
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    This is a base class for all Transformers.
    class 
    - -
     
    + +
    +
    This is a base class for all Transformers fine tuners.
    +
    class 
    - +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    class 
    + +
    +
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    +
    class 
    + +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/MatcherURL.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/MatcherURL.html index 4465a20520..f6ebd31e33 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/MatcherURL.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/MatcherURL.html @@ -418,7 +418,7 @@

    Uses of class 

    -
    This filter removes correspondences where the source or target has not the same host of the OntModels.
    +
    This filter removes correspondences where the source or target is a blank node.
    class 
    @@ -574,6 +574,16 @@

    Uses of Class

    Description
    class 
    +
    +
    +
    Adds the provided extensions to the alignment when the matcher is executed.
    +
    +
    class 
    + +
    +
    This is a simple matcher that adds a given alignment to the inputAlignment.
    +
    +
    class 
    Adds an additional confidence by a user chosen function which gets a ontResource and has to return a double.
    @@ -749,43 +759,53 @@

    Uses of Class

    Description
    class 
    -
    +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target.
    class 
    - +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter asks a LLM if a given correspondence is correct or not.
    class 
    - +
    -
    This is a base class for all Transformers.
    +
    This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment).
    class 
    - +
    -
    This is a base class for all Transformers fine tuners.
    +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    class 
    - +
    -
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    class 
    - +
    -
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    This is a base class for all Transformers.
    class 
    - -
     
    + +
    +
    This is a base class for all Transformers fine tuners.
    +
    class 
    - +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    class 
    + +
    +
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    +
    class 
    + +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/TrackRepository.Complex.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/TrackRepository.Complex.html index 3b1872b25c..981c1155f8 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/TrackRepository.Complex.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/TrackRepository.Complex.html @@ -103,24 +103,24 @@

    Field Summary

    The hydrography dataset is composed of four source ontologies (Hydro3, HydrOntology_native, HydrOntology_translated, and Cree) that each should be aligned to a single target Surface Water Ontology (SWO).
    -
    static Track
    +
    static final Track
    Popconference
    -
    static Track
    +
    static final Track
     
    -
    static Track
    +
    static final Track
     
    -
    static Track
    +
    static final Track
     
    -
    static Track
    +
    static final Track
     
    -
    static Track
    +
    static final Track
     
    static Track
    @@ -198,38 +198,38 @@

    Popenslaved

  • Popconference0

    -
    public static Track Popconference0
    +
    public static final Track Popconference0
    Popconference
  • Popconference20

    -
    public static Track Popconference20
    +
    public static final Track Popconference20
  • Popconference40

    -
    public static Track Popconference40
    +
    public static final Track Popconference40
  • Popconference60

    -
    public static Track Popconference60
    +
    public static final Track Popconference60
  • Popconference80

    -
    public static Track Popconference80
    +
    public static final Track Popconference80
  • Popconference100

    -
    public static Track Popconference100
    +
    public static final Track Popconference100
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/TrackRepository.Conference.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/TrackRepository.Conference.html index 9cf03bcc99..fa2b5df40f 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/TrackRepository.Conference.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/TrackRepository.Conference.html @@ -100,12 +100,12 @@

    Field Summary

    Experimental Track for conference which maps conference ontologies to DBpedia.
    -
    static Track
    +
    static final Track
    Conference Testsuite V1 which is used all the time.
    -
    static Track
    +
    static final Track
    Conference Testsuite V1 with all test cases ( even without reference alignment
    @@ -147,14 +147,14 @@

    Field Details

  • V1

    -
    public static Track V1
    +
    public static final Track V1
    Conference Testsuite V1 which is used all the time.
  • V1_ALL_TESTCASES

    -
    public static Track V1_ALL_TESTCASES
    +
    public static final Track V1_ALL_TESTCASES
    Conference Testsuite V1 with all test cases ( even without reference alignment
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/class-use/TestCase.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/class-use/TestCase.html index 76f2db3b8a..08ef05d71c 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/class-use/TestCase.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/class-use/TestCase.html @@ -567,6 +567,23 @@

    Uses of
    Run an individual matcher on an individual test case.

    + +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Object newMatcher, + String newMatcherName)
    +
    +
    Runs a matcher on top of another.
    +
    + +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Map<String,Object> newMatchers)
    +
    +
    Runs a matcher on top of another.
    +
    Executor.runSingle(TestCase testCase, Object matcher)
    @@ -705,6 +722,12 @@

    Uses of
    Write the overview file, i.e.

    +
    private void
    +
    EvaluatorRelationTypePrediction.writeOverviewFileMatcherTestCase(List<RelationTypeRefiner> refiners, + TestCase testCase, + String matcher, + org.apache.commons.csv.CSVPrinter printer)
    +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/class-use/Track.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/class-use/Track.html index b002e370f2..f667f25ff5 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/class-use/Track.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_data/class-use/Track.html @@ -277,24 +277,24 @@

    Uses of
    Non official: Covers all WHOLE test cases.

    - +
    static final Track
    TrackRepository.Complex.Popconference0
    Popconference
    -
    static Track
    +
    static final Track
    TrackRepository.Complex.Popconference100
     
    -
    static Track
    +
    static final Track
    TrackRepository.Complex.Popconference20
     
    -
    static Track
    +
    static final Track
    TrackRepository.Complex.Popconference40
     
    -
    static Track
    +
    static final Track
    TrackRepository.Complex.Popconference60
     
    -
    static Track
    +
    static final Track
    TrackRepository.Complex.Popconference80
     
    static Track
    @@ -380,7 +380,7 @@

    Uses of static final Track

    TrackRepository.ProcessMatching.UA
     
    -
    static Track
    +
    static final Track
    TrackRepository.Conference.V1
    Conference Testsuite V1 which is used all the time.
    @@ -411,7 +411,7 @@

    Uses of

    -
    static Track
    +
    static final Track
    TrackRepository.Conference.V1_ALL_TESTCASES
    Conference Testsuite V1 with all test cases ( even without reference alignment
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/Executor.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/Executor.html index 4af5823c5f..71f3dd7359 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/Executor.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/Executor.html @@ -315,10 +315,40 @@

    Method Summary

    Run matchers on a set of test cases.
    + +
    runMatcherOnTop(ExecutionResult oldResult, + Object newMatcher, + String newMatcherName)
    +
    +
    Runs a matcher on top of another.
    +
    + +
    runMatcherOnTop(ExecutionResult oldResult, + Map<String,Object> newMatchers)
    +
    +
    Runs a matcher on top of another.
    +
    + +
    runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Object newMatcher, + String newMatcherName)
    +
    +
    Runs a matcher on top of another.
    +
    + +
    runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Map<String,Object> newMatchers)
    +
    +
    Runs a matcher on top of another.
    +
    runMatcherOnTop(ExecutionResultSet oldResults, String oldMatcherName, - Object matcher, + Object newMatcher, String newMatcherName)
    Runs a matcher on top of another.
    @@ -327,7 +357,9 @@

    Method Summary

    runMatcherOnTop(ExecutionResultSet oldResults, String oldMatcherName, Map<String,Object> newMatchers)
    -
     
    +
    +
    Runs a matcher on top of another.
    +
    runSingle(TestCase testCase, Object matcher)
    @@ -935,15 +967,16 @@

    getSummedRuntimeOfAllUnrefinedResults

    runMatcherOnTop

    public static ExecutionResultSet runMatcherOnTop(ExecutionResultSet oldResults, String oldMatcherName, - Object matcher, + Object newMatcher, String newMatcherName)
    -
    Runs a matcher on top of another. This means that the previous matchings do not need to be recalculated.
    +
    Runs a matcher on top of another. This means that the previous matchings do not need to be recalculated. + This will run the matcher on all testcases.
    Parameters:
    oldResults - the results from the previous runs already containing result from the oldMatcherName.
    oldMatcherName - the matcher name which should exist in previous results
    +
    newMatcher - the new matcher
    newMatcherName - the new matcher name
    -
    matcher - the actual matcher
    Returns:
    the execution results together with the new matcher
    @@ -955,6 +988,92 @@

    runMatcherOnTop

    public static ExecutionResultSet runMatcherOnTop(ExecutionResultSet oldResults, String oldMatcherName, Map<String,Object> newMatchers)
    +
    Runs a matcher on top of another. This means that the previous matchings do not need to be recalculated. + This will run the matcher on all testcases.
    +
    +
    Parameters:
    +
    oldResults - the results from the previous runs already containing result from the oldMatcherName.
    +
    oldMatcherName - the matcher name which should exist in previous results
    +
    newMatchers - the new matchers as a map where the key is the matcher name and value the actual matcher
    +
    Returns:
    +
    the execution results together with the new matcher
    +
    + + +
  • +
    +

    runMatcherOnTop

    +
    public static ExecutionResultSet runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Object newMatcher, + String newMatcherName)
    +
    Runs a matcher on top of another. This means that the previous matchings do not need to be recalculated. + This will run the matcher only on the specified test case.
    +
    +
    Parameters:
    +
    oldResults - the results from the previous runs already containing result from the oldMatcherName.
    +
    testCase - the testcase on which the matchers should be executed.
    +
    oldMatcherName - the matcher name which should exist in previous results
    +
    newMatcher - the new matcher
    +
    newMatcherName - the new matcher name
    +
    Returns:
    +
    the execution results together with the new matcher
    +
    +
    +
  • +
  • +
    +

    runMatcherOnTop

    +
    public static ExecutionResultSet runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Map<String,Object> newMatchers)
    +
    Runs a matcher on top of another. This means that the previous matchings do not need to be recalculated. + This will run the matcher only on the specified test case.
    +
    +
    Parameters:
    +
    oldResults - the results from the previous runs already containing result from the oldMatcherName.
    +
    testCase - the testcase on which the matchers should be executed.
    +
    oldMatcherName - the matcher name which should exist in previous results
    +
    newMatchers - the new matchers as a map where the key is the matcher name and value the actual matcher
    +
    Returns:
    +
    the execution results together with the new matcher
    +
    +
    +
  • +
  • +
    +

    runMatcherOnTop

    +
    public static ExecutionResultSet runMatcherOnTop(ExecutionResult oldResult, + Map<String,Object> newMatchers)
    +
    Runs a matcher on top of another. This means that the previous matchings do not need to be recalculated. + This will run the matcher on exactly one execution result.
    +
    +
    Parameters:
    +
    oldResult - the old result
    +
    newMatchers - the new matchers as a map where the key is the matcher name and value the actual matcher
    +
    Returns:
    +
    the execution results together with the new matcher
    +
    +
    +
  • +
  • +
    +

    runMatcherOnTop

    +
    public static ExecutionResult runMatcherOnTop(ExecutionResult oldResult, + Object newMatcher, + String newMatcherName)
    +
    Runs a matcher on top of another. This means that the previous matchings do not need to be recalculated. + This will run the matcher on exactly one execution result.
    +
    +
    Parameters:
    +
    oldResult - the old result
    +
    newMatcher - the new matcher
    +
    newMatcherName - the new matcher name
    +
    Returns:
    +
    the execution results together with the new matcher
    +
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/class-use/ExecutionResult.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/class-use/ExecutionResult.html index ea62cb111b..52560a488f 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/class-use/ExecutionResult.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/class-use/ExecutionResult.html @@ -64,22 +64,24 @@

     

     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    + +
     
    -
    Executor.runSingle(TestCase testCase, - Object matcher)
    +
    Executor.runMatcherOnTop(ExecutionResult oldResult, + Object newMatcher, + String newMatcherName)
    -
    Run a single test case with one matcher.
    +
    Runs a matcher on top of another.
    -
    Executor.runSingle(TestCase testCase, +
    Executor.runSingle(TestCase testCase, + Object matcher)
    +
    +
    Run a single test case with one matcher.
    +
    + +
    Executor.runSingle(TestCase testCase, Object matcher, String matcherName)
    -
    +
    Run a single test case with one matcher.
    -
    protected ExecutionResult
    -
    ExecutorSeals.runUnzippedMatcher(TestCase testCase, +
    protected ExecutionResult
    +
    ExecutorSeals.runUnzippedMatcher(TestCase testCase, File matcherDirectory)
    -
    +
    Evaluate a single matcher using the local SEALS client.
    -
    protected ExecutionResult
    -
    ExecutorSeals.runUnzippedMatcher(TestCase testCase, +
    protected ExecutionResult
    +
    ExecutorSeals.runUnzippedMatcher(TestCase testCase, File matcherDirectory, String matcherName)
    -
    +
    Evaluate a single matcher using the local SEALS client.
    @@ -274,6 +283,19 @@

    Uses of ExecutionResultSet.get(ExecutionResult basisResult, Refiner... refinements)

     
    + +
    Executor.runMatcherOnTop(ExecutionResult oldResult, + Object newMatcher, + String newMatcherName)
    +
    +
    Runs a matcher on top of another.
    +
    + +
    Executor.runMatcherOnTop(ExecutionResult oldResult, + Map<String,Object> newMatchers)
    +
    +
    Runs a matcher on top of another.
    +
    Method parameters in de.uni_mannheim.informatik.dws.melt.matching_eval with type arguments of type ExecutionResult
    @@ -309,13 +331,23 @@

    Uses of Modifier and Type

    Method
    Description
    -
    -
    Evaluator.getResultsDirectoryTrackTestcaseMatcher(File baseDirectory, + +
    EvaluatorRelationTypePrediction.getConfusionMap(ExecutionResult r)
    +
     
    +
    protected File
    +
    Evaluator.getResultsDirectoryTrackTestcaseMatcher(File baseDirectory, ExecutionResult executionResult)
    -
    +
    Given a base directory and an ExecutionResult, the target directory will be returned to which results can be persisted.
    +
    private void
    +
    EvaluatorRelationTypePrediction.printCM(ExecutionResult r, + ConfusionMatrix cm, + String name, + String closure, + org.apache.commons.csv.CSVPrinter printer)
    +
     
    private void
    +
    private void
    +
    +
     
    Method parameters in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator with type arguments of type ExecutionResult
    Modifier and Type
    Method
    Description
    -
    static long
    - +
    private String[]
    +
     
    +
    static long
    + +
     
    @@ -465,6 +504,23 @@

    Uses of +

    Uses of ExecutionResult in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation

    + +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    void
    +
    CMRelation.bla(ExecutionResult r)
    +
     
    + +
    CMRelationMetric.compute(ExecutionResult executionResult)
    +
     
    +
    + + +
  • Uses of ExecutionResult in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking

    @@ -704,13 +760,19 @@

    Uses of Method

  • Description
    -
    ConfidenceRefiner.refine(ExecutionResult toBeRefined)
    +
    AlignmentClosureRefiner.refine(ExecutionResult toBeRefined)
     
    -
    Refiner.refine(ExecutionResult toBeRefined)
    -
    +
    ConfidenceRefiner.refine(ExecutionResult toBeRefined)
    +
     
    + +
    Refiner.refine(ExecutionResult toBeRefined)
    +
    Create a new refined ExecutionResult from an ExecutionResult.
    + +
    RelationTypeRefiner.refine(ExecutionResult toBeRefined)
    +
     
    ResidualRefiner.refine(ExecutionResult toBeRefined)
     
    @@ -724,13 +786,19 @@

    Uses of Method

    Description
    -
    ConfidenceRefiner.refine(ExecutionResult toBeRefined)
    +
    AlignmentClosureRefiner.refine(ExecutionResult toBeRefined)
     
    -
    Refiner.refine(ExecutionResult toBeRefined)
    -
    +
    ConfidenceRefiner.refine(ExecutionResult toBeRefined)
    +
     
    + +
    Refiner.refine(ExecutionResult toBeRefined)
    +
    Create a new refined ExecutionResult from an ExecutionResult.
    + +
    RelationTypeRefiner.refine(ExecutionResult toBeRefined)
    +
     
    ResidualRefiner.refine(ExecutionResult toBeRefined)
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/class-use/ExecutionResultSet.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/class-use/ExecutionResultSet.html index d77492d2bb..d429d8995a 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/class-use/ExecutionResultSet.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/class-use/ExecutionResultSet.html @@ -267,41 +267,66 @@

    Uses of Evaluate matcher(s) using the local SEALS client.

    -
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, +
    Executor.runMatcherOnTop(ExecutionResult oldResult, + Map<String,Object> newMatchers)
    +
    +
    Runs a matcher on top of another.
    +
    + +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, String oldMatcherName, - Object matcher, + Object newMatcher, String newMatcherName)
    +
    +
    Runs a matcher on top of another.
    +
    + +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Map<String,Object> newMatchers)
    Runs a matcher on top of another.
    -
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, String oldMatcherName, - Map<String,Object> newMatchers)
    -
     
    + Object newMatcher, + String newMatcherName)
    +
    +
    Runs a matcher on top of another.
    +
    -
    Executor.runTracks(List<Track> tracks, - Object... matchers)
    +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, + String oldMatcherName, + Map<String,Object> newMatchers)
    -
    Run matchers on multiple tracks.
    +
    Runs a matcher on top of another.
    -
    Executor.runTracks(List<Track> tracks, +
    Executor.runTracks(List<Track> tracks, + Object... matchers)
    +
    +
    Run matchers on multiple tracks.
    +
    + +
    Executor.runTracks(List<Track> tracks, Object matcher, String name)
    -
    +
    Run one matcher with a given name on multiple tracks.
    - -
    Executor.runTracks(List<Track> tracks, + +
    Executor.runTracks(List<Track> tracks, Map<String,Object> matchers)
    -
    +
    Run multiple matchers on multiple tracks.
    - -
    ExecutorParallel.runTracks(List<Track> tracks, + +
    ExecutorParallel.runTracks(List<Track> tracks, Map<String,Object> matchers)
    -
     
    +
     
     
    +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Object newMatcher, + String newMatcherName)
    +
    +
    Runs a matcher on top of another.
    +
    + +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, + TestCase testCase, + String oldMatcherName, + Map<String,Object> newMatchers)
    +
    +
    Runs a matcher on top of another.
    +
    +
    Executor.runMatcherOnTop(ExecutionResultSet oldResults, String oldMatcherName, - Object matcher, + Object newMatcher, String newMatcherName)
    Runs a matcher on top of another.
    @@ -328,7 +370,9 @@

    Uses of Executor.runMatcherOnTop(ExecutionResultSet oldResults, String oldMatcherName, Map<String,Object> newMatchers)

    -
     
    +
    +
    Runs a matcher on top of another.
    +
    @@ -470,6 +514,9 @@

    Uses of
    Constructor

    +
     
    +
    +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/Evaluator.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/Evaluator.html index c466223f3c..475e3d0708 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/Evaluator.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/Evaluator.html @@ -77,7 +77,7 @@

    Class Evaluator

    Direct Known Subclasses:
    -
    DashboardBuilder, EvaluatorAlignmentAnalyzer, EvaluatorBasic, EvaluatorCopyResults, EvaluatorCSV, EvaluatorMcNemarSignificance, EvaluatorPipeline, EvaluatorRank, EvaluatorRankGroup, ResultsPageHTML, ResultsPageLatex
    +
    DashboardBuilder, EvaluatorAlignmentAnalyzer, EvaluatorBasic, EvaluatorCopyResults, EvaluatorCSV, EvaluatorMcNemarSignificance, EvaluatorPipeline, EvaluatorRank, EvaluatorRankGroup, EvaluatorRelationTypePrediction, ResultsPageHTML, ResultsPageLatex

    public abstract class Evaluator diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/EvaluatorCSV.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/EvaluatorCSV.html index 5bfe0869a7..1700e57675 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/EvaluatorCSV.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/EvaluatorCSV.html @@ -237,139 +237,142 @@

    Method Summary

    This method flushes and closes global printers.
    private String[]
    - -
    + +
     
    +
    private String[]
    + +
    Given the existing extension values of an alignment, determine what to write in the CSV file.
    -
    private ArrayList<String>
    - -
    +
    private ArrayList<String>
    + +
    This method determines the unique Alignment extensions that are used in the alignments in the ExecutionResultSet.
    -
    private String
    - -
    +
    private String
    + +
    Obtain an output stream that can be used to write the CSV file.
    - - -
    + + +
    Obtain an output stream that can be used to write the CSV file.
    -
    eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge
    - -
     
    - - +
    eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge
    +
     
    -
    private ArrayList<String>
    - -
    + + +
     
    +
    private ArrayList<String>
    + +
    This method determines the unique Correspondence extensions that are used in the alignments.
    -
    static org.apache.commons.csv.CSVFormat
    - -
    +
    static org.apache.commons.csv.CSVFormat
    + +
    Returns the CSV format used to write all CSV files.
    -
    static String
    -
    getFormattedRuntime(long nanoSeconds)
    -
     
    -
    private List<String>
    - -
    -
    Get the header row for the aggregated results on a per matcher basis.
    -
    +
    static String
    +
    getFormattedRuntime(long nanoSeconds)
    +
     
    private List<String>
    - +
    -
    Get the header row for the individual statistics.
    +
    Get the header row for the aggregated results on a per matcher basis.
    private List<String>
    - +
    -
    Get the header row for the individual statistics in the overall CSV file.
    +
    Get the header row for the individual statistics.
    private List<String>
    - +
    Get the header row for the individual statistics in the overall CSV file.
    - - -
     
    -
    static long
    - -
     
    -
    static String
    - +
    private List<String>
    + +
    +
    Get the header row for the individual statistics in the overall CSV file.
    +
    + + +
     
    +
    static long
    +
     
    -
    private void
    -
    initializePrinters(File baseDirectory)
    -
    +
    static String
    + +
     
    +
    private void
    +
    initializePrinters(File baseDirectory)
    +
    This method initializes global writers for the performance KPI CSV files.
    -
    boolean
    - -
     
    boolean
    - +
     
    boolean
    - +
     
    boolean
    - +
     
    -
    void
    -
    setBaselineMatcher(eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge baselineMatcher)
    +
    boolean
    +
     
    void
    - +
    setBaselineMatcher(eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge baselineMatcher)
     
    void
    -
    setCopyAlignmentFiles(boolean copyAlignmentFiles)
    -
     
    -
    static void
    -
    setCsvFormat(org.apache.commons.csv.CSVFormat csvFormat)
    -
     
    -
    void
    -
    setPrintAlignmentExtensions(boolean printAlignmentExtensions)
    +
     
    void
    -
    setPrintAsShortenedString(boolean printAsShortenedString)
    +
    setCopyAlignmentFiles(boolean copyAlignmentFiles)
    +
     
    +
    static void
    +
    setCsvFormat(org.apache.commons.csv.CSVFormat csvFormat)
    +
     
    +
    void
    +
    setPrintAlignmentExtensions(boolean printAlignmentExtensions)
     
    void
    -
    setPrintCorrespondenceExtensions(boolean printCorrespondenceExtensions)
    +
    setPrintAsShortenedString(boolean printAsShortenedString)
     
    void
    - +
    setPrintCorrespondenceExtensions(boolean printCorrespondenceExtensions)
     
    -
    (package private) String[]
    -
    toStringArrayWithArrayAtTheEnd(String[] putAtTheEnd, +
    void
    + +
     
    +
    (package private) String[]
    +
    toStringArrayWithArrayAtTheEnd(String[] putAtTheEnd, Object... individualValues)
    -
    +
    Creates one string array where the putAtTheEnd values are arranged at the end of the string.
    -
    private void
    -
    writeAggregatedFileMatcherTrack(Track track, +
    private void
    +
    writeAggregatedFileMatcherTrack(Track track, String matcher, File baseDirectory)
    -
    +
    Write the aggregated overview file, i.e.
    -
    private void
    -
    writeOverviewFileMatcherTestCase(TestCase testCase, +
    private void
    +
    writeOverviewFileMatcherTestCase(TestCase testCase, String matcher, File baseDirectory, boolean onlyCalculateCube)
    -
    +
    Write the overview file, i.e.
    -
    void
    - -
     
    +
    void
    + +
     
    @@ -724,6 +727,12 @@

    determineAlignmentExtensionValuesToWriteForCSV

  • +
    +

    determineAggregatedAlignmentExtensionValuesToWriteForCSV

    +
    private String[] determineAggregatedAlignmentExtensionValuesToWriteForCSV(Set<ExecutionResult> results)
    +
    +
  • +
  • getHeaderIndividual

    private List<String> getHeaderIndividual()
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/EvaluatorRelationTypePrediction.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/EvaluatorRelationTypePrediction.html new file mode 100644 index 0000000000..64d2b60f93 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/EvaluatorRelationTypePrediction.html @@ -0,0 +1,342 @@ + + + + +EvaluatorRelationTypePrediction (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + +
    + +

    Class EvaluatorRelationTypePrediction

    +
    +
    java.lang.Object +
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.Evaluator +
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
    +
    +
    +
    +
    public class EvaluatorRelationTypePrediction +extends Evaluator
    +
    +
    + +
    +
    + +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/class-use/Evaluator.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/class-use/Evaluator.html index d90f6e070a..54b9c0d952 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/class-use/Evaluator.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/class-use/Evaluator.html @@ -111,6 +111,9 @@

    Uses of
    An evaluator that calculates rank metrics on an per-element basis for each element of a specified source ontology.

  • +
    class 
    +
    +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/class-use/EvaluatorRelationTypePrediction.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/class-use/EvaluatorRelationTypePrediction.html new file mode 100644 index 0000000000..4500a5dbf5 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/class-use/EvaluatorRelationTypePrediction.html @@ -0,0 +1,61 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction

    +
    +No usage of de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/Metric.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/Metric.html index 8db653f734..1ca5ff8f2e 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/Metric.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/Metric.html @@ -77,7 +77,7 @@

    Class Metric<MetricResult>

    Direct Known Subclasses:
    -
    AlignmentAnalyzerMetric, ConfusionMatrixMetric, RankingMetric, RankingMetricGroup
    +
    AlignmentAnalyzerMetric, CMRelationMetric, ConfusionMatrixMetric, RankingMetric, RankingMetricGroup

    public abstract class Metric<MetricResult> diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/alignmentanalyzer/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/alignmentanalyzer/package-summary.html index 6b6977ee4b..5773264149 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/alignmentanalyzer/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/alignmentanalyzer/package-summary.html @@ -76,10 +76,12 @@

     

     
    - +
     
    - +
     
    + +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/class-use/Metric.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/class-use/Metric.html index 39a730d416..dc6e4b4bda 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/class-use/Metric.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/class-use/Metric.html @@ -58,8 +58,10 @@

     

     
    - +
     
    + +
     
    + +
  • Uses of Metric in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking

    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/class-use/ConfusionMatrix.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/class-use/ConfusionMatrix.html index 3e311e9546..ccc187d398 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/class-use/ConfusionMatrix.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/class-use/ConfusionMatrix.html @@ -54,16 +54,36 @@

    Package
    Description
    - +
     
    - +
     
    - +
     
    + +
     

  • + +
    EvaluatorRelationTypePrediction.metric
    +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/package-summary.html index b2687c8c84..b1f4a2c010 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/package-summary.html @@ -76,10 +76,12 @@

     

     
    - +
     
    - +
     
    + +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/package-use.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/package-use.html index 020828655b..0bfc14eca7 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/package-use.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cm/package-use.html @@ -71,8 +71,12 @@

    Class
    Description
    - +
    +
    Data Structure for an individual confusion matrix.
    +
    + +
    Confusion Matrix Metric.

    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/CMRelation.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/CMRelation.html new file mode 100644 index 0000000000..50847493a7 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/CMRelation.html @@ -0,0 +1,191 @@ + + + + +CMRelation (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + + +
    java.lang.Object +
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelation
    +
    +
    +
    +
    public class CMRelation +extends Object
    +
    +
    + +
    +
    + +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/CMRelationMetric.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/CMRelationMetric.html new file mode 100644 index 0000000000..f1b1347e82 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/CMRelationMetric.html @@ -0,0 +1,262 @@ + + + + +CMRelationMetric (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + + +
    java.lang.Object +
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.Metric<CMRelation> +
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
    +
    +
    +
    +
    public class CMRelationMetric +extends Metric<CMRelation>
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        LOGGER

        +
        private static final org.slf4j.Logger LOGGER
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        CMRelationMetric

        +
        public CMRelationMetric()
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        compute

        +
        public CMRelation compute(ExecutionResult executionResult)
        +
        +
        Specified by:
        +
        compute in class Metric<CMRelation>
        +
        +
        +
      • +
      • +
        +

        enhanceAlignment

        +
        public static Alignment enhanceAlignment(URI kgOne, + URI kgTwo, + URI alignment)
        +
        +
      • +
      • +
        +

        enhanceAlignment

        +
        public static Alignment enhanceAlignment(org.apache.jena.rdf.model.Model kgOne, + org.apache.jena.rdf.model.Model kgTwo, + Alignment alignment)
        +
        +
      • +
      • +
        +

        isContained

        +
        private static boolean isContained(org.apache.jena.rdf.model.Model model, + String uri)
        +
        +
      • +
      • +
        +

        addModelInformation

        +
        private static void addModelInformation(org.apache.jena.rdf.model.Model m, + Map<String,Set<String>> subClassOfMap)
        +
        +
      • +
      • +
        +

        bfs

        +
        private static Set<String> bfs(Map<String,Set<String>> edges, + String startPoint)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/class-use/CMRelation.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/class-use/CMRelation.html new file mode 100644 index 0000000000..c91eac68e3 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/class-use/CMRelation.html @@ -0,0 +1,86 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelation (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelation

    +
    +
    Packages that use CMRelation
    + +
    + +
    +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/class-use/CMRelationMetric.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/class-use/CMRelationMetric.html new file mode 100644 index 0000000000..c605331c58 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/class-use/CMRelationMetric.html @@ -0,0 +1,61 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric

    +
    +No usage of de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-summary.html new file mode 100644 index 0000000000..88b092de73 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-summary.html @@ -0,0 +1,107 @@ + + + + +de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Package de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation

    +
    +
    +
    package de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation
    +
    + +
    +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-tree.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-tree.html new file mode 100644 index 0000000000..4419c630f2 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-tree.html @@ -0,0 +1,80 @@ + + + + +de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation Class Hierarchy (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Hierarchy For Package de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation

    +Package Hierarchies: + +
    +
    +

    Class Hierarchy

    +
      +
    • java.lang.Object +
        +
      • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelation
      • +
      • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.Metric<MetricResult> +
          +
        • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
        • +
        +
      • +
      +
    • +
    +
    +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-use.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-use.html new file mode 100644 index 0000000000..0f759b0f3a --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/cmrelation/package-use.html @@ -0,0 +1,83 @@ + + + + +Uses of Package de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Package
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation

    +
    + + +
    + +
    +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/package-summary.html index 390450c4c8..607a6dbc19 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/package-summary.html @@ -78,15 +78,11 @@

     

     
    - +
     
    - +
     
    - -
     
    - -
     
    - +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/package-use.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/package-use.html index 785d37290c..ab2a3c0f5c 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/package-use.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/package-use.html @@ -58,8 +58,10 @@

     

     
    - +
     
    + +
     
    + +
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/ranking/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/ranking/package-summary.html index 91b5962643..c444878bfb 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/ranking/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/ranking/package-summary.html @@ -78,8 +78,10 @@

     

     
    - +
     
    + +
     
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/resultsSimilarity/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/resultsSimilarity/package-summary.html index cb3a86cea9..59260ab171 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/resultsSimilarity/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/metric/resultsSimilarity/package-summary.html @@ -78,8 +78,10 @@

     

     
    - +
     
    + +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/package-summary.html index aec23902a2..68418b9adc 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/package-summary.html @@ -122,6 +122,8 @@

    An evaluator that calculates rank metrics on an per-element basis for each element of a specified source ontology.

    + +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/package-tree.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/package-tree.html index 5b7853c17a..b6e541edb3 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/package-tree.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/evaluator/package-tree.html @@ -68,6 +68,7 @@

    Class Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorPipeline
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRank
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRankGroup
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/package-use.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/package-use.html index 4a53a6d2d1..44801c345a 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/package-use.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_eval/package-use.html @@ -64,26 +64,28 @@

     

     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    - +
     
    + +
     
    -
    This filter removes correspondences where the source or target has not the same host of the OntModels.
    +
    This filter removes correspondences where the source or target is a blank node.
    class 
    @@ -493,6 +493,16 @@

    Uses of Class

    Description
    class 
    +
    +
    +
    Adds the provided extensions to the alignment when the matcher is executed.
    +
    +
    class 
    + +
    +
    This is a simple matcher that adds a given alignment to the inputAlignment.
    +
    +
    class 
    Adds an additional confidence by a user chosen function which gets a ontResource and has to return a double.
    @@ -737,43 +747,53 @@

    Uses of Class

    Description
    class 
    -
    +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target.
    class 
    - +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter asks a LLM if a given correspondence is correct or not.
    class 
    - +
    -
    This is a base class for all Transformers.
    +
    This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment).
    class 
    - +
    -
    This is a base class for all Transformers fine tuners.
    +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    class 
    - +
    -
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    class 
    - +
    -
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    This is a base class for all Transformers.
    class 
    - -
     
    + +
    +
    This is a base class for all Transformers fine tuners.
    +
    class 
    - +
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    +
    This filter extracts the corresponding text for a resource (with the specified and customizable extractor) given all correspondences in the input alignment.
    +
    class 
    + +
    +
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    +
    class 
    + +
     

    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/ResourcesExtractor.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/ResourcesExtractor.html index f0db1c4858..b17a9ad2d7 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/ResourcesExtractor.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/ResourcesExtractor.html @@ -129,18 +129,6 @@

    Uses of SentenceTransformersMatcher.getResourcesExtractor()

     
    - -
    -
    Modifier and Type
    -
    Method
    -
    Description
    -
    private int
    -
    SentenceTransformersMatcher.createTextFile(org.apache.jena.ontology.OntModel model, - File file, - ResourcesExtractor extractor, - Properties parameters)
    -
     
    -
    Modifier and Type
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/TextExtractor.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/TextExtractor.html index e9667d4071..97335e2583 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/TextExtractor.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/TextExtractor.html @@ -381,45 +381,62 @@

    Uses of TransformersFineTuner.

    class 
    - +
    +
    Extracts a label for the given resource and also creates a text for the superclass such that more context is provided.
    +
    +
    class 
    + +
    Extracts all values from specific properties as long as it is a literal.
    +
    class 
    + +
    +
    Extracts only one speaking label (language can be set in constructor) which can be (in decreasing importance): + skos:prefLabel, rdfs:label, fragment (only if more than 50 percent are not numbers), skos:altLabel, skos:hiddenLabel.
    +
    class 
    Extracts all values from a specific property as long as it is a literal.
    class 
    - -
    -
    A TextExtractor which extracts texts from a resource which can be used by transformer - based matchers like TransformersFilter - or TransformersFineTuner.
    -
    + +
     
    class 
    - +
    A TextExtractor which extracts texts from a resource which can be used by transformer based matchers like TransformersFilter or TransformersFineTuner.
    class 
    - +
    -
    Extracts the fragment of the URL, e.g.
    +
    A TextExtractor which extracts texts from a resource which can be used by transformer + based matchers like TransformersFilter + or TransformersFineTuner.
    class 
    - +
    -
    Extracts the local name from the URI.
    +
    Extracts the fragment of the URL, e.g.
    class 
    - +
    +
    Extracts the local name from the URI.
    +
    +
    class 
    + +
    A text textractor which extracts texts from a resource which can be used by transformer based matchers like TransformersFilter or TransformersFilterFineTuner.
    +
    class 
    + +
     
    @@ -508,47 +525,68 @@

    Uses of Constructor

    Description
     
    -
    SentenceTransformersFineTuner(TextExtractor extractor, - String initialModelName, - File resultingModelLocation)
    +
    LLMBase(TextExtractor extractor, + String modelName, + String promt)
    -
    Run the training of a NLP sentence transformers.
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
     
    - -
     
    +
    LLMBinaryFilter(TextExtractor extractor, + String modelName, + String promt)
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
     
    -
    TransformersBase(TextExtractor extractor, - String modelName)
    +
    LLMChooseGivenEntityFilter(TextExtractor extractor, + String modelName, + String promt)
    -
    Constructor with all required parameters.
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
     
    -
    TransformersBaseFineTuner(TextExtractor extractor, +
    SentenceTransformersFineTuner(TextExtractor extractor, String initialModelName, File resultingModelLocation)
    -
    Run the training of a NLP transformer.
    +
    Run the training of a NLP sentence transformers.
     
    -
    TransformersFilter(TextExtractor extractor, + +
     
    +
     
    +
    TransformersBase(TextExtractor extractor, String modelName)
    +
    +
    Constructor with all required parameters.
    +
    +
     
    +
    TransformersBaseFineTuner(TextExtractor extractor, + String initialModelName, + File resultingModelLocation)
    -
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    Run the training of a NLP transformer.
     
    -
    TransformersFineTuner(TextExtractor extractor, +
    TransformersFilter(TextExtractor extractor, + String modelName)
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    +
     
    +
    TransformersFineTuner(TextExtractor extractor, String initialModelName, File resultingModelLocation)
    -
    +
    Run the training of a NLP transformer.
    -
     
    -
    TransformersFineTunerHpSearch(TextExtractor extractor, +
     
    +
    TransformersFineTunerHpSearch(TextExtractor extractor, String initialModelName, File resultingModelLocation)
    -
     
    +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/TextExtractorMap.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/TextExtractorMap.html index eb39bcece5..895efe9b40 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/TextExtractorMap.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena/class-use/TextExtractorMap.html @@ -157,47 +157,68 @@

    Uses of Constructor

    Description
     
    -
    SentenceTransformersFineTuner(TextExtractorMap extractor, - String initialModelName, - File resultingModelLocation)
    +
    LLMBase(TextExtractorMap extractor, + String modelName, + String promt)
    -
    Run the training of a NLP sentence transformers.
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
     
    - -
     
    +
    LLMBinaryFilter(TextExtractorMap extractor, + String modelName, + String promt)
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
     
    -
    TransformersBase(TextExtractorMap extractor, - String modelName)
    +
    LLMChooseGivenEntityFilter(TextExtractorMap extractor, + String modelName, + String promt)
    -
    Constructor with all required parameters.
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
     
    -
    TransformersBaseFineTuner(TextExtractorMap extractor, +
    SentenceTransformersFineTuner(TextExtractorMap extractor, String initialModelName, File resultingModelLocation)
    -
    Run the training of a NLP transformer.
    +
    Run the training of a NLP sentence transformers.
     
    -
    TransformersFilter(TextExtractorMap extractor, + +
     
    +
     
    +
    TransformersBase(TextExtractorMap extractor, String modelName)
    +
    +
    Constructor with all required parameters.
    +
    +
     
    +
    TransformersBaseFineTuner(TextExtractorMap extractor, + String initialModelName, + File resultingModelLocation)
    -
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    Run the training of a NLP transformer.
     
    -
    TransformersFineTuner(TextExtractorMap extractor, +
    TransformersFilter(TextExtractorMap extractor, + String modelName)
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    +
     
    +
    TransformersFineTuner(TextExtractorMap extractor, String initialModelName, File resultingModelLocation)
    -
    +
    Run the training of a NLP transformer.
    -
     
    -
    TransformersFineTunerHpSearch(TextExtractorMap extractor, +
     
    +
    TransformersFineTunerHpSearch(TextExtractorMap extractor, String initialModelName, File resultingModelLocation)
    -
     
    +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/AnonymousNodeFilter.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/AnonymousNodeFilter.html index 5b7b4441f8..5c46321194 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/AnonymousNodeFilter.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/AnonymousNodeFilter.html @@ -93,8 +93,7 @@

    Class AnonymousNodeFilterpublic class AnonymousNodeFilter extends MatcherYAAAJena implements Filter

    -
    This filter removes correspondences where the source or target has not the same host of the OntModels. - E.g. it removes rdf:type=rdf:type or foaf:knows=foaf:knows
    +
    This filter removes correspondences where the source or target is a blank node.
      diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/BadHostsFilter.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/BadHostsFilter.html index 8733a1f33e..a83a9e9b3d 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/BadHostsFilter.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/BadHostsFilter.html @@ -107,14 +107,19 @@

      Field Summary

      Modifier and Type
      Field
      Description
      -
      private static final org.slf4j.Logger
      - +
      private Function<org.apache.jena.ontology.OntModel,String>
      +
      -
      Default logger
      +
      the function to extract the host URI of a model.
      -
      private boolean
      - +
      private static final org.slf4j.Logger
      +
      +
      Default logger
      +
      +
      private boolean
      + +
      if true, filter all correspondences where the host can not be determined
    @@ -139,6 +144,11 @@

    Constructor Summary

    Constructor
    +
    BadHostsFilter(boolean strict, + Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction)
    +
    +
    Constructor
    +
    @@ -154,18 +164,35 @@

    Method Summary

    Method
    Description
    static Alignment
    -
    filter(org.apache.jena.ontology.OntModel source, +
    filter(String expectedSourceHost, + String expectedTargetHost, + Alignment inputAlignment, + boolean strict)
    +
    +
    Filters the alignment based on similar hosts.
    +
    +
    static Alignment
    +
    filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
    -
    +
    Filters the alignment based on similar hosts in a non strict mode (if the host of source or target in a correspondence can not be determined, then the correspondence is added to the filtered alignment).
    -
    static Alignment
    -
    filter(org.apache.jena.ontology.OntModel source, +
    static Alignment
    +
    filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, boolean strict)
    +
    +
    Filters the alignment based on similar hosts.
    +
    +
    static Alignment
    +
    filter(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + boolean strict, + Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction)
    Filters the alignment based on similar hosts.
    @@ -174,6 +201,30 @@

    Method Summary

     
    static String
    getHostURIOfModel(org.apache.jena.ontology.OntModel m)
    +
    +
    Extracts the host URI of the model.
    +
    +
    static String
    +
    getHostURIOfModelByFullAnalysis(org.apache.jena.ontology.OntModel m)
    +
     
    +
    static String
    +
    getHostURIOfModelByPrefixOrFirstURI(org.apache.jena.ontology.OntModel m)
    +
    +
    Extracts the host URI of the model by using the prefix of :.
    +
    +
    static String
    +
    getHostURIOfModelBySampling(org.apache.jena.ontology.OntModel m)
    +
     
    +
    static String
    +
    getHostURIOfModelBySampling(org.apache.jena.ontology.OntModel m, + int sampleSize)
    +
     
    +
    private static List<String>
    +
    getURIHosts(Iterator<? extends org.apache.jena.ontology.OntResource> i)
    +
     
    +
    private static List<String>
    +
    getURIHostSample(Iterator<? extends org.apache.jena.ontology.OntResource> i, + int sampleSize)
     
    match(org.apache.jena.ontology.OntModel source, @@ -233,6 +284,13 @@

    strict

    if true, filter all correspondences where the host can not be determined
    +
  • +
    +

    hostOfModelFunction

    +
    private Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction
    +
    the function to extract the host URI of a model. Possibilities: BadHostsFilter::getHostURIOfModel, BadHostsFilter::getHostURIOfModelBySampling etc.
    +
    +
  • @@ -261,6 +319,20 @@

    BadHostsFilter

    +
  • +
    +

    BadHostsFilter

    +
    public BadHostsFilter(boolean strict, + Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction)
    +
    Constructor
    +
    +
    Parameters:
    +
    strict - if true, filter all correspondences where the host can not be determined. + If false, also include correspondences where the host could not be determined.
    +
    hostOfModelFunction - the function to extract the host URI of a model. Possibilities: BadHostsFilter::getHostURIOfModel, BadHostsFilter::getHostURIOfModelBySampling etc.
    +
    +
    +
  • @@ -338,6 +410,46 @@

    filter

  • +
    +

    filter

    +
    public static Alignment filter(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + boolean strict, + Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction)
    +
    Filters the alignment based on similar hosts.
    +
    +
    Parameters:
    +
    source - the source ontology
    +
    target - the target ontology
    +
    inputAlignment - the alignment to be filtered
    +
    strict - if true, filter all correspondences where the host can not be determined
    +
    hostOfModelFunction - the function to extract the host URI of a model. Possibilities: BadHostsFilter::getHostURIOfModel, BadHostsFilter::getHostURIOfModelBySampling etc.
    +
    Returns:
    +
    the filtered alignment.
    +
    +
    +
  • +
  • +
    +

    filter

    +
    public static Alignment filter(String expectedSourceHost, + String expectedTargetHost, + Alignment inputAlignment, + boolean strict)
    +
    Filters the alignment based on similar hosts.
    +
    +
    Parameters:
    +
    expectedSourceHost - the expected source host (can be extracted from an ontModel with getHostURIOfModel).
    +
    expectedTargetHost - the expected target host (can be extracted from an ontModel with getHostURIOfModel).
    +
    inputAlignment - the alignment to be filtered
    +
    strict - if true, filter all correspondences where the host can not be determined
    +
    Returns:
    +
    the filtered alignment.
    +
    +
    +
  • +
  • getHostOfURI

    public static String getHostOfURI(String uri)
    @@ -347,6 +459,60 @@

    getHostOfURI

    getHostURIOfModel

    public static String getHostURIOfModel(org.apache.jena.ontology.OntModel m)
    +
    Extracts the host URI of the model. + This implementation defaults to getHostURIOfModelByPrefixOrFirstURI(org.apache.jena.ontology.OntModel).
    +
    +
    Parameters:
    +
    m - the model
    +
    Returns:
    +
    the hostURI of most resources in this model.
    +
    +
    +
  • +
  • +
    +

    getHostURIOfModelByPrefixOrFirstURI

    +
    public static String getHostURIOfModelByPrefixOrFirstURI(org.apache.jena.ontology.OntModel m)
    +
    Extracts the host URI of the model by using the prefix of :. + Or search for the first class and extracts the host of this URL.
    +
    +
    Parameters:
    +
    m - the model
    +
    Returns:
    +
    the hostURI of prefix or first URI in this model.
    +
    +
    +
  • +
  • +
    +

    getHostURIOfModelBySampling

    +
    public static String getHostURIOfModelBySampling(org.apache.jena.ontology.OntModel m)
    +
    +
  • +
  • +
    +

    getHostURIOfModelBySampling

    +
    public static String getHostURIOfModelBySampling(org.apache.jena.ontology.OntModel m, + int sampleSize)
    +
    +
  • +
  • +
    +

    getURIHostSample

    +
    private static List<String> getURIHostSample(Iterator<? extends org.apache.jena.ontology.OntResource> i, + int sampleSize)
    +
    +
  • +
  • +
    +

    getHostURIOfModelByFullAnalysis

    +
    public static String getHostURIOfModelByFullAnalysis(org.apache.jena.ontology.OntModel m)
    +
    +
  • +
  • +
    +

    getURIHosts

    +
    private static List<String> getURIHosts(Iterator<? extends org.apache.jena.ontology.OntResource> i)
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/package-summary.html index 578c51735c..44d516c35a 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/filter/package-summary.html @@ -96,7 +96,7 @@

    AnonymousNodeFilter

    -
    This filter removes correspondences where the source or target has not the same host of the OntModels.
    +
    This filter removes correspondences where the source or target is a blank node.
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentExtensions.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentExtensions.html new file mode 100644 index 0000000000..2a719819d8 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentExtensions.html @@ -0,0 +1,291 @@ + + + + +AddAlignmentExtensions (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + + + +
    +
    +
    All Implemented Interfaces:
    +
    IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>, eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge, eu.sealsproject.platform.res.tool.api.IPlugin, eu.sealsproject.platform.res.tool.api.IToolBridge
    +
    +
    +
    public class AddAlignmentExtensions +extends MatcherYAAAJena
    +
    Adds the provided extensions to the alignment when the matcher is executed.
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        LOGGER

        +
        private static final org.slf4j.Logger LOGGER
        +
        +
      • +
      • +
        +

        extensions

        +
        private Map<Object,Object> extensions
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        AddAlignmentExtensions

        +
        public AddAlignmentExtensions(Map<Object,Object> extensions)
        +
        +
      • +
      • +
        +

        AddAlignmentExtensions

        +
        public AddAlignmentExtensions(Object... extensions)
        +
        List the Extensions as key1, value1, key2, value2 etc.
        +
        +
        Parameters:
        +
        extensions - extensions in key1, value1, key2, value2, ... format
        +
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        match

        +
        public Alignment match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties) + throws Exception
        +
        Description copied from class: MatcherYAAAJena
        +
        Aligns two ontologies specified via a Jena OntModel, with an input alignment + as Alignment object, and returns the mapping of the resulting alignment. + + Note: This method might be called multiple times in a row when using the evaluation framework. + Make sure to return a mapping which is specific to the given inputs.
        +
        +
        Specified by:
        +
        match in interface IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>
        +
        Specified by:
        +
        match in class MatcherYAAAJena
        +
        Parameters:
        +
        source - This OntModel represents the source ontology.
        +
        target - This OntModel represents the target ontology.
        +
        inputAlignment - This mapping represents the input alignment.
        +
        properties - Additional properties.
        +
        Returns:
        +
        The resulting alignment of the matching process.
        +
        Throws:
        +
        Exception - Any exception which occurs during matching.
        +
        +
        +
      • +
      • +
        +

        parseExtensions

        +
        private static Map<Object,Object> parseExtensions(Object[] arr)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentMatcher.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentMatcher.html new file mode 100644 index 0000000000..883e7c60ca --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/AddAlignmentMatcher.html @@ -0,0 +1,321 @@ + + + + +AddAlignmentMatcher (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + + + +
    +
    +
    All Implemented Interfaces:
    +
    IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>, eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge, eu.sealsproject.platform.res.tool.api.IPlugin, eu.sealsproject.platform.res.tool.api.IToolBridge
    +
    +
    +
    public class AddAlignmentMatcher +extends MatcherYAAAJena
    +
    This is a simple matcher that adds a given alignment to the inputAlignment. + The given alignemnt has advantage.
    +
    +
    +
      + +
    • +
      +

      Field Summary

      +
      Fields
      +
      +
      Modifier and Type
      +
      Field
      +
      Description
      + + +
      +
      Alignment to be added.
      +
      +
      private static final org.slf4j.Logger
      + +
       
      +
      +
      +

      Fields inherited from class de.uni_mannheim.informatik.dws.melt.matching_base.MatcherFile

      +FILE_PREFIX, FILE_SUFFIX
      +
      +
    • + +
    • +
      +

      Constructor Summary

      +
      Constructors
      +
      +
      Constructor
      +
      Description
      + +
      +
      Constructor + Alignment to be forwarded must be given in match operation.
      +
      +
      AddAlignmentMatcher(Alignment alignmentToBeUsed)
      +
      +
      Constructor
      +
      +
      AddAlignmentMatcher(File fileToLoadAlignmentFrom)
      +
      +
      Constructor
      +
      +
      AddAlignmentMatcher(String filePathToLoadAlignmentFrom)
      +
      +
      Constructor
      +
      +
      +
      +
    • + +
    • +
      +

      Method Summary

      +
      +
      +
      +
      +
      Modifier and Type
      +
      Method
      +
      Description
      + +
      match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties)
      +
      +
      Aligns two ontologies specified via a Jena OntModel, with an input alignment + as Alignment object, and returns the mapping of the resulting alignment.
      +
      +
      +
      +
      +
      +

      Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena

      +getModelSpec, match, readOntology
      +
      +

      Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAA

      +match
      +
      +

      Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_base.MatcherFile

      +match
      +
      +

      Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_base.MatcherURL

      +align, align, canExecute, getType
      +
      +

      Methods inherited from class eu.sealsproject.platform.res.tool.impl.AbstractPlugin

      +getId, getVersion, setId, setVersion
      +
      +

      Methods inherited from class java.lang.Object

      +clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
      +
      +

      Methods inherited from interface eu.sealsproject.platform.res.tool.api.IPlugin

      +getId, getVersion
      +
      +
    • +
    +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        alignmentToBeUsed

        +
        public Alignment alignmentToBeUsed
        +
        Alignment to be added.
        +
        +
      • +
      • +
        +

        LOGGER

        +
        private static final org.slf4j.Logger LOGGER
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        AddAlignmentMatcher

        +
        public AddAlignmentMatcher()
        +
        Constructor + Alignment to be forwarded must be given in match operation.
        +
        +
      • +
      • +
        +

        AddAlignmentMatcher

        +
        public AddAlignmentMatcher(File fileToLoadAlignmentFrom)
        +
        Constructor
        +
        +
        Parameters:
        +
        fileToLoadAlignmentFrom - Alignment file.
        +
        +
        +
      • +
      • +
        +

        AddAlignmentMatcher

        +
        public AddAlignmentMatcher(String filePathToLoadAlignmentFrom)
        +
        Constructor
        +
        +
        Parameters:
        +
        filePathToLoadAlignmentFrom - Alignment file path.
        +
        +
        +
      • +
      • +
        +

        AddAlignmentMatcher

        +
        public AddAlignmentMatcher(Alignment alignmentToBeUsed)
        +
        Constructor
        +
        +
        Parameters:
        +
        alignmentToBeUsed - The alignment to be forwarded.
        +
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        match

        +
        public Alignment match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties) + throws Exception
        +
        Description copied from class: MatcherYAAAJena
        +
        Aligns two ontologies specified via a Jena OntModel, with an input alignment + as Alignment object, and returns the mapping of the resulting alignment. + + Note: This method might be called multiple times in a row when using the evaluation framework. + Make sure to return a mapping which is specific to the given inputs.
        +
        +
        Specified by:
        +
        match in interface IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>
        +
        Specified by:
        +
        match in class MatcherYAAAJena
        +
        Parameters:
        +
        source - This OntModel represents the source ontology.
        +
        target - This OntModel represents the target ontology.
        +
        inputAlignment - This mapping represents the input alignment.
        +
        properties - Additional properties.
        +
        Returns:
        +
        The resulting alignment of the matching process.
        +
        Throws:
        +
        Exception - Any exception which occurs during matching.
        +
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/class-use/AddAlignmentExtensions.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/class-use/AddAlignmentExtensions.html new file mode 100644 index 0000000000..12e769595f --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/class-use/AddAlignmentExtensions.html @@ -0,0 +1,61 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions

    +
    +No usage of de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/class-use/AddAlignmentMatcher.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/class-use/AddAlignmentMatcher.html new file mode 100644 index 0000000000..b600f88eda --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/class-use/AddAlignmentMatcher.html @@ -0,0 +1,61 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher

    +
    +No usage of de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/package-summary.html index 1d03da8ab4..b120ca4397 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/package-summary.html @@ -68,6 +68,14 @@

    Class
    Description
    + +
    +
    Adds the provided extensions to the alignment when the matcher is executed.
    +
    + +
    +
    This is a simple matcher that adds a given alignment to the inputAlignment.
    +
    Adds an additional confidence by a user chosen function which gets a ontResource and has to return a double.
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/package-tree.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/package-tree.html index 6dbd656904..b2c301a038 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/package-tree.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/metalevel/package-tree.html @@ -69,6 +69,8 @@

    Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena (implements de.uni_mannheim.informatik.dws.melt.matching_base.IMatcher<ModelClass,AlignmentClass,ParameterClass>)
        +
      • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
      • +
      • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
      • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AdditionalConfidenceByFunction
      • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AlignmentSaveMatcher
      • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.ConfidenceCombiner (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
      • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/Counter.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/Counter.html index 101802e5d7..679b7ef651 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/Counter.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/Counter.html @@ -370,6 +370,11 @@

        Method Summary

        ToString method which returns return values from functions like mostCommon(int) well formatted in multiple lines to have a better overview.
        + + +
        +
        ToString method which returns the given entries well formatted in multiple lines.
        +

    @@ -898,6 +903,19 @@

    toString

  • +
    +

    toStringMultiline

    +
    public String toStringMultiline(Collection<Map.Entry<T,Double>> entries)
    +
    ToString method which returns the given entries well formatted in multiple lines.
    +
    +
    Parameters:
    +
    entries - the values which should be nicely formatted
    +
    Returns:
    +
    a string which contains the entries information in multiple lines.
    +
    +
    +
  • +
  • toStringMultiline

    public String toStringMultiline()
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/StringProcessing.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/StringProcessing.html index 2dbe9ea248..8a9b972e60 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/StringProcessing.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/StringProcessing.html @@ -148,9 +148,12 @@

    Method Summary

    static String
     
    -
    private static String[]
    -
    normalizeToStringArray(String stringToBeNormalized)
    +
    static String
    +
     
    +
    private static String[]
    +
    normalizeToStringArray(String stringToBeNormalized)
    +
     
  • @@ -264,6 +267,12 @@

    normalizeOnlyCamelCaseAndUnderscore

    public static String normalizeOnlyCamelCaseAndUnderscore(String stringToBeNormalized)
    +
  • +
    +

    normalizeOnlyCamelCaseUnderscoreAndHyphen

    +
    public static String normalizeOnlyCamelCaseUnderscoreAndHyphen(String stringToBeNormalized)
    +
    +
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/graph/CycleDetection.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/graph/CycleDetection.html index c284821053..5d9d0adda9 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/graph/CycleDetection.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/graph/CycleDetection.html @@ -156,16 +156,21 @@

    Method Summary

     
    -
    private List<T>
    - -
     
    -
    static <T extends Comparable<T>>
    List<List<T>>
    - -
     
    -
    void
    -
    removeEdge(T source, + + +
    +
    Return the graph which is generated by calling addEdge(T, T) or removeEdge(T, T).
    +
    +
    private List<T>
    + +
     
    +
    static <T extends Comparable<T>>
    List<List<T>>
    + +
     
    +
    void
    +
    removeEdge(T source, T target)
    -
     
    +
     
    @@ -245,6 +250,17 @@

    removeEdge

  • +
    +

    getGraph

    +
    public Map<T,Set<T>> getGraph()
    +
    Return the graph which is generated by calling addEdge(T, T) or removeEdge(T, T).
    +
    +
    Returns:
    +
    the graph as a map from source to possibly multiple targets
    +
    +
    +
  • +
  • getAllNodes

    private Set<T> getAllNodes()
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/graph/DotGraphUtil.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/graph/DotGraphUtil.html index 3a77312190..5007f896cb 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/graph/DotGraphUtil.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/graph/DotGraphUtil.html @@ -127,25 +127,39 @@

    Method Summary

     
    static <T> void
    - +
    renderFile(File dotFile, + File imageFile, + String dotCommand, + String type)
     
    static <T> void
    -
    writeDirectedGraphToDotFile(File dotFile, +
    renderFilePng(File dotFile, + File imageFile)
    +
     
    +
    static <T> void
    +
    renderGraph(Map<T,Set<T>> edges, + File imageFile)
    +
     
    +
    static <T> void
    + +
     
    +
    static <T> void
    +
    writeDirectedGraphToDotFile(File dotFile, List<Map.Entry<T,T>> edges, Function<T,String> nodeToId, String... graphAttributes)
    -
     
    -
    static <T> void
    -
    writeDirectedGraphToDotFile(File dotFile, - Map<T,Set<T>> edges)
     
    static <T> void
    -
    writeDirectedGraphToDotFile(File dotFile, +
    writeDirectedGraphToDotFile(File dotFile, + Map<T,Set<T>> edges)
    +
     
    +
    static <T> void
    +
    writeDirectedGraphToDotFile(File dotFile, Map<T,Set<T>> edges, Function<T,String> nodeToId, String... graphAttributes)
    -
     
    +
     
  • @@ -224,6 +238,39 @@

    writeDirectedGraphToDotFile

  • +
    +

    renderGraph

    +
    public static <T> void renderGraph(Map<T,Set<T>> edges, + File imageFile)
    +
    +
  • +
  • +
    +

    renderFilePng

    +
    public static <T> void renderFilePng(File dotFile, + File imageFile) + throws IOException
    +
    +
    Throws:
    +
    IOException
    +
    +
    +
  • +
  • +
    +

    renderFile

    +
    public static <T> void renderFile(File dotFile, + File imageFile, + String dotCommand, + String type) + throws IOException
    +
    +
    Throws:
    +
    IOException
    +
    +
    +
  • +
  • makeQuotedNodeID

    public static String makeQuotedNodeID(String nodeId)
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorLabelAndDirectSuperclass.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorLabelAndDirectSuperclass.html new file mode 100644 index 0000000000..0acf958ec9 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorLabelAndDirectSuperclass.html @@ -0,0 +1,273 @@ + + + + +TextExtractorLabelAndDirectSuperclass (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + +
    + +

    Class TextExtractorLabelAndDirectSuperclass

    +
    +
    java.lang.Object +
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
    +
    +
    +
    All Implemented Interfaces:
    +
    TextExtractor
    +
    +
    +
    public class TextExtractorLabelAndDirectSuperclass +extends Object +implements TextExtractor
    +
    Extracts a label for the given resource and also creates a text for the superclass such that more context is provided.
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        labelExtractor

        +
        private final TextExtractorOnlyLabel labelExtractor
        +
        +
      • +
      • +
        +

        subClassText

        +
        private final String subClassText
        +
        +
      • +
      • +
        +

        includeQuotes

        +
        private final boolean includeQuotes
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        TextExtractorLabelAndDirectSuperclass

        +
        public TextExtractorLabelAndDirectSuperclass(String subClassText, + boolean includeQuotes)
        +
        +
      • +
      • +
        +

        TextExtractorLabelAndDirectSuperclass

        +
        public TextExtractorLabelAndDirectSuperclass()
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        extract

        +
        public Set<String> extract(org.apache.jena.rdf.model.Resource r)
        +
        Description copied from interface: TextExtractor
        +
        Given a Jena resource this method extracts textual/string representations from it.
        +
        +
        Specified by:
        +
        extract in interface TextExtractor
        +
        Parameters:
        +
        r - the jena resource which also allows to traverse the whole rdf graph
        +
        Returns:
        +
        a set of textual representations of the given resource.
        +
        +
        +
      • +
      • +
        +

        getSuperclassLabels

        +
        protected Set<String> getSuperclassLabels(org.apache.jena.rdf.model.Resource r)
        +
        Returns for each superclass at maximum one label. If a label for a super class cannot be extracted, it will also not be in the set.
        +
        +
        Parameters:
        +
        r - the resource to extract the superclass labels
        +
        Returns:
        +
        the superclass labels
        +
        +
        +
      • +
      • +
        +

        optionallyQuote

        +
        protected String optionallyQuote(String text)
        +
        +
      • +
      • +
        +

        optionallyQuote

        +
        protected Set<String> optionallyQuote(Set<String> texts)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorOnlyLabel.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorOnlyLabel.html new file mode 100644 index 0000000000..c7822723c8 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorOnlyLabel.html @@ -0,0 +1,266 @@ + + + + +TextExtractorOnlyLabel (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + + +
    java.lang.Object +
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
    +
    +
    +
    All Implemented Interfaces:
    +
    TextExtractor
    +
    +
    +
    public class TextExtractorOnlyLabel +extends Object +implements TextExtractor
    +
    Extracts only one speaking label (language can be set in constructor) which can be (in decreasing importance): + skos:prefLabel, rdfs:label, fragment (only if more than 50 percent are not numbers), skos:altLabel, skos:hiddenLabel.
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        languageCode

        +
        protected String languageCode
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        TextExtractorOnlyLabel

        +
        public TextExtractorOnlyLabel()
        +
        +
      • +
      • +
        +

        TextExtractorOnlyLabel

        +
        public TextExtractorOnlyLabel(String languageCode)
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        extract

        +
        public Set<String> extract(org.apache.jena.rdf.model.Resource r)
        +
        Description copied from interface: TextExtractor
        +
        Given a Jena resource this method extracts textual/string representations from it.
        +
        +
        Specified by:
        +
        extract in interface TextExtractor
        +
        Parameters:
        +
        r - the jena resource which also allows to traverse the whole rdf graph
        +
        Returns:
        +
        a set of textual representations of the given resource.
        +
        +
        +
      • +
      • +
        +

        extractOne

        +
        public String extractOne(org.apache.jena.rdf.model.Resource r)
        +
        +
      • +
      • +
        +

        extractProperty

        +
        protected String extractProperty(org.apache.jena.rdf.model.Resource r, + org.apache.jena.rdf.model.Property p)
        +
        Extract literal if language tag fits or (as fallback) literal with no language tag.
        +
        +
        Parameters:
        +
        r - the resource
        +
        p - the property to analyze
        +
        Returns:
        +
        the extracted lexical form of the literal or empty string (if no literal matches or is provided).
        +
        +
        +
      • +
      • +
        +

        langTagMatch

        +
        protected boolean langTagMatch(String target)
        +
        +
      • +
      • +
        +

        extractFragment

        +
        public static String extractFragment(org.apache.jena.rdf.model.Resource r)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorResourceDescriptionInRDF.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorResourceDescriptionInRDF.html new file mode 100644 index 0000000000..57944b8cc1 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorResourceDescriptionInRDF.html @@ -0,0 +1,429 @@ + + + + +TextExtractorResourceDescriptionInRDF (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + +
    + +

    Class TextExtractorResourceDescriptionInRDF

    +
    +
    java.lang.Object +
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
    +
    +
    +
    All Implemented Interfaces:
    +
    TextExtractor
    +
    +
    +
    public class TextExtractorResourceDescriptionInRDF +extends Object +implements TextExtractor
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        LOGGER

        +
        private static final org.slf4j.Logger LOGGER
        +
        +
      • +
      • +
        +

        removeNewlines

        +
        protected boolean removeNewlines
        +
        +
      • +
      • +
        +

        useLabelInsteadOfResource

        +
        protected boolean useLabelInsteadOfResource
        +
        +
      • +
      • +
        +

        includePrefixesInModel

        +
        protected boolean includePrefixesInModel
        +
        +
      • +
      • +
        +

        removePrefixDefition

        +
        protected boolean removePrefixDefition
        +
        +
      • +
      • +
        +

        serializationFormat

        +
        protected org.apache.jena.riot.RDFFormat serializationFormat
        +
        The serialization format to use - more info at the corresponding jena page.
        +
        +
      • +
      • +
        +

        labelExtractor

        +
        private static final TextExtractorOnlyLabel labelExtractor
        +
        +
      • +
      • +
        +

        noPrefixLang

        +
        private static Set<org.apache.jena.riot.Lang> noPrefixLang
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        TextExtractorResourceDescriptionInRDF

        +
        public TextExtractorResourceDescriptionInRDF(boolean useLabelInsteadOfResource, + org.apache.jena.riot.RDFFormat serializationFormat)
        +
        +
      • +
      • +
        +

        TextExtractorResourceDescriptionInRDF

        +
        public TextExtractorResourceDescriptionInRDF(boolean useLabelInsteadOfResource)
        +
        +
      • +
      • +
        +

        TextExtractorResourceDescriptionInRDF

        +
        public TextExtractorResourceDescriptionInRDF()
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        extract

        +
        public Set<String> extract(org.apache.jena.rdf.model.Resource r)
        +
        Description copied from interface: TextExtractor
        +
        Given a Jena resource this method extracts textual/string representations from it.
        +
        +
        Specified by:
        +
        extract in interface TextExtractor
        +
        Parameters:
        +
        r - the jena resource which also allows to traverse the whole rdf graph
        +
        Returns:
        +
        a set of textual representations of the given resource.
        +
        +
        +
      • +
      • +
        +

        getModelWithResource

        +
        protected org.apache.jena.rdf.model.Model getModelWithResource(org.apache.jena.rdf.model.Resource r)
        +
        +
      • +
      • +
        +

        getModelWithLabel

        +
        protected org.apache.jena.rdf.model.Model getModelWithLabel(org.apache.jena.rdf.model.Resource r)
        +
        +
      • +
      • +
        +

        removeUnusedPrefixes

        +
        private org.apache.jena.rdf.model.Model removeUnusedPrefixes(org.apache.jena.rdf.model.Model m)
        +
        +
      • +
      • +
        +

        getPrefix

        +
        private String getPrefix(Map<String,String> map, + String uri)
        +
        +
      • +
      • +
        +

        createEmptyModel

        +
        private org.apache.jena.rdf.model.Model createEmptyModel(org.apache.jena.rdf.model.Resource r)
        +
        +
      • +
      • +
        +

        isRemoveNewlines

        +
        public boolean isRemoveNewlines()
        +
        +
      • +
      • +
        +

        setRemoveNewlines

        +
        public void setRemoveNewlines(boolean removeNewlines)
        +
        +
      • +
      • +
        +

        isUseLabelInsteadOfResource

        +
        public boolean isUseLabelInsteadOfResource()
        +
        +
      • +
      • +
        +

        setUseLabelInsteadOfResource

        +
        public void setUseLabelInsteadOfResource(boolean useLabelInsteadOfResource)
        +
        +
      • +
      • +
        +

        isIncludePrefixesInModel

        +
        public boolean isIncludePrefixesInModel()
        +
        +
      • +
      • +
        +

        setIncludePrefixesInModel

        +
        public void setIncludePrefixesInModel(boolean includePrefixesInModel)
        +
        +
      • +
      • +
        +

        isRemovePrefixDefition

        +
        public boolean isRemovePrefixDefition()
        +
        +
      • +
      • +
        +

        setRemovePrefixDefition

        +
        public void setRemovePrefixDefition(boolean removePrefixDefition)
        +
        +
      • +
      • +
        +

        getSerializationFormat

        +
        public org.apache.jena.riot.RDFFormat getSerializationFormat()
        +
        +
      • +
      • +
        +

        setSerializationFormat

        +
        public void setSerializationFormat(org.apache.jena.riot.RDFFormat serializationFormat)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorVerbalizedRDF.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorVerbalizedRDF.html new file mode 100644 index 0000000000..20b0bb016e --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/TextExtractorVerbalizedRDF.html @@ -0,0 +1,254 @@ + + + + +TextExtractorVerbalizedRDF (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + + +
    java.lang.Object +
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
    +
    +
    +
    All Implemented Interfaces:
    +
    TextExtractor
    +
    +
    +
    public class TextExtractorVerbalizedRDF +extends Object +implements TextExtractor
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        labelExtractor

        +
        private static final TextExtractorOnlyLabel labelExtractor
        +
        +
      • +
      • +
        +

        lineByLineTranslation

        +
        protected boolean lineByLineTranslation
        +
        +
      • +
      • +
        +

        includeQuotes

        +
        protected boolean includeQuotes
        +
        +
      • +
      • +
        +

        LABEL_PROPERTIES

        +
        private static Set<org.apache.jena.rdf.model.Property> LABEL_PROPERTIES
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        TextExtractorVerbalizedRDF

        +
        public TextExtractorVerbalizedRDF(boolean lineByLineTranslation, + boolean includeQuotes)
        +
        +
      • +
      • +
        +

        TextExtractorVerbalizedRDF

        +
        public TextExtractorVerbalizedRDF()
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        extract

        +
        public Set<String> extract(org.apache.jena.rdf.model.Resource r)
        +
        Description copied from interface: TextExtractor
        +
        Given a Jena resource this method extracts textual/string representations from it.
        +
        +
        Specified by:
        +
        extract in interface TextExtractor
        +
        Parameters:
        +
        r - the jena resource which also allows to traverse the whole rdf graph
        +
        Returns:
        +
        a set of textual representations of the given resource.
        +
        +
        +
      • +
      • +
        +

        optionallyQuote

        +
        protected String optionallyQuote(String text)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorLabelAndDirectSuperclass.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorLabelAndDirectSuperclass.html new file mode 100644 index 0000000000..4218b79bbb --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorLabelAndDirectSuperclass.html @@ -0,0 +1,61 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass

    +
    +No usage of de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorOnlyLabel.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorOnlyLabel.html new file mode 100644 index 0000000000..032849f102 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorOnlyLabel.html @@ -0,0 +1,92 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel

    +
    +
    Packages that use TextExtractorOnlyLabel
    + +
    + +
    +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorResourceDescriptionInRDF.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorResourceDescriptionInRDF.html new file mode 100644 index 0000000000..4454bcec10 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorResourceDescriptionInRDF.html @@ -0,0 +1,61 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF

    +
    +No usage of de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorVerbalizedRDF.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorVerbalizedRDF.html new file mode 100644 index 0000000000..bc4f873944 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/class-use/TextExtractorVerbalizedRDF.html @@ -0,0 +1,61 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF

    +
    +No usage of de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-summary.html index f38980261d..40afd8e8a5 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-summary.html @@ -128,39 +128,52 @@

    TransformersFilter or TransformersFineTuner.

  • - +
    +
    Extracts a label for the given resource and also creates a text for the superclass such that more context is provided.
    +
    + +
    Extracts all values from specific properties as long as it is a literal.
    + +
    +
    Extracts only one speaking label (language can be set in constructor) which can be (in decreasing importance): + skos:prefLabel, rdfs:label, fragment (only if more than 50 percent are not numbers), skos:altLabel, skos:hiddenLabel.
    +
    Extracts all values from a specific property as long as it is a literal.
    - -
    + +
     
    + +
    A TextExtractor which extracts texts from a resource which can be used by transformer based matchers like TransformersFilter or TransformersFineTuner.
    - -
    + +
    A TextExtractor which extracts texts from a resource which can be used by transformer based matchers like TransformersFilter or TransformersFineTuner.
    - -
    + +
    Extracts the fragment of the URL, e.g.
    - -
    + +
    Extracts the local name from the URI.
    - -
    + +
    A text textractor which extracts texts from a resource which can be used by transformer based matchers like TransformersFilter or TransformersFilterFineTuner.
    + +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-tree.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-tree.html index a89741ebcb..c047aedaeb 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-tree.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-tree.html @@ -67,13 +67,17 @@

    Class Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorAllStringLiterals (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorFallback (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorForTransformers (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorMultipleProperties (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorProperty (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorSet (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorShortAndLongTexts (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorUrlFragment (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorUrlLocalName (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorUseLongestLiteralOrFragment (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-use.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-use.html index 577309459e..82a0dbaee9 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-use.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_jena_matchers/util/textExtractors/package-use.html @@ -81,8 +81,13 @@

    This extractor uses all literals which are also strings e.g.

    - +
    +
    Extracts only one speaking label (language can be set in constructor) which can be (in decreasing importance): + skos:prefLabel, rdfs:label, fragment (only if more than 50 percent are not numbers), skos:altLabel, skos:hiddenLabel.
    +
    + +
    Extracts the fragment of the URL, e.g.
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/PythonServer.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/PythonServer.html index badff6424b..504719eefc 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/PythonServer.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/PythonServer.html @@ -255,185 +255,197 @@

    Method Summary

    Obtain the canonical model path.
    - - -
    -
    Get the instance.
    +
    private String
    + +
    +
    Obtain the canonical model path.
    -
    getInstance(File resourcesDirectory)
    +
    -
    Get the instance (singleton pattern).
    +
    Get the instance.
    -
    private String
    - -
     
    -
    static int
    - -
     
    -
    protected String
    - -
    -
    Returns a concatenated path of directories which can be used in the PATH variable.
    + +
    getInstance(File resourcesDirectory)
    +
    +
    Get the instance (singleton pattern).
    +
    private String
    + +
     
    +
    static int
    + +
     
    protected String
    - +
    +
    Returns a concatenated path of directories which can be used in the PATH variable.
    +
    +
    protected String
    + +
    Returns the python command which is extracted from file melt-resources/python_command.txt.
    - - -
     
    - - -
    + + +
     
    + + +
    Get the resource directory as String.
    -
    static String
    - -
     
    -
    double
    -
    getSimilarity(String concept1, +
    static String
    + +
     
    +
    double
    +
    getSimilarity(String concept1, String concept2, String modelOrVectorPath)
    -
    +
    Ge the similarity given 2 concepts and a gensim model.
    - -
    getVector(String concept, + +
    getVector(String concept, String modelOrVectorPath)
    -
    -
    Returns the vector of a concept.
    -
    -
    int
    -
    getVocabularySize(String modelOrVectorPath)
    -
    Returns the size of the vocabulary of the stated model/vector set.
    +
    Returns the vector of a concept.
    - -
    getVocabularyTerms(String modelOrVectorPath)
    +
    int
    +
    getVocabularySize(String modelOrVectorPath)
    -
    Returns the full vocabulary of the specified model as HashSet (e.g.
    +
    Returns the size of the vocabulary of the stated model/vector set.
    -
    boolean
    -
    isInVocabulary(String concept, - File modelOrVectorPath)
    + +
    getVocabularyTerms(String modelOrVectorPath)
    -
    Returns true when the concept can be found in the vocabulary of the model.
    +
    Returns the full vocabulary of the specified model as HashSet (e.g.
    boolean
    -
    isInVocabulary(String concept, - String modelOrVectorPath)
    +
    isInVocabulary(String concept, + File modelOrVectorPath)
    Returns true when the concept can be found in the vocabulary of the model.
    boolean
    - +
    isInVocabulary(String concept, + String modelOrVectorPath)
    +
    Returns true when the concept can be found in the vocabulary of the model.
    +
    +
    boolean
    + +
    If true: enabled.
    - -
    learnAndApplyMLModel(File trainFile, + +
    learnAndApplyMLModel(File trainFile, File predictFile, int cv, int jobs)
    -
    +
    Learn a ML model for a given training file.
    -
    private Alignment
    -
    parseJSON(String resultString)
    -
     
    -
    private void
    - -
    +
    private Alignment
    +
    parseJSON(String resultString)
    +
     
    +
    private void
    + +
    A quick technical demo.
    - -
    queryDoc2VecModel(String modelPath, + +
    queryDoc2VecModel(String modelPath, List<Correspondence> alignment)
    -
    +
    Method to query a doc2vec model (which has to be trained with trainDoc2VecModel) in a batch mode.
    - -
    queryVectorSpaceModel(String modelPath, + +
    queryVectorSpaceModel(String modelPath, Alignment alignment)
    -
    +
    Method to query a vector space model (which has to be trained with trainVectorSpaceModel) in a batch mode.
    -
    double
    -
    queryVectorSpaceModel(String modelPath, +
    double
    +
    queryVectorSpaceModel(String modelPath, String documentIdOne, String documentIdTwo)
    -
    +
    Method to query a vector space model (which has to be trained with trainVectorSpaceModel).
    - -
    queryVectorSpaceModel(String modelPath, + + -
    +
    Method to query a vector space model (which has to be trained with trainVectorSpaceModel) in a batch mode.
    - -
    runGroupShuffleSplit(List<Integer> groups, + +
    runGroupShuffleSplit(List<Integer> groups, double trainSize)
    -
     
    -
    void
    -
    runOpenEAModel(File argumentFile, +
     
    +
    void
    +
    runOpenEAModel(File argumentFile, boolean save)
    -
    +
    Run the openEA library.
    -
    private String
    -
    runRequest(org.apache.http.client.methods.HttpUriRequest request)
    -
     
    -
    float
    -
    sentenceTransformersFineTuning(SentenceTransformersFineTuner fineTuner, +
    private String
    +
    runRequest(org.apache.http.client.methods.HttpUriRequest request)
    +
     
    +
    float
    +
    sentenceTransformersFineTuning(SentenceTransformersFineTuner fineTuner, File trainingFile, File validationFile)
    -
    +
    Run fine tuning for sentence transformers.
    - -
    sentenceTransformersPrediction(SentenceTransformersMatcher matcher, + + -
    +
    Run sentence transformers prediction.
    -
    static void
    -
    setOverridePythonFiles(boolean overrideFiles)
    -
    +
    static void
    +
    setOverridePythonFiles(boolean overrideFiles)
    +
    If set to true, all python files (e.g.
    -
    static void
    -
    setPort(int port)
    -
     
    static void
    -
    setPythonCommandBackup(String pythonCommandBackup)
    -
    +
    setPort(int port)
    +
     
    +
    static void
    +
    setPythonCommandBackup(String pythonCommandBackup)
    +
    Sets the python command programmatically.
    -
    void
    -
    setResourcesDirectory(File resourcesDirectory)
    -
    -
    Set the directory where the python files will be copied to.
    -
    void
    -
    setVectorCaching(boolean vectorCaching)
    +
    setResourcesDirectory(File resourcesDirectory)
    +
    Set the directory where the python files will be copied to.
    +
    +
    void
    +
    setVectorCaching(boolean vectorCaching)
    +
    If vector caching is turned on, similarities will be calculated on Java site (rather than in Python) and vectors are held in memories.
    -
    static void
    - -
    +
    static void
    + +
    Shut down the service.
    -
    private boolean
    - -
    +
    private boolean
    + +
    Initializes the server.
    + +
    textGenerationPrediction(LLMBase filter, + File predictionFilePath, + List<Set<String>> wordsToDetect)
    +
    +
    Run text generation model (like a large language model llm) given a file with left and right value which are replaced .
    +
    void
    trainAndStoreMLModel(File trainFile, File modelFile, @@ -760,6 +772,28 @@

    transformersPrediction

  • +
    +

    textGenerationPrediction

    +
    public List<List<Double>> textGenerationPrediction(LLMBase filter, + File predictionFilePath, + List<Set<String>> wordsToDetect) + throws PythonServerException
    +
    Run text generation model (like a large language model llm) given a file with left and right value which are replaced . + Each line needs to be completed and the prediction for "yes" and "no" are evaluated.
    +
    +
    Parameters:
    +
    filter - the filter with information about cudaVisibleDevices, transformersCache, etc
    +
    predictionFilePath - path to csv file with two columns (text left and text right).
    +
    wordsToDetect - the words which should be detected
    +
    Returns:
    +
    a list of list of confidences (for each class one confidence) it corresponds to the probability that the generated + token is predicted
    +
    Throws:
    +
    PythonServerException - in case something goes wrong.
    +
    +
    +
  • +
  • transformersMultiClassPrediction

    public List<List<Double>> transformersMultiClassPrediction(TransformersFilter filter, @@ -1235,6 +1269,19 @@

    getCanonicalPath

  • +
    +

    getCanonicalPathNonExistent

    +
    private String getCanonicalPathNonExistent(File file)
    +
    Obtain the canonical model path.
    +
    +
    Parameters:
    +
    file - the file to get the canonical path from
    +
    Returns:
    +
    The canonical path as String.
    +
    +
    +
  • +
  • runGroupShuffleSplit

    public List<Integer> runGroupShuffleSplit(List<Integer> groups, diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/class-use/PythonServerException.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/class-use/PythonServerException.html index 4e67d1d56d..aa1cf47d63 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/class-use/PythonServerException.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/class-use/PythonServerException.html @@ -86,28 +86,35 @@

    Uses of
    Run sentence transformers prediction.

    -
    void
    -
    + +
    PythonServer.textGenerationPrediction(LLMBase filter, + File predictionFilePath, + List<Set<String>> wordsToDetect)
    -
    Finetune a transformers model with the given parameters and write this model to a given folder.
    +
    Run text generation model (like a large language model llm) given a file with left and right value which are replaced .
    void
    -
    PythonServer.transformersFineTuningHpSearch(TransformersFineTunerHpSearch hpsearch, +
    PythonServer.transformersFineTuning(TransformersFineTuner fineTuner, File trainingFile)
    +
    Finetune a transformers model with the given parameters and write this model to a given folder.
    +
    +
    void
    +
    PythonServer.transformersFineTuningHpSearch(TransformersFineTunerHpSearch hpsearch, + File trainingFile)
    +
    Run a hyperparameter fine tuning.
    - -
    PythonServer.transformersMultiClassPrediction(TransformersFilter filter, + +
    PythonServer.transformersMultiClassPrediction(TransformersFilter filter, File predictionFilePath)
    -
    +
    Run a transformers model on a CSV file with two columns (text left and text right) for multi class prediction.
    - -
    PythonServer.transformersPrediction(TransformersFilter filter, + +
    PythonServer.transformersPrediction(TransformersFilter filter, File predictionFilePath)
    -
    +
    Run a transformers model on a CSV file with two columns (text left and text right) to predict if they describe the same concept.
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBase.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBase.html new file mode 100644 index 0000000000..f7a2c8f19b --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBase.html @@ -0,0 +1,646 @@ + + + + +LLMBase (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + + + +
    +
    +
    All Implemented Interfaces:
    +
    Filter, IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>, eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge, eu.sealsproject.platform.res.tool.api.IPlugin, eu.sealsproject.platform.res.tool.api.IToolBridge
    +
    +
    +
    Direct Known Subclasses:
    +
    LLMBinaryFilter, LLMChooseGivenEntityFilter
    +
    +
    +
    public abstract class LLMBase +extends TransformersBase +implements Filter
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target. + Correspondences needs to be provided such that candidates are available. + It will only keep correspondences which are stated to be useful. + The difference to #LLMBinaryFilter is that all possible matches arte given to the LLM model.
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        promt

        +
        protected String promt
        +
        The promt to use for the LLM. + Subclasses may interpret the promt differently.
        +
        +
      • +
      • +
        +

        debugFile

        +
        protected File debugFile
        +
        If set to a existing file, this class writes additional debug information to the corresponding file.
        +
        +
      • +
      • +
        +

        wordStopper

        +
        protected boolean wordStopper
        +
        If set to true, the generation will be stopped if yes or no words appear.
        +
        +
      • +
      • +
        +

        wordForcer

        +
        protected boolean wordForcer
        +
        If set to true, the generation will be stopped if yes or no words appear.
        +
        +
      • +
      • +
        +

        loadingArguments

        +
        protected TransformersArguments loadingArguments
        +
        Can add any parameter which are passed to the from_pretrained method.
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        LLMBase

        +
        public LLMBase(TextExtractorMap extractor, + String modelName, + String promt)
        +
        Constructor with all required parameters and default values for optional parameters (can be changed by setters). + It uses the systems default tmp dir to store the files with texts generated from the knowledge graphs. + Pytorch is used instead of tensorflow and all visible GPUs are used for prediction.
        +
        +
        Parameters:
        +
        extractor - the extractor to select which text for each resource should be used.
        +
        modelName - the model name which can be a model id (a hosted model on huggingface.co) or a path to a directory containing a model and tokenizer + ( + see first parameter pretrained_model_name_or_path of the from_pretrained + function in huggingface library). In case of a path, it should be absolute. + The path can be generated by e.g. FileUtil.getCanonicalPathIfPossible(java.io.File)
        +
        promt - The promt to use for the LLM. Use {left} and {right} to insert the text representation of the left and right concept.
        +
        +
        +
      • +
      • +
        +

        LLMBase

        +
        public LLMBase(TextExtractor extractor, + String modelName, + String promt)
        +
        Constructor with all required parameters and default values for optional parameters (can be changed by setters). + It uses the systems default tmp dir to store the files with texts generated from the knowledge graphs. + Pytorch is used instead of tensorflow and all visible GPUs are used for prediction.
        +
        +
        Parameters:
        +
        extractor - the extractor to select which text for each resource should be used.
        +
        modelName - the model name which can be a model id (a hosted model on huggingface.co) or a path to a directory containing a model and tokenizer + ( + see first parameter pretrained_model_name_or_path of the from_pretrained + function in huggingface library). In case of a path, it should be absolute. + The path can be generated by e.g. FileUtil.getCanonicalPathIfPossible(java.io.File)
        +
        promt - The promt to use for the LLM. Use {left} and {right} to insert the text representation of the left and right concept.
        +
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        predictConfidences

        +
        protected List<List<Double>> predictConfidences(File predictionFilePath, + List<Set<String>> wordsToDetect) + throws Exception
        +
        Run huggingface transformers library.
        +
        +
        Parameters:
        +
        predictionFilePath - path to csv file with two columns (text left and text right).
        +
        wordsToDetect - the words which should be detected
        +
        Returns:
        +
        a list of confidences
        +
        Throws:
        +
        Exception - in case something goes wrong.
        +
        +
        +
      • +
      • +
        +

        getPromt

        +
        public String getPromt()
        +
        +
      • +
      • +
        +

        setPromt

        +
        public void setPromt(String promt)
        +
        +
      • +
      • +
        +

        getDebugFile

        +
        public File getDebugFile()
        +
        +
      • +
      • +
        +

        setDebugFile

        +
        public void setDebugFile(File debugFile)
        +
        +
      • +
      • +
        +

        isWordStopper

        +
        public boolean isWordStopper()
        +
        +
      • +
      • +
        +

        setWordStopper

        +
        public void setWordStopper(boolean wordStopper)
        +
        If set to true the text generation will automatically stop if the word yes or no is generated.
        +
        +
        Parameters:
        +
        wordStopper - fi true the generation stops on yes or no automatically.
        +
        +
        +
      • +
      • +
        +

        isWordForcer

        +
        public boolean isWordForcer()
        +
        +
      • +
      • +
        +

        setWordForcer

        +
        public void setWordForcer(boolean wordForcer)
        +
        When setting this option to true, the constrained beam search is activated and the words yes and no will be forced. + This also means that the "num_beams" attribute in the generation arguments needs to be set to a number higher than one.
        +
        +
        Parameters:
        +
        wordForcer - true or false
        +
        +
        +
      • +
      • +
        +

        includeMoreVariations

        +
        public static Set<String> includeMoreVariations(String... words)
        +
        This functions add more word variations to the set of words. + This will be applied to all words in the set. Thus it should only contain similar words or variations. + This includes lower, upper, and title case as well as prefixing with space.
        +
        +
        Parameters:
        +
        words - words
        +
        Returns:
        +
        all variation of the words.
        +
        +
        +
      • +
      • +
        +

        includeMoreVariations

        +
        public static Set<String> includeMoreVariations(Set<String> words)
        +
        This functions add more word variations to the set of words. + This will be applied to all words in the set. Thus it should only contain similar words or variations. + This includes lower, upper, and title case as well as prefixing with space.
        +
        +
        Parameters:
        +
        words - words
        +
        Returns:
        +
        all variation of the words.
        +
        +
        +
      • +
      • +
        +

        getGenerationArguments

        +
        public TransformersArguments getGenerationArguments()
        +
        Returns the arguments which can be used for the + generate function of transformers library.
        +
        +
        Returns:
        +
        the generation arguments
        +
        +
        +
      • +
      • +
        +

        setGenerationArguments

        +
        public void setGenerationArguments(TransformersArguments generationArguments)
        +
        Set the arguments which can be used for the + generate function of transformers library.
        +
        +
        Parameters:
        +
        generationArguments - the new geenration arguments
        +
        +
        +
      • +
      • +
        +

        addGenerationArgument

        +
        public LLMBase addGenerationArgument(String key, + Object value)
        +
        Add parameters which are passed to the + generate function of transformers library.
        +
        +
        Parameters:
        +
        key - the key to use: possible options.
        +
        value - the corresponding value
        +
        Returns:
        +
        the object to allow for further addGenerationArgument calls.
        +
        +
        +
      • +
      • +
        +

        getLoadingArguments

        +
        public TransformersArguments getLoadingArguments()
        +
        Returns parameters which are passed to the from_pretrained method.
        +
        +
        Returns:
        +
        the loading arguments.
        +
        +
        +
      • +
      • +
        +

        setLoadingArguments

        +
        public void setLoadingArguments(TransformersArguments loadingArguments)
        +
        Set the arguments which are passed to the from_pretrained method.
        +
        +
        Parameters:
        +
        loadingArguments - new loading arguments
        +
        +
        +
      • +
      • +
        +

        addLoadingArgument

        +
        public LLMBase addLoadingArgument(String key, + Object value)
        +
        Can add any parameter which are passed to the from_pretrained method.
        +
        +
        Parameters:
        +
        key - the key to use e.g. load_in_8bit
        +
        value - the corresponding value
        +
        Returns:
        +
        the object to allow for further addGenerationArgument calls.
        +
        +
        +
      • +
      • +
        +

        addLoadingArguments

        +
        public LLMBase addLoadingArguments(TransformersArguments loadingArguments)
        +
        +
      • +
      • +
        +

        setTrainingArguments

        +
        public void setTrainingArguments(TransformersArguments configuration)
        +
        Do not allow to set training arguments - not used for llms.
        +
        +
        Overrides:
        +
        setTrainingArguments in class TransformersBase
        +
        Parameters:
        +
        configuration - the trainer configuration
        +
        +
        +
      • +
      • +
        +

        addTrainingArgument

        +
        public void addTrainingArgument(String key, + Object value)
        +
        Description copied from class: TransformersBase
        +
        Adds a training argument for the transformers trainer. + Any of the training arguments which are listed on the documentation + can be used.
        +
        +
        Overrides:
        +
        addTrainingArgument in class TransformersBase
        +
        Parameters:
        +
        key - The key of the training argument like warmup_ratio
        +
        value - the corresponding value like 0.2
        +
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBinaryFilter.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBinaryFilter.html new file mode 100644 index 0000000000..e3a8936f6c --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMBinaryFilter.html @@ -0,0 +1,454 @@ + + + + +LLMBinaryFilter (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + + + +
    +
    +
    All Implemented Interfaces:
    +
    Filter, IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>, eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge, eu.sealsproject.platform.res.tool.api.IPlugin, eu.sealsproject.platform.res.tool.api.IToolBridge
    +
    +
    +
    public class LLMBinaryFilter +extends LLMBase +implements Filter
    +
    This filter asks a LLM if a given correspondence is correct or not. + It has no information about the other correspondences and each correspondence becomes a prediction example for the LLM. + It will add the corresponding confidence to the correspondence such that a filtering afterwards is possible.
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      + +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        LLMBinaryFilter

        +
        public LLMBinaryFilter(TextExtractorMap extractor, + String modelName, + String promt)
        +
        Constructor with all required parameters and default values for optional parameters (can be changed by setters). + It uses the systems default tmp dir to store the files with texts generated from the knowledge graphs. + Pytorch is used instead of tensorflow and all visible GPUs are used for prediction.
        +
        +
        Parameters:
        +
        extractor - the extractor to select which text for each resource should be used.
        +
        modelName - the model name which can be a model id (a hosted model on huggingface.co) or a path to a directory containing a model and tokenizer + ( + see first parameter pretrained_model_name_or_path of the from_pretrained + function in huggingface library). In case of a path, it should be absolute. + The path can be generated by e.g. FileUtil.getCanonicalPathIfPossible(java.io.File)
        +
        promt - The promt to use for the LLM. Use {left} and {right} to insert the text representation of the left and right concept.
        +
        +
        +
      • +
      • +
        +

        LLMBinaryFilter

        +
        public LLMBinaryFilter(TextExtractor extractor, + String modelName, + String promt)
        +
        Constructor with all required parameters and default values for optional parameters (can be changed by setters). + It uses the systems default tmp dir to store the files with texts generated from the knowledge graphs. + Pytorch is used instead of tensorflow and all visible GPUs are used for prediction.
        +
        +
        Parameters:
        +
        extractor - the extractor to select which text for each resource should be used.
        +
        modelName - the model name which can be a model id (a hosted model on huggingface.co) or a path to a directory containing a model and tokenizer + ( + see first parameter pretrained_model_name_or_path of the from_pretrained + function in huggingface library). In case of a path, it should be absolute. + The path can be generated by e.g. FileUtil.getCanonicalPathIfPossible(java.io.File)
        +
        promt - The promt to use for the LLM. Use {left} and {right} to insert the text representation of the left and right concept.
        +
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        match

        +
        public Alignment match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties) + throws Exception
        +
        Description copied from class: MatcherYAAAJena
        +
        Aligns two ontologies specified via a Jena OntModel, with an input alignment + as Alignment object, and returns the mapping of the resulting alignment. + + Note: This method might be called multiple times in a row when using the evaluation framework. + Make sure to return a mapping which is specific to the given inputs.
        +
        +
        Specified by:
        +
        match in interface IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>
        +
        Specified by:
        +
        match in class MatcherYAAAJena
        +
        Parameters:
        +
        source - This OntModel represents the source ontology.
        +
        target - This OntModel represents the target ontology.
        +
        inputAlignment - This mapping represents the input alignment.
        +
        properties - Additional properties.
        +
        Returns:
        +
        The resulting alignment of the matching process.
        +
        Throws:
        +
        Exception - Any exception which occurs during matching.
        +
        +
        +
      • +
      • +
        +

        createPredictionFile

        +
        public Map<Correspondence,List<Integer>> createPredictionFile(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment predictionAlignment, + File outputFile, + boolean append) + throws IOException
        +
        Create the prediction file which is a CSV file with two columns.The first column is the text from the left resource and the second column is the text from the right resource.
        +
        +
        Parameters:
        +
        source - The source model
        +
        target - The target model
        +
        predictionAlignment - the alignment to process. All correspondences which have enough text are used.
        +
        outputFile - the csv file to which the output should be written to.
        +
        append - if true, then the training alignment is append to the given file.
        +
        Returns:
        +
        the map which maps the the correspondence to (possibly multiple) row numbers. + In case of multipleTextsToMultipleExamples is set to true, multiple rows can correspond to one correspondence, + because each text (e.g. label, comment etc) of the two resources is used as an example.
        +
        Throws:
        +
        IOException - in case the writing fails.
        +
        +
        +
      • +
      • +
        +

        getPositiveWords

        +
        public Set<String> getPositiveWords()
        +
        +
      • +
      • +
        +

        setPositiveWords

        +
        public void setPositiveWords(Set<String> positiveWords)
        +
        +
      • +
      • +
        +

        addPositiveWord

        +
        public void addPositiveWord(String positiveWord)
        +
        +
      • +
      • +
        +

        getNegativeWords

        +
        public Set<String> getNegativeWords()
        +
        +
      • +
      • +
        +

        setNegativeWords

        +
        public void setNegativeWords(Set<String> negativeWords)
        +
        +
      • +
      • +
        +

        addNegativeWord

        +
        public void addNegativeWord(String negativeWord)
        +
        +
      • +
      • +
        +

        getWordsToDetect

        +
        protected List<Set<String>> getWordsToDetect()
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMChooseGivenEntityFilter.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMChooseGivenEntityFilter.html new file mode 100644 index 0000000000..698c91f00d --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/LLMChooseGivenEntityFilter.html @@ -0,0 +1,387 @@ + + + + +LLMChooseGivenEntityFilter (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + +
    + +

    Class LLMChooseGivenEntityFilter

    +
    + +
    +
    +
    All Implemented Interfaces:
    +
    Filter, IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>, eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge, eu.sealsproject.platform.res.tool.api.IPlugin, eu.sealsproject.platform.res.tool.api.IToolBridge
    +
    +
    +
    public class LLMChooseGivenEntityFilter +extends LLMBase +implements Filter
    +
    This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment). + Afterwards the same is done in the reversed direction.
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        NEWLINE

        +
        private static final String NEWLINE
        +
        +
      • +
      • +
        +

        LOGGER

        +
        private static final org.slf4j.Logger LOGGER
        +
        +
      • +
      • +
        +

        useNumbers

        +
        protected boolean useNumbers
        +
        +
      • +
      • +
        +

        BINARY_ADDITIONAL_CONFIDENCE_KEY

        +
        public static final String BINARY_ADDITIONAL_CONFIDENCE_KEY
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        LLMChooseGivenEntityFilter

        +
        public LLMChooseGivenEntityFilter(TextExtractorMap extractor, + String modelName, + String promt)
        +
        Constructor with all required parameters and default values for optional parameters (can be changed by setters). + It uses the systems default tmp dir to store the files with texts generated from the knowledge graphs. + Pytorch is used instead of tensorflow and all visible GPUs are used for prediction.
        +
        +
        Parameters:
        +
        extractor - the extractor to select which text for each resource should be used.
        +
        modelName - the model name which can be a model id (a hosted model on huggingface.co) or a path to a directory containing a model and tokenizer + ( + see first parameter pretrained_model_name_or_path of the from_pretrained + function in huggingface library). In case of a path, it should be absolute. + The path can be generated by e.g. FileUtil.getCanonicalPathIfPossible(java.io.File)
        +
        promt - The promt to use for the LLM. Use text {candidates} to insert the text representation of all candidates with alphabetical enumerations.
        +
        +
        +
      • +
      • +
        +

        LLMChooseGivenEntityFilter

        +
        public LLMChooseGivenEntityFilter(TextExtractor extractor, + String modelName, + String promt)
        +
        Constructor with all required parameters and default values for optional parameters (can be changed by setters). + It uses the systems default tmp dir to store the files with texts generated from the knowledge graphs. + Pytorch is used instead of tensorflow and all visible GPUs are used for prediction.
        +
        +
        Parameters:
        +
        extractor - the extractor to select which text for each resource should be used.
        +
        modelName - the model name which can be a model id (a hosted model on huggingface.co) or a path to a directory containing a model and tokenizer + ( + see first parameter pretrained_model_name_or_path of the from_pretrained + function in huggingface library). In case of a path, it should be absolute. + The path can be generated by e.g. FileUtil.getCanonicalPathIfPossible(java.io.File)
        +
        promt - The promt to use for the LLM. Use {left} and {right} to insert the text representation of the left and right concept.
        +
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        match

        +
        public Alignment match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties) + throws Exception
        +
        Description copied from class: MatcherYAAAJena
        +
        Aligns two ontologies specified via a Jena OntModel, with an input alignment + as Alignment object, and returns the mapping of the resulting alignment. + + Note: This method might be called multiple times in a row when using the evaluation framework. + Make sure to return a mapping which is specific to the given inputs.
        +
        +
        Specified by:
        +
        match in interface IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>
        +
        Specified by:
        +
        match in class MatcherYAAAJena
        +
        Parameters:
        +
        source - This OntModel represents the source ontology.
        +
        target - This OntModel represents the target ontology.
        +
        inputAlignment - This mapping represents the input alignment.
        +
        properties - Additional properties.
        +
        Returns:
        +
        The resulting alignment of the matching process.
        +
        Throws:
        +
        Exception - Any exception which occurs during matching.
        +
        +
        +
      • +
      • +
        +

        getEnumerationLabel

        +
        private String getEnumerationLabel(int i)
        +
        +
      • +
      • +
        +

        getList

        +
        private List<Correspondence> getList(Iterable<Correspondence> a)
        +
        +
      • +
      • +
        +

        generateWordsToDetect

        +
        private List<Set<String>> generateWordsToDetect(int maxNumberOfCandidates)
        +
        +
      • +
      • +
        +

        getOneTextualRepresentation

        +
        protected String getOneTextualRepresentation(org.apache.jena.rdf.model.Resource r, + Map<org.apache.jena.rdf.model.Resource,String> cache)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersFineTuner.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersFineTuner.html index 0581d902c9..f71b0b50b7 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersFineTuner.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersFineTuner.html @@ -225,7 +225,7 @@

    Method Summary

    setTrainBatchSize(int trainBatchSize)
     
    void
    - +
    This class does not allow setting training argumnets.
    @@ -490,13 +490,13 @@

    writeOneTriplet

  • -
    +

    setTrainingArguments

    -
    public void setTrainingArguments(TransformersTrainerArguments trainingArguments)
    +
    public void setTrainingArguments(TransformersArguments trainingArguments)
    This class does not allow setting training argumnets. Everything is determined by attributes.
    Overrides:
    -
    setTrainingArguments in class TransformersBase
    +
    setTrainingArguments in class TransformersBase
    Parameters:
    trainingArguments - training arguments
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersMatcher.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersMatcher.html index c4c912691a..a7f4f6e162 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersMatcher.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersMatcher.html @@ -123,15 +123,18 @@

    Field Summary

    private int
     
    - - + +
     
    -
    private int
    - + +
     
    -
    private boolean
    - +
    private int
    +
     
    +
    private boolean
    + +
     
  • Fields inherited from class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase

    @@ -169,22 +172,26 @@

    Method Summary

    Modifier and Type
    Method
    Description
    -
    private int
    -
    createTextFile(org.apache.jena.ontology.OntModel model, - File file, - ResourcesExtractor extractor, - Properties parameters)
    +
    void
    +
     
    -
    int
    - -
    -
    Returns the number of enties which are scaned at a time.
    -
    +
    private int
    +
    createTextFile(Iterator<? extends org.apache.jena.ontology.OntResource> resourceIterator, + File file)
    +
     
    int
    - +
    +
    Returns the number of enties which are scaned at a time.
    +
    +
    int
    + +
    Returns the number of queries which are processed simultaneously.
    + + +
     
     
    @@ -199,7 +206,7 @@

    Method Summary

    void
    -
    Initialises the resource extractors such that classes, datatypeproperties, objectproperties, all other properties, +
    Initialises the resource extractors such that classes, datatypeproperties, objectproperties, all other properties (rdf properties - not owl), and instances are matched if the properties suggests to do so.
    boolean
    @@ -237,26 +244,29 @@

    Method Summary

    Sets the number of queries which are processed simultaneously.
    void
    - +
     
    void
    -
    setTopK(int topK)
    -
    -
    Sets the number which represents how many correspondences should be created per resource.
    -
    + +
     
    void
    -
    setTopkPerResource(boolean topkPerResource)
    +
    setTopK(int topK)
    -
    If set to true, the topk parameter applies to number of resources and not to number of extracted texts.
    +
    Sets the number which represents how many correspondences should be created per resource.
    void
    - +
    setTopkPerResource(boolean topkPerResource)
    -
    No training arguments can be used for SentenceTransformersMatcher - do NOT call this method.
    +
    If set to true, the topk parameter applies to number of resources and not to number of extracted texts.
    void
    -
    setUsingTensorflow(boolean usingTensorflow)
    +
    +
    No training arguments can be used for SentenceTransformersMatcher - do NOT call this method.
    +
    +
    void
    +
    setUsingTensorflow(boolean usingTensorflow)
    +
    SentenceTransformersMatcher only supports PyTorch - thus setting tensorflow to true, will result in an error.
    @@ -345,6 +355,12 @@

    topkPerResource

    private boolean topkPerResource
    +
  • +
    +

    resourceFilters

    +
    private List<Class<? extends SentenceTransformersPredicate>> resourceFilters
    +
    +
  • @@ -407,12 +423,10 @@

    match

  • -
    +

    createTextFile

    -
    private int createTextFile(org.apache.jena.ontology.OntModel model, - File file, - ResourcesExtractor extractor, - Properties parameters) +
    private int createTextFile(Iterator<? extends org.apache.jena.ontology.OntResource> resourceIterator, + File file) throws IOException
    Throws:
    @@ -424,7 +438,7 @@

    createTextFile

    initialiseResourceExtractor

    public void initialiseResourceExtractor()
    -
    Initialises the resource extractors such that classes, datatypeproperties, objectproperties, all other properties, +
    Initialises the resource extractors such that classes, datatypeproperties, objectproperties, all other properties (rdf properties - not owl), and instances are matched if the properties suggests to do so.
  • @@ -574,13 +588,31 @@

    setTopkPerResource

  • -
    +
    +

    getResourceFilters

    +
    public List<Class<? extends SentenceTransformersPredicate>> getResourceFilters()
    +
    +
  • +
  • +
    +

    setResourceFilters

    +
    public void setResourceFilters(List<Class<? extends SentenceTransformersPredicate>> resourceFilters)
    +
    +
  • +
  • +
    +

    addResourceFilter

    +
    public void addResourceFilter(Class<? extends SentenceTransformersPredicate> resourceFilter)
    +
    +
  • +
  • +

    setTrainingArguments

    -
    public void setTrainingArguments(TransformersTrainerArguments trainingArguments)
    +
    public void setTrainingArguments(TransformersArguments trainingArguments)
    No training arguments can be used for SentenceTransformersMatcher - do NOT call this method.
    Overrides:
    -
    setTrainingArguments in class TransformersBase
    +
    setTrainingArguments in class TransformersBase
    Parameters:
    trainingArguments - training arguments
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersPredicate.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersPredicate.html new file mode 100644 index 0000000000..58ddf03131 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersPredicate.html @@ -0,0 +1,156 @@ + + + + +SentenceTransformersPredicate (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + +
    + +

    Interface SentenceTransformersPredicate

    +
    +
    +
    +
    All Known Implementing Classes:
    +
    SentenceTransformersPredicateInputAlignment
    +
    +
    +
    public interface SentenceTransformersPredicate
    +
    +
    +
      + +
    • +
      +

      Method Summary

      +
      +
      +
      +
      +
      Modifier and Type
      +
      Method
      +
      Description
      +
      void
      +
      init(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties parameters)
      +
       
      +
      boolean
      +
      keepSourceEntity(org.apache.jena.ontology.OntResource r)
      +
       
      +
      boolean
      +
      keepTargetEntity(org.apache.jena.ontology.OntResource r)
      +
       
      +
      +
      +
      +
      +
    • +
    +
    +
    +
      + +
    • +
      +

      Method Details

      +
        +
      • +
        +

        init

        +
        void init(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties parameters)
        +
        +
      • +
      • +
        +

        keepSourceEntity

        +
        boolean keepSourceEntity(org.apache.jena.ontology.OntResource r)
        +
        +
      • +
      • +
        +

        keepTargetEntity

        +
        boolean keepTargetEntity(org.apache.jena.ontology.OntResource r)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersPredicateInputAlignment.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersPredicateInputAlignment.html new file mode 100644 index 0000000000..0c9d9a51b2 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/SentenceTransformersPredicateInputAlignment.html @@ -0,0 +1,241 @@ + + + + +SentenceTransformersPredicateInputAlignment (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + +
    + +

    Class SentenceTransformersPredicateInputAlignment

    +
    +
    java.lang.Object +
    de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment
    +
    +
    +
    +
    All Implemented Interfaces:
    +
    SentenceTransformersPredicate
    +
    +
    +
    public class SentenceTransformersPredicateInputAlignment +extends Object +implements SentenceTransformersPredicate
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        sourceURLs

        +
        private Set<String> sourceURLs
        +
        +
      • +
      • +
        +

        targetURLs

        +
        private Set<String> targetURLs
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        SentenceTransformersPredicateInputAlignment

        +
        public SentenceTransformersPredicateInputAlignment()
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Method Details

      + +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersTrainerArguments.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersArguments.html similarity index 74% rename from javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersTrainerArguments.html rename to javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersArguments.html index 116b993985..2223524829 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersTrainerArguments.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersArguments.html @@ -2,10 +2,10 @@ -TransformersTrainerArguments (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) +TransformersArguments (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) - + @@ -34,7 +34,7 @@
  • Overview
  • Package
  • -
  • Use
  • +
  • Use
  • Tree
  • Deprecated
  • Index
  • @@ -69,20 +69,18 @@
    -

    Class TransformersTrainerArguments

    +

    Class TransformersArguments

    java.lang.Object -
    de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    +
    de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments

    -
    public class TransformersTrainerArguments +
    public class TransformersArguments extends Object
    -
    This class represents the arguments for the huggingface trainer. - Any of the training arguments which are listed on the documentation - can be used. +
    This class represents the arguments for the transformers library.
    
    - TransformerConfiguration config = new TransformerConfiguration("do_train", true, "warmup_ratio", 0.2, ...);
    + TransformersArguments config = new TransformersArguments("do_train", true, "warmup_ratio", 0.2, ...);
      config.addParameter("logging_strategy", "no");
      
    @@ -117,13 +115,13 @@

    Constructor Summary

    @@ -139,7 +137,13 @@

    Method Summary

    Modifier and Type
    Method
    Description
    - + + +
     
    + + +
     
    +
    addParameter(String key, Object value)
     
    @@ -201,26 +205,26 @@

    Constructor Details

    • -

      TransformersTrainerArguments

      -
      public TransformersTrainerArguments()
      +

      TransformersArguments

      +
      public TransformersArguments()
    • -
      -

      TransformersTrainerArguments

      -
      public TransformersTrainerArguments(TransformersTrainerArguments copyArguments)
      +
      +

      TransformersArguments

      +
      public TransformersArguments(TransformersArguments copyArguments)
    • -

      TransformersTrainerArguments

      -
      public TransformersTrainerArguments(Map<String,Object> config)
      +

      TransformersArguments

      +
      public TransformersArguments(Map<String,Object> config)
    • -

      TransformersTrainerArguments

      -
      public TransformersTrainerArguments(Object... config)
      +

      TransformersArguments

      +
      public TransformersArguments(Object... config)
    @@ -238,9 +242,21 @@

    parseExtensions

  • +
    +

    addAll

    +
    public TransformersArguments addAll(TransformersArguments arguments)
    +
    +
  • +
  • +
    +

    addAll

    +
    public TransformersArguments addAll(Map<String,Object> map)
    +
    +
  • +
  • addParameter

    -
    public TransformersTrainerArguments addParameter(String key, +
    public TransformersArguments addParameter(String key, Object value)
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBase.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBase.html index e61043e634..97d7913aab 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBase.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBase.html @@ -91,7 +91,7 @@

    Class TransformersBase

    Direct Known Subclasses:
    -
    SentenceTransformersMatcher, TransformersBaseFineTuner, TransformersFilter
    +
    LLMBase, SentenceTransformersMatcher, TransformersBaseFineTuner, TransformersFilter

    public abstract class TransformersBase @@ -134,7 +134,7 @@

    Field Summary

    private static final Pattern
     
    - +
     
    protected File
    @@ -238,7 +238,7 @@

    Method Summary

    getTextualRepresentation(org.apache.jena.rdf.model.Resource r, Map<org.apache.jena.rdf.model.Resource,Map<String,Set<String>>> cache)
     
    - +
    Returns the training arguments of the huggingface trainer.
    @@ -309,7 +309,7 @@

    Method Summary

    Enable or disable the mixed precision training.
    void
    - +
    Sets the training arguments of the huggingface trainer.
    @@ -384,7 +384,7 @@

    modelName

  • trainingArguments

    -
    protected TransformersTrainerArguments trainingArguments
    +
    protected TransformersArguments trainingArguments
  • @@ -557,9 +557,10 @@

    setModelName

  • getTrainingArguments

    -
    public TransformersTrainerArguments getTrainingArguments()
    +
    public TransformersArguments getTrainingArguments()
    Returns the training arguments of the huggingface trainer. - Any of the training arguments can be used. For further documentation, seeTransformersTrainerArguments
    + Any of the training arguments which are listed on the documentation + can be used.
  • Returns:
    the transformer location
    @@ -567,11 +568,12 @@

    getTrainingArguments

  • -
    +

    setTrainingArguments

    -
    public void setTrainingArguments(TransformersTrainerArguments configuration)
    +
    public void setTrainingArguments(TransformersArguments configuration)
    Sets the training arguments of the huggingface trainer. - Any of the training arguments can be used. For further documentation, seeTransformersTrainerArguments
    + Any of the training arguments which are listed on the documentation + can be used.
  • Parameters:
    configuration - the trainer configuration
    @@ -584,7 +586,8 @@

    addTrainingArgument

    public void addTrainingArgument(String key, Object value)
    Adds a training argument for the transformers trainer. - Any of the trainer arguments can be used. For further documentation, seeTransformersTrainerArguments.
    + Any of the training arguments which are listed on the documentation + can be used.
    Parameters:
    key - The key of the training argument like warmup_ratio
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBaseFineTuner.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBaseFineTuner.html index 7957d10a4b..8d2c56bdb2 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBaseFineTuner.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersBaseFineTuner.html @@ -246,7 +246,7 @@

    Method Summary

    +addTrainingArgument, getCudaVisibleDevices, getCudaVisibleDevicesButOnlyOneGPU, getExamplesForBatchSizeOptimization, getExtractor, getExtractorMap, getModelName, getMultiProcessing, getTextualRepresentation, getTrainingArguments, getTransformersCache, isMultipleTextsToMultipleExamples, isOptimizeForMixedPrecisionTraining, isUsingTensorflow, setCudaVisibleDevices, setCudaVisibleDevices, setExtractor, setExtractorMap, setModelName, setMultipleTextsToMultipleExamples, setMultiProcessing, setOptimizeForMixedPrecisionTraining, setTrainingArguments, setTransformersCache, setUsingTensorflow, writeExamplesToFile

    Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena

    getModelSpec, match, readOntology
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFilter.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFilter.html index 0c9b9ad45d..51b8338677 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFilter.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFilter.html @@ -244,7 +244,7 @@

    Method Summary

    +addTrainingArgument, getCudaVisibleDevices, getCudaVisibleDevicesButOnlyOneGPU, getExamplesForBatchSizeOptimization, getExtractor, getExtractorMap, getModelName, getMultiProcessing, getTextualRepresentation, getTrainingArguments, getTransformersCache, isMultipleTextsToMultipleExamples, isOptimizeForMixedPrecisionTraining, isUsingTensorflow, setCudaVisibleDevices, setCudaVisibleDevices, setExtractor, setExtractorMap, setModelName, setMultipleTextsToMultipleExamples, setMultiProcessing, setOptimizeForMixedPrecisionTraining, setTrainingArguments, setTransformersCache, setUsingTensorflow, writeExamplesToFile

    Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena

    getModelSpec, match, readOntology
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFineTuner.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFineTuner.html index 534d3d7ddc..9cb0bc7ae7 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFineTuner.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersFineTuner.html @@ -215,7 +215,7 @@

    clearTrainingData, createTrainingFile, finetuneModel, getResultingModelLocation, getTrainingFile, isAdditionallySwitchSourceTarget, match, setAdditionallySwitchSourceTarget, setResultingModelLocation, writeClassificationFormat, writeTrainingFile

    +addTrainingArgument, getCudaVisibleDevices, getCudaVisibleDevicesButOnlyOneGPU, getExamplesForBatchSizeOptimization, getExtractor, getExtractorMap, getModelName, getMultiProcessing, getTextualRepresentation, getTrainingArguments, getTransformersCache, isMultipleTextsToMultipleExamples, isOptimizeForMixedPrecisionTraining, isUsingTensorflow, setCudaVisibleDevices, setCudaVisibleDevices, setExtractor, setExtractorMap, setModelName, setMultipleTextsToMultipleExamples, setMultiProcessing, setOptimizeForMixedPrecisionTraining, setTrainingArguments, setTransformersCache, setUsingTensorflow, writeExamplesToFile

    Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena

    getModelSpec, match, readOntology
    @@ -364,7 +364,7 @@

    addTrainingParameterToMakeTrainingFaster

    public void addTrainingParameterToMakeTrainingFaster()
    This will add (potencially multiple) training parameters to the current trainingArguments to make the training faster. Thus do not change the trainingArguments object afterwards - (with setTrainingArguments ). + (with setTrainingArguments ). What you can do is to add more training arguments via getTrainingArguments.addParameter (as long as you do not modify any parameters added by this method). The following parameters are set:
    +addTrainingArgument, getCudaVisibleDevices, getCudaVisibleDevicesButOnlyOneGPU, getExamplesForBatchSizeOptimization, getExtractor, getExtractorMap, getModelName, getMultiProcessing, getTextualRepresentation, getTrainingArguments, getTransformersCache, isMultipleTextsToMultipleExamples, isOptimizeForMixedPrecisionTraining, isUsingTensorflow, setCudaVisibleDevices, setCudaVisibleDevices, setExtractor, setExtractorMap, setModelName, setMultipleTextsToMultipleExamples, setMultiProcessing, setOptimizeForMixedPrecisionTraining, setTrainingArguments, setTransformersCache, setUsingTensorflow, writeExamplesToFile

    Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena

    getModelSpec, match, readOntology
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersMatcher.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersMatcher.html deleted file mode 100644 index e9cd7b14bc..0000000000 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/TransformersMatcher.html +++ /dev/null @@ -1,236 +0,0 @@ - - - - -TransformersMatcher (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) - - - - - - - - - - - - - - -
    - -
    -
    - - - -
    -
    -
    All Implemented Interfaces:
    -
    IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>, eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge, eu.sealsproject.platform.res.tool.api.IPlugin, eu.sealsproject.platform.res.tool.api.IToolBridge
    -
    -
    -
    public class TransformersMatcher -extends MatcherYAAAJena
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it. - Thus this matcher does not filter anything but generates matching candidates based on the text.
    -
    -
    -
      - -
    • -
      -

      Field Summary

      -
      -

      Fields inherited from class de.uni_mannheim.informatik.dws.melt.matching_base.MatcherFile

      -FILE_PREFIX, FILE_SUFFIX
      -
      -
    • - -
    • -
      -

      Constructor Summary

      -
      Constructors
      -
      -
      Constructor
      -
      Description
      - -
       
      -
      -
      -
    • - -
    • -
      -

      Method Summary

      -
      -
      -
      -
      -
      Modifier and Type
      -
      Method
      -
      Description
      - -
      match(org.apache.jena.ontology.OntModel source, - org.apache.jena.ontology.OntModel target, - Alignment inputAlignment, - Properties properties)
      -
      -
      Aligns two ontologies specified via a Jena OntModel, with an input alignment - as Alignment object, and returns the mapping of the resulting alignment.
      -
      -
      -
      -
      -
      -

      Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena

      -getModelSpec, match, readOntology
      -
      -

      Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAA

      -match
      -
      -

      Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_base.MatcherFile

      -match
      -
      -

      Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_base.MatcherURL

      -align, align, canExecute, getType
      -
      -

      Methods inherited from class eu.sealsproject.platform.res.tool.impl.AbstractPlugin

      -getId, getVersion, setId, setVersion
      -
      -

      Methods inherited from class java.lang.Object

      -clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
      -
      -

      Methods inherited from interface eu.sealsproject.platform.res.tool.api.IPlugin

      -getId, getVersion
      -
      -
    • -
    -
    -
    -
      - -
    • -
      -

      Constructor Details

      -
        -
      • -
        -

        TransformersMatcher

        -
        public TransformersMatcher()
        -
        -
      • -
      -
      -
    • - -
    • -
      -

      Method Details

      -
        -
      • -
        -

        match

        -
        public Alignment match(org.apache.jena.ontology.OntModel source, - org.apache.jena.ontology.OntModel target, - Alignment inputAlignment, - Properties properties) - throws Exception
        -
        Description copied from class: MatcherYAAAJena
        -
        Aligns two ontologies specified via a Jena OntModel, with an input alignment - as Alignment object, and returns the mapping of the resulting alignment. - - Note: This method might be called multiple times in a row when using the evaluation framework. - Make sure to return a mapping which is specific to the given inputs.
        -
        -
        Specified by:
        -
        match in interface IMatcher<org.apache.jena.ontology.OntModel,Alignment,Properties>
        -
        Specified by:
        -
        match in class MatcherYAAAJena
        -
        Parameters:
        -
        source - This OntModel represents the source ontology.
        -
        target - This OntModel represents the target ontology.
        -
        inputAlignment - This mapping represents the input alignment.
        -
        properties - Additional properties.
        -
        Returns:
        -
        The resulting alignment of the matching process.
        -
        Throws:
        -
        Exception - Any exception which occurs during matching.
        -
        -
        -
      • -
      -
      -
    • -
    -
    - -
    -
    -
    - -
    -
    -
    - - diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/LLMBase.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/LLMBase.html new file mode 100644 index 0000000000..cb113d1094 --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/LLMBase.html @@ -0,0 +1,135 @@ + + + + +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase

    +
    +
    Packages that use LLMBase
    + +
    + +
    +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/TransformersMatcher.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/LLMBinaryFilter.html similarity index 82% rename from javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/TransformersMatcher.html rename to javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/LLMBinaryFilter.html index a72f08fe3e..79198ab88a 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/TransformersMatcher.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/LLMBinaryFilter.html @@ -2,10 +2,10 @@ -Uses of Class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersMatcher (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) +Uses of Class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) - + @@ -29,7 +29,7 @@
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/TransformersTrainerArguments.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/TransformersTrainerArguments.html deleted file mode 100644 index 143b7d7e51..0000000000 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/class-use/TransformersTrainerArguments.html +++ /dev/null @@ -1,131 +0,0 @@ - - - - -Uses of Class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) - - - - - - - - - - - - - - -
    - -
    -
    -
    -

    Uses of Class
    de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments

    -
    - - -
    - -
    -
    -
    -
    - -
    -
    -
    - - diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/package-summary.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/package-summary.html index 3b5ebdfd40..6dbc1ee159 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/package-summary.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/package-summary.html @@ -83,7 +83,7 @@

    -
    +
    Class
    @@ -92,20 +92,40 @@

    An enum which describes entities on how to optimize the batch size.

    - -
     
    - + +
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target.
    +
    +
    +
    This filter asks a LLM if a given correspondence is correct or not.
    +
    + +
    +
    This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment).
    +
    + +
     
    + +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    - -
    + +
    Enum which lists all possible types of loss for training sentence transformers.
    - -
    + +
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    + +
     
    + +
     
    + +
    +
    This class represents the arguments for the transformers library.
    +
    This is a base class for all Transformers.
    @@ -128,22 +148,14 @@

    This class represents the search space for hyper parameters.

    - -
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    -
    - -
    + +
    The transformers library may not free all memory from GPU.
    - -
    + +
    The enum which represents the possible measure for evaluating a model during hyperparameter search.
    - -
    -
    This class represents the arguments for the huggingface trainer.
    -
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/package-tree.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/package-tree.html index d43ca411c6..9d596f3283 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/package-tree.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/package-tree.html @@ -71,6 +71,12 @@

    Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
        +
      • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter) +
          +
        • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
        • +
        • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
        • +
        +
      • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
      • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBaseFineTuner
          @@ -85,7 +91,6 @@

          Class Hierarchy

        • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersFilter (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
      • -
      • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersMatcher
    @@ -97,13 +102,20 @@

    Class Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SearchSpace
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment (implements de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicate)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
  • -
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
  • +

    Interface Hierarchy

    + +
    +

    Enum Hierarchy

    @@ -108,37 +112,43 @@

    An enum which describes entities on how to optimize the batch size.

    - +
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target.
    +
    + +
    Enum which lists all possible types of loss for training sentence transformers.
    - + +
     
    +
    -
    This is a base class for all Transformers.
    +
    This class represents the arguments for the transformers library.
    - +
    -
    This is a base class for all Transformers fine tuners.
    +
    This is a base class for all Transformers.
    - +
    -
    This class is used to fine-tune a transformer model based on a generated dataset.
    +
    This is a base class for all Transformers fine tuners.
    - +
    -
    This class represents the search space for hyper parameters.
    +
    This class is used to fine-tune a transformer model based on a generated dataset.
    - +
    -
    The transformers library may not free all memory from GPU.
    +
    This class represents the search space for hyper parameters.
    - +
    -
    The enum which represents the possible measure for evaluating a model during hyperparameter search.
    +
    The transformers library may not free all memory from GPU.
    - +
    -
    This class represents the arguments for the huggingface trainer.
    +
    The enum which represents the possible measure for evaluating a model during hyperparameter search.

    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypeFineTuner.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypeFineTuner.html index 3b4c3eb264..fcadcc4f33 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypeFineTuner.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypeFineTuner.html @@ -187,7 +187,7 @@

    clearTrainingData, createTrainingFile, finetuneModel, getResultingModelLocation, getTrainingFile, isAdditionallySwitchSourceTarget, match, setAdditionallySwitchSourceTarget, setResultingModelLocation, writeClassificationFormat

    +addTrainingArgument, getCudaVisibleDevices, getCudaVisibleDevicesButOnlyOneGPU, getExamplesForBatchSizeOptimization, getExtractor, getExtractorMap, getModelName, getMultiProcessing, getTextualRepresentation, getTrainingArguments, getTransformersCache, isMultipleTextsToMultipleExamples, isOptimizeForMixedPrecisionTraining, isUsingTensorflow, setCudaVisibleDevices, setCudaVisibleDevices, setExtractor, setExtractorMap, setModelName, setMultipleTextsToMultipleExamples, setMultiProcessing, setOptimizeForMixedPrecisionTraining, setTrainingArguments, setTransformersCache, setUsingTensorflow, writeExamplesToFile

    Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena

    getModelSpec, match, readOntology
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypePredictor.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypePredictor.html index 193da0c7f6..ff19f7e24b 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypePredictor.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_ml/python/nlptransformers/relationprediction/RelationTypePredictor.html @@ -220,7 +220,7 @@

    getBatchSizeOptimization, getMaximumPerDeviceEvalBatchSize, isChangeClass, isOptimizeAll, isOptimizeBatchSize, setBatchSizeOptimization, setOptimizeAll, setOptimizeBatchSize

    +addTrainingArgument, getCudaVisibleDevices, getCudaVisibleDevicesButOnlyOneGPU, getExamplesForBatchSizeOptimization, getExtractor, getExtractorMap, getModelName, getMultiProcessing, getTextualRepresentation, getTrainingArguments, getTransformersCache, isMultipleTextsToMultipleExamples, isOptimizeForMixedPrecisionTraining, isUsingTensorflow, setCudaVisibleDevices, setCudaVisibleDevices, setExtractor, setExtractorMap, setModelName, setMultipleTextsToMultipleExamples, setMultiProcessing, setOptimizeForMixedPrecisionTraining, setTrainingArguments, setTransformersCache, setUsingTensorflow, writeExamplesToFile

    Methods inherited from class de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena

    getModelSpec, match, readOntology
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/Alignment.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/Alignment.html index 2381a43518..830ca9d865 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/Alignment.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/Alignment.html @@ -377,362 +377,377 @@

    Method Summary

    Copies extensions from correspondences in the otherAlignment to this alignment.
    + + +
    +
    Creates a deterministic order of correspondences.
    +
    + + +
    +
    Creates a deterministic order of correspondences.
    +
    cut(double threshold)
    Returns a new alignment which contains only correspondences above or equal the given threshold (it will not modify the current object).
    - - -
     
    - -
    getCorrespondence(String source, +
    int
    +
    cutSize(double threshold)
    +
    +
    Returns only the size of the new alignment which contains only correspondences above or equal the given threshold (it will not modify the current object).
    +
    + + +
     
    + + -
    -
    Returns the specified correspondence (source, target, relation).
    -
    - -
    -
    Obtain an iterator for all correspondences where the given relation are involved.
    +
    Returns the specified correspondence (source, target, relation).
    - +
    -
    Obtain an iterator for all correspondences where the given source is involved.
    +
    Obtain an iterator for all correspondences where the given relation are involved.
    - +
    -
    Obtain an iterator for all correspondences where the given source and the given relation are involved.
    +
    Obtain an iterator for all correspondences where the given source is involved.
    - +
    -
    Returns correspondences involving the specified source AND target.
    +
    Obtain an iterator for all correspondences where the given source and the given relation are involved.
    - -
     
    + +
    +
    Returns correspondences involving the specified source AND target.
    +
    -
    getCorrespondencesTargetRelation(String target, + +
     
    + + -
    +
    Obtain an iterator for all correspondences where the given target and the given relation are involved.
    - - -
     
    - - + +
     
    - - -
    -
    Returns all used (sub-) extension keys of correspondences which can be used with method getAdditionalConfidence.
    -
    + + +
     
    - +
    +
    Returns all used (sub-) extension keys of correspondences which can be used with method getAdditionalConfidence.
    +
    + + +
    Returns all extension keys of correspondences in this alignment.
    - - -
     
    - - + +
     
    - - + +
     
    - - + +
     
    - - + +
     
    - - + +
     
    - - + +
     
    - - -
    -
    Obtain the alignment extensions as Map.
    -
    - -
    getExtensionValue(Object extensionUri)
    + + +
     
    + +
    -
    Obtain the value of an extension.
    +
    Obtain the alignment extensions as Map.
    -
    getExtensionValue(String extensionUri)
    +
    getExtensionValue(Object extensionUri)
    Obtain the value of an extension.
    - - + +
    getExtensionValue(String extensionUri)
    Obtain the value of an extension.
    - +
    Obtain the value of an extension.
    -
    <T> T
    - + +
    Obtain the value of an extension.
    <T> T
    - +
    Obtain the value of an extension.
    - - -
     
    -
    double
    - +
    <T> T
    + +
    +
    Obtain the value of an extension.
    +
    + +
     
    - - +
    double
    +
     
    -
    double
    - + +
     
    - - +
    double
    +
     
    - +
     
    - - + +
     
    -
    private void
    -
    init(boolean indexSource, + + +
     
    +
    private void
    +
    init(boolean indexSource, boolean indexTarget, boolean indexRelation, boolean indexConfidence)
    -
     
    -
    static Alignment
    -
    intersection(Alignment alignment_1, +
     
    +
    static Alignment
    +
    intersection(Alignment alignment_1, Alignment alignment_2)
    -
    +
    Create the intersection between the two given alignments.
    -
    boolean
    - -
    -
    Check whether the given relation are contained in this alignment.
    -
    boolean
    - +
    -
    Check whether the specified source is contained in this alignment instance.
    +
    Check whether the given relation are contained in this alignment.
    boolean
    - +
    -
    Check whether the given source and the given relation are contained in this alignment.
    +
    Check whether the specified source is contained in this alignment instance.
    boolean
    - +
    -
    Check whether the specified target is contained in this alignment instance.
    +
    Check whether the given source and the given relation are contained in this alignment.
    boolean
    - +
    -
    Check whether the given target and the given relation are contained in this alignment.
    +
    Check whether the specified target is contained in this alignment instance.
    -
    static long
    - -
    -
    Returns the size of the iterable.
    +
    boolean
    + +
    +
    Check whether the given target and the given relation are contained in this alignment.
    static long
    - +
    -
    Returns the size of the iterator.
    +
    Returns the size of the iterable.
    -
    static <T> List<T>
    -
    makeList(Iterable<T> iterable)
    +
    static long
    +
    -
    Creates a list from an iterable.
    +
    Returns the size of the iterator.
    -
    static <T> Set<T>
    -
    makeSet(Iterable<T> iterable)
    +
    static <T> List<T>
    +
    makeList(Iterable<T> iterable)
    -
    Creates a set from an iterable.
    +
    Creates a list from an iterable.
    -
    static Alignment
    - +
    static <T> Set<T>
    +
    makeSet(Iterable<T> iterable)
    -
    Parse a file and returns the corresponding Alignment object.More options are available when using constructors.
    +
    Creates a set from an iterable.
    static Alignment
    - +
    -
    Parse a stream and returns the corresponding Alignment object.
    +
    Parse a file and returns the corresponding Alignment object.More options are available when using constructors.
    static Alignment
    -
    parse(String text)
    +
    -
    Parse a text and returns the corresponding Alignment object.
    +
    Parse a stream and returns the corresponding Alignment object.
    -
    void
    - -
    -
    Removes all correspondence extensions.
    +
    static Alignment
    +
    parse(String text)
    +
    +
    Parse a text and returns the corresponding Alignment object.
    void
    - +
    -
    Remove all correspondence extensions which appear in blacklist.
    +
    Removes all correspondence extensions.
    void
    - +
    -
    Removes all correspondence extensions, but keep the extensions with keys appearing in whitelist.
    +
    Remove all correspondence extensions which appear in blacklist.
    void
    - -
     
    + +
    +
    Removes all correspondence extensions, but keep the extensions with keys appearing in whitelist.
    +
    void
    -
    removeCorrespondencesSourceTarget(String source, + +
     
    +
    void
    + -
    +
    Removes correspondences where source AND target appear (at the same time), i.e.
    -
    void
    - -
     
    - - -
    -
    Reverse the alignment (switches sources with targets) and adjust(reverse) the relation.
    -
    +
    void
    + +
     
    - +
    -
    Reverse the alignment (switches sources with targets) and does not change the relation.
    +
    Reverse the alignment (switches sources with targets) and adjust(reverse) the relation.
    -
    sample(int n)
    +
    -
    Returns a random sample of correspondences.
    +
    Reverse the alignment (switches sources with targets) and does not change the relation.
    -
    sample(int n, - long seed)
    +
    sample(int n)
    Returns a random sample of correspondences.
    -
    sample(int n, - Random rnd)
    +
    sample(int n, + long seed)
    Returns a random sample of correspondences.
    -
    sampleByFraction(double fraction)
    +
    sample(int n, + Random rnd)
    Returns a random sample of correspondences.
    -
    sampleByFraction(double fraction, - long seed)
    +
    sampleByFraction(double fraction)
    Returns a random sample of correspondences.
    -
    sampleByFraction(double fraction, - Random rnd)
    +
    sampleByFraction(double fraction, + long seed)
    Returns a random sample of correspondences.
    - - + +
    sampleByFraction(double fraction, + Random rnd)
    -
    Serialize this mapping to a string.
    +
    Returns a random sample of correspondences.
    -
    void
    - + +
    -
    Serialize this mapping directly to a given file in the default XML format.
    +
    Serialize this mapping to a string.
    void
    - +
    -
    Serialize this mapping directly to a given file in CSV format.
    +
    Serialize this mapping directly to a given file in the default XML format.
    void
    - +
    -
    Set the extensions of the alignment.
    +
    Serialize this mapping directly to a given file in CSV format.
    void
    - -
     
    + +
    +
    Set the extensions of the alignment.
    +
    void
    -
    setMethod(String method)
    +
     
    void
    - +
    setMethod(String method)
     
    void
    - +
     
    void
    - +
     
    -
    static Alignment
    -
    subtraction(Alignment alignment_1, +
    void
    + +
     
    +
    static Alignment
    +
    subtraction(Alignment alignment_1, Alignment alignment_2)
    -
    +
    Create the subtraction between the two given alignments.
    -
    static Alignment
    - -
    +
    static Alignment
    + +
    Deprecated.
    use function reverse
    - - -
     
    - -
    -
    ToString method which returns the alignment in multiple lines (each correspondence in one line) to have a - better overview.
    -
    + +
     
    - +
    ToString method which returns the alignment in multiple lines (each correspondence in one line) to have a better overview.
    - +
    +
    ToString method which returns the alignment in multiple lines (each correspondence in one line) to have a + better overview.
    +
    + + +
    ToString method which returns the alignment in one line.
    -
    static Alignment
    -
    union(Alignment alignment_1, +
    static Alignment
    +
    union(Alignment alignment_1, Alignment alignment_2)
    -
    +
    Create the union between the two given alignments.
    @@ -1502,6 +1517,20 @@

    cut

  • +
    +

    cutSize

    +
    public int cutSize(double threshold)
    +
    Returns only the size of the new alignment which contains only correspondences above or equal the given threshold (it will not modify the current object). + This is faster than creating the cutted alignment in case you are only interested in the size of it (e.g. for best confidence search).
    +
    +
    Parameters:
    +
    threshold - Threshold for cutting (correspondences greater than or equal the threshold will be added).
    +
    Returns:
    +
    the size of the cutted alignment.
    +
    +
    +
  • +
  • sample

    public Alignment sample(int n)
    @@ -2290,6 +2319,32 @@

    copyExtensionsToAlignment

  • +
  • +
    +

    createOrder

    +
    public static List<Correspondence> createOrder(Alignment alignment)
    +
    Creates a deterministic order of correspondences.
    +
    +
    Parameters:
    +
    alignment - the alignemtn to create the order
    +
    Returns:
    +
    an ordered alignment as list.
    +
    +
    +
  • +
  • +
    +

    createOrder

    +
    public static List<Correspondence> createOrder(List<Correspondence> alignment)
    +
    Creates a deterministic order of correspondences.
    +
    +
    Parameters:
    +
    alignment - the alignemtn to create the order
    +
    Returns:
    +
    an ordered alignment as list.
    +
    +
    +
  • diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/SSSOMFormatException.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/SSSOMFormatException.html new file mode 100644 index 0000000000..817e9dbbac --- /dev/null +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/SSSOMFormatException.html @@ -0,0 +1,198 @@ + + + + +SSSOMFormatException (MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API) + + + + + + + + + + + + + + +
    + +
    +
    + +
    + +

    Class SSSOMFormatException

    +
    +
    java.lang.Object +
    java.lang.Throwable +
    java.lang.Exception +
    de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMFormatException
    +
    +
    +
    +
    +
    +
    All Implemented Interfaces:
    +
    Serializable
    +
    +
    +
    public class SSSOMFormatException +extends Exception
    +
    Exception representing a error when data does not fit to SSSOM schema
    +
    +
    See Also:
    +
    + +
    +
    +
    +
    + +
    +
    +
      + +
    • +
      +

      Field Details

      +
        +
      • +
        +

        serialVersionUID

        +
        private static final long serialVersionUID
        +
        +
        See Also:
        +
        + +
        +
        +
        +
      • +
      +
      +
    • + +
    • +
      +

      Constructor Details

      +
        +
      • +
        +

        SSSOMFormatException

        +
        public SSSOMFormatException(String msg)
        +
        +
      • +
      • +
        +

        SSSOMFormatException

        +
        public SSSOMFormatException(String msg, + Throwable inner)
        +
        +
      • +
      +
      +
    • +
    +
    + +
    +
    +
    + +
    +
    +
    + + diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/SSSOMParser.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/SSSOMParser.html index d380f98415..923f7c1fb2 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/SSSOMParser.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/SSSOMParser.html @@ -193,10 +193,12 @@

    Method Details

    parse

    public static Alignment parse(InputStream s) - throws IOException
    + throws IOException, +SSSOMFormatException
    Throws:
    IOException
    +
    SSSOMFormatException
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/Alignment.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/Alignment.html index 5bfd14a25f..b26c4d7c25 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/Alignment.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/Alignment.html @@ -60,7 +60,11 @@

    de.uni_mannheim.informatik.dws.melt.matching_eval

     
    - + +
     
    + +
     
    +
     
     
    @@ -285,6 +289,29 @@

    Uses of +

    Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator

    +
    Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator that return types with arguments of type Alignment
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    + +
    EvaluatorRelationTypePrediction.getConfusionMap(ExecutionResult r)
    +
     
    +
    +
    Method parameters in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator with type arguments of type Alignment
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    + + +
     
    +
    + + +
  • Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm

    @@ -406,6 +433,56 @@

    Uses of +

    Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation

    + +
    +
    Modifier and Type
    +
    Field
    +
    Description
    + +
    CMRelation.cm
    +
     
    +
    + +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    static Alignment
    +
    CMRelationMetric.enhanceAlignment(URI kgOne, + URI kgTwo, + URI alignment)
    +
     
    +
    static Alignment
    +
    CMRelationMetric.enhanceAlignment(org.apache.jena.rdf.model.Model kgOne, + org.apache.jena.rdf.model.Model kgTwo, + Alignment alignment)
    +
     
    +
    + +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    static Alignment
    +
    CMRelationMetric.enhanceAlignment(org.apache.jena.rdf.model.Model kgOne, + org.apache.jena.rdf.model.Model kgTwo, + Alignment alignment)
    +
     
    +
    + +
    +
    Modifier
    +
    Constructor
    +
    Description
    +
     
    + +
     
    +
    +

    +
  • +
  • Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking

    @@ -585,6 +662,14 @@

    Uses of Modifier and Type

  • Method
    Description
    +
    +
    AlignmentClosureRefiner.refineAlignment(org.apache.jena.rdf.model.Model kgOne, + org.apache.jena.rdf.model.Model kgTwo, + Alignment alignment)
    +
     
    + +
    RelationTypeRefiner.refineMapping(Alignment originalAlignment)
    +
     
    TypeRefiner.refineMapping(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, @@ -598,6 +683,14 @@

    Uses of Modifier and Type

    Method
    Description
    +
    +
    AlignmentClosureRefiner.refineAlignment(org.apache.jena.rdf.model.Model kgOne, + org.apache.jena.rdf.model.Model kgTwo, + Alignment alignment)
    +
     
    + +
    RelationTypeRefiner.refineMapping(Alignment originalAlignment)
    +
     
    TypeRefiner.refineMapping(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, @@ -980,18 +1073,35 @@

    Uses of Filters the alignment based on similar hosts.

    -
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, +
    BadHostsFilter.filter(String expectedSourceHost, + String expectedTargetHost, + Alignment inputAlignment, + boolean strict)
    +
    +
    Filters the alignment based on similar hosts.
    +
    +
    static Alignment
    +
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
    -
    +
    Filters the alignment based on similar hosts in a non strict mode (if the host of source or target in a correspondence can not be determined, then the correspondence is added to the filtered alignment).
    -
    static Alignment
    -
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, +
    static Alignment
    +
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, boolean strict)
    +
    +
    Filters the alignment based on similar hosts.
    +
    +
    static Alignment
    +
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + boolean strict, + Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction)
    Filters the alignment based on similar hosts.
    @@ -1121,18 +1231,35 @@

    Uses of Filters the alignment based on similar hosts.

    -
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, +
    BadHostsFilter.filter(String expectedSourceHost, + String expectedTargetHost, + Alignment inputAlignment, + boolean strict)
    +
    +
    Filters the alignment based on similar hosts.
    +
    +
    static Alignment
    +
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
    -
    +
    Filters the alignment based on similar hosts in a non strict mode (if the host of source or target in a correspondence can not be determined, then the correspondence is added to the filtered alignment).
    -
    static Alignment
    -
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, +
    static Alignment
    +
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, boolean strict)
    +
    +
    Filters the alignment based on similar hosts.
    +
    +
    static Alignment
    +
    BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + boolean strict, + Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction)
    Filters the alignment based on similar hosts.
    @@ -1534,15 +1661,20 @@

    Uses of Field

    Description
    -
    ForwardAlwaysMatcher.alignmentToBeUsed
    +
    AddAlignmentMatcher.alignmentToBeUsed
    -
    Alignment to be returned.
    +
    Alignment to be added.
    -
    ForwardMatcher.alignmentToBeUsed
    +
    ForwardAlwaysMatcher.alignmentToBeUsed
    Alignment to be returned.
    + +
    ForwardMatcher.alignmentToBeUsed
    +
    +
    Alignment to be returned.
    +
    +
    AddAlignmentExtensions.match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties)
    +
     
    + +
    AddAlignmentMatcher.match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties)
    +
     
    +
    AdditionalConfidenceByFunction.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, @@ -1684,6 +1828,18 @@

    Uses of Generates the weka instances which can be used for training a model .

    +
    AddAlignmentExtensions.match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties)
    +
     
    + +
    AddAlignmentMatcher.match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties)
    +
     
    +
    AdditionalConfidenceByFunction.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, @@ -1788,23 +1944,28 @@

    Uses of Constructor

    Description
     
    -
    ForwardAlwaysMatcher(Alignment alignmentToBeUsed)
    +
    AddAlignmentMatcher(Alignment alignmentToBeUsed)
    Constructor
     
    -
    ForwardMatcher(Alignment alignmentToBeUsed)
    +
    ForwardAlwaysMatcher(Alignment alignmentToBeUsed)
    Constructor
     
    - -
     
    +
    ForwardMatcher(Alignment alignmentToBeUsed)
    +
    +
    Constructor
    +
     
    -
    MachineLearningWEKAFilter(Alignment trainingAlignment, + +
     
    +
     
    +
    MachineLearningWEKAFilter(Alignment trainingAlignment, int crossValidationNumber, int numberOfParallelJobs)
    -
     
    +
     
    @@ -2465,6 +2626,18 @@

    Uses of Method

    Description
    +
    LLMBinaryFilter.match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties)
    +
     
    + +
    LLMChooseGivenEntityFilter.match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties)
    +
     
    +
    SentenceTransformersMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, @@ -2484,12 +2657,6 @@

    Uses of Alignment inputAlignment, Properties properties)

     
    - -
    TransformersMatcher.match(org.apache.jena.ontology.OntModel source, - org.apache.jena.ontology.OntModel target, - Alignment inputAlignment, - Properties properties)
    -
     
    @@ -2497,7 +2664,7 @@

    Uses of Method

    Description
    -
    TransformersFilter.createPredictionFile(org.apache.jena.ontology.OntModel source, +
    LLMBinaryFilter.createPredictionFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment predictionAlignment, File outputFile, @@ -2505,35 +2672,62 @@

    Uses of
    Create the prediction file which is a CSV file with two columns.The first column is the text from the left resource and the second column is the text from the right resource.

    - -
    TransformersBaseFineTuner.createTrainingFile(org.apache.jena.ontology.OntModel source, + +
    TransformersFilter.createPredictionFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, - Alignment trainingAlignment)
    + Alignment predictionAlignment, + File outputFile, + boolean append)
    +
    Create the prediction file which is a CSV file with two columns.The first column is the text from the left resource and the second column is the text from the right resource.
    +
    + +
    TransformersBaseFineTuner.createTrainingFile(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment trainingAlignment)
    +
    Creates a new file and writes all correspondences as textual data to it.
    - -
    SentenceTransformersMatcher.match(org.apache.jena.ontology.OntModel source, +
    void
    +
    SentenceTransformersPredicate.init(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties parameters)
    +
     
    +
    void
    +
    SentenceTransformersPredicateInputAlignment.init(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
     
    -
    TransformersBaseFineTuner.match(org.apache.jena.ontology.OntModel source, +
    LLMBinaryFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
    -
    -
    This method does only fine tune the model and does not match any entities.
    -
    +
     
    -
    TransformersFilter.match(org.apache.jena.ontology.OntModel source, +
    LLMChooseGivenEntityFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
     
    -
    TransformersMatcher.match(org.apache.jena.ontology.OntModel source, +
    SentenceTransformersMatcher.match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties parameters)
    +
     
    + +
    TransformersBaseFineTuner.match(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment inputAlignment, + Properties properties)
    +
    +
    This method does only fine tune the model and does not match any entities.
    +
    + +
    TransformersFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
    @@ -3114,105 +3308,110 @@

    Uses of
    Copies extensions from correspondences in the otherAlignment to this alignment.

    - -
    AlignmentSerializer.getXmlIntro(Alignment alignment)
    + +
    Alignment.createOrder(Alignment alignment)
    +
    Creates a deterministic order of correspondences.
    +
    +
    private static String
    +
    AlignmentSerializer.getXmlIntro(Alignment alignment)
    +
    XML header.
    -
    static Alignment
    -
    Alignment.intersection(Alignment alignment_1, +
    static Alignment
    +
    Alignment.intersection(Alignment alignment_1, Alignment alignment_2)
    -
    +
    Create the intersection between the two given alignments.
    -
    static void
    -
    AlignmentParser.parse(InputStream s, +
    static void
    +
    AlignmentParser.parse(InputStream s, Alignment m)
    -
     
    -
    static String
    -
    AlignmentSerializer.serialize(Alignment alignment)
    -
    +
     
    +
    static String
    +
    AlignmentSerializer.serialize(Alignment alignment)
    +
    Serializes an alignment as String.
    -
    static void
    -
    AlignmentSerializer.serialize(Alignment alignment, +
    static void
    +
    AlignmentSerializer.serialize(Alignment alignment, File file)
    -
    +
    Method to write the specified alignment to the specified file in the default XML format.
    -
    static void
    -
    AlignmentSerializer.serialize(Alignment alignment, +
    static void
    +
    AlignmentSerializer.serialize(Alignment alignment, OutputStream stream)
    -
    -
    Method to write the specified alignment to the specified outputstream in the default XML format.
    -
    -
    static String
    -
    SSSOMSerializer.serialize(Alignment alignment)
    -
    Serializes an alignment as String.
    +
    Method to write the specified alignment to the specified outputstream in the default XML format.
    static String
    -
    SSSOMSerializer.serialize(Alignment alignment, - boolean includeNonSSSOMAttributes)
    +
    SSSOMSerializer.serialize(Alignment alignment)
    Serializes an alignment as String.
    -
    static void
    -
    SSSOMSerializer.serialize(Alignment alignment, - File file)
    +
    static String
    +
    SSSOMSerializer.serialize(Alignment alignment, + boolean includeNonSSSOMAttributes)
    -
    Method to write the specified alignment to the specified file in the SSSOM format.
    +
    Serializes an alignment as String.
    static void
    -
    SSSOMSerializer.serialize(Alignment alignment, - OutputStream stream)
    +
    SSSOMSerializer.serialize(Alignment alignment, + File file)
    Method to write the specified alignment to the specified file in the SSSOM format.
    static void
    -
    SSSOMSerializer.serialize(Alignment alignment, - OutputStream stream, - boolean includeNonSSSOMAttributes)
    +
    SSSOMSerializer.serialize(Alignment alignment, + OutputStream stream)
    Method to write the specified alignment to the specified file in the SSSOM format.
    static void
    -
    AlignmentSerializer.serializeToCSV(Alignment alignment, - File file)
    +
    SSSOMSerializer.serialize(Alignment alignment, + OutputStream stream, + boolean includeNonSSSOMAttributes)
    -
    Method to write the specified alignment to the specified file (in CSV format).
    +
    Method to write the specified alignment to the specified file in the SSSOM format.
    static void
    -
    AlignmentSerializer.serializeToCSVWithExtensions(Alignment alignment, +
    AlignmentSerializer.serializeToCSV(Alignment alignment, File file)
    Method to write the specified alignment to the specified file (in CSV format).
    -
    static Alignment
    -
    Alignment.subtraction(Alignment alignment_1, - Alignment alignment_2)
    +
    static void
    +
    AlignmentSerializer.serializeToCSVWithExtensions(Alignment alignment, + File file)
    -
    Create the subtraction between the two given alignments.
    +
    Method to write the specified alignment to the specified file (in CSV format).
    static Alignment
    -
    Alignment.switchSourceWithTarget(Alignment alignment)
    +
    Alignment.subtraction(Alignment alignment_1, + Alignment alignment_2)
    +
    Create the subtraction between the two given alignments.
    +
    +
    static Alignment
    +
    Alignment.switchSourceWithTarget(Alignment alignment)
    +
    Deprecated.
    use function reverse
    -
    static Alignment
    -
    Alignment.union(Alignment alignment_1, +
    static Alignment
    +
    Alignment.union(Alignment alignment_1, Alignment alignment_2)
    -
    +
    Create the union between the two given alignments.
    -
    private static void
    -
    SSSOMSerializer.writeMetadata(SSSOMPrefixMap prefixMap, +
    private static void
    +
    SSSOMSerializer.writeMetadata(SSSOMPrefixMap prefixMap, Alignment a, OutputStreamWriter writer, boolean includeNonSSSOMAttributes)
    -
     
    +
     
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/Correspondence.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/Correspondence.html index 10e06788dc..52eeee7631 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/Correspondence.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/Correspondence.html @@ -391,7 +391,7 @@

    Uses of Method

    Description
    -
    TransformersFilter.createPredictionFile(org.apache.jena.ontology.OntModel source, +
    LLMBinaryFilter.createPredictionFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment predictionAlignment, File outputFile, @@ -399,6 +399,27 @@

    Uses of
    Create the prediction file which is a CSV file with two columns.The first column is the text from the left resource and the second column is the text from the right resource.

    + +
    TransformersFilter.createPredictionFile(org.apache.jena.ontology.OntModel source, + org.apache.jena.ontology.OntModel target, + Alignment predictionAlignment, + File outputFile, + boolean append)
    +
    +
    Create the prediction file which is a CSV file with two columns.The first column is the text from the left resource and the second column is the text from the right resource.
    +
    + +
    LLMChooseGivenEntityFilter.getList(Iterable<Correspondence> a)
    +
     
    +
    + +
    +
    Modifier and Type
    +
    Method
    +
    Description
    + +
    LLMChooseGivenEntityFilter.getList(Iterable<Correspondence> a)
    +
     
    @@ -650,6 +671,16 @@

    Uses of static Comparator<Correspondence>

    Correspondence.comparingByConfidence()
     
    + +
    Alignment.createOrder(Alignment alignment)
    +
    +
    Creates a deterministic order of correspondences.
    +
    + +
    Alignment.createOrder(List<Correspondence> alignment)
    +
    +
    Creates a deterministic order of correspondences.
    +
     
    @@ -711,6 +742,17 @@

    Uses of AlignmentSerializer.getXmlMappingCellMultiLine(Correspondence cell)

     
    +
    Method parameters in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api with type arguments of type Correspondence
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    + +
    Alignment.createOrder(List<Correspondence> alignment)
    +
    +
    Creates a deterministic order of correspondences.
    +
    +
    Modifier
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/CorrespondenceRelation.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/CorrespondenceRelation.html index a3d106e9b1..5f5a20511f 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/CorrespondenceRelation.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/class-use/CorrespondenceRelation.html @@ -54,18 +54,62 @@

    Package
    Description
    - +
     
    - +
     
    - +
     
    - +
     
    + +
     
    + +
     
    + +
     

    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/package-use.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/package-use.html index 7f955f91ce..05d31e9306 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/package-use.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/yet_another_alignment_api/package-use.html @@ -60,9 +60,13 @@

    de.uni_mannheim.informatik.dws.melt.matching_eval

     
    - +
     
    - + +
     
    + +
     
    +
     
     
    @@ -169,6 +173,23 @@

    + +
    +
    Class
    +
    Description
    + +
    +
    Data structure to represent an Alignment.
    +
    + +
    +
    Enumeration for the relations used in a Correspondence such as "equivalence"/"=".
    +
    +
    + + +
  • @@ -195,6 +216,23 @@

    + +
    +
    Class
    +
    Description
    + +
    +
    Data structure to represent an Alignment.
    +
    + +
    +
    Enumeration for the relations used in a Correspondence such as "equivalence"/"=".
    +
    +
    +

    +
  • +
  • @@ -286,6 +324,10 @@

    Data structure to represent an Alignment.

    + +
    +
    Enumeration for the relations used in a Correspondence such as "equivalence"/"=".
    +
  • @@ -727,12 +769,16 @@

    SSSOMEntityType

     
    - -
     
    - + +
    +
    Exception representing a error when data does not fit to SSSOM schema
    +
    +
     
    - +
     
    + +
     
    diff --git a/javadoc_latest/element-list b/javadoc_latest/element-list index fe52bc0e1a..42ca52745d 100644 --- a/javadoc_latest/element-list +++ b/javadoc_latest/element-list @@ -17,6 +17,7 @@ de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.explainer de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.alignmentanalyzer de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm +de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance diff --git a/javadoc_latest/index-all.html b/javadoc_latest/index-all.html index bf55ebeeeb..c766c7285d 100644 --- a/javadoc_latest/index-all.html +++ b/javadoc_latest/index-all.html @@ -195,10 +195,43 @@

    A

    Adds extension values.
    +
    AddAlignmentExtensions - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel
    +
    +
    Adds the provided extensions to the alignment when the matcher is executed.
    +
    +
    AddAlignmentExtensions(Object...) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
    +
    +
    List the Extensions as key1, value1, key2, value2 etc.
    +
    +
    AddAlignmentExtensions(Map<Object, Object>) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
    +
     
    +
    AddAlignmentMatcher - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel
    +
    +
    This is a simple matcher that adds a given alignment to the inputAlignment.
    +
    +
    AddAlignmentMatcher() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    +
    +
    Constructor + Alignment to be forwarded must be given in match operation.
    +
    +
    AddAlignmentMatcher(Alignment) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    +
    +
    Constructor
    +
    +
    AddAlignmentMatcher(File) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    +
    +
    Constructor
    +
    +
    AddAlignmentMatcher(String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    +
    +
    Constructor
    +
    addAll(Counter<T>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.Counter
    Adds another counter to this counter.
    +
    addAll(TransformersArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
    +
     
    addAll(Iterable<Correspondence>, String, String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util.AnalyticalAlignmentInformation
    Add multiple cells that have the same feature value.
    @@ -217,6 +250,8 @@

    A

    addAll(Map<? extends String, ? extends String>) - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMPrefixMap
     
    +
    addAll(Map<String, Object>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
    +
     
    addAllTransformersViaServiceRegistry() - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.TypeTransformerRegistry
     
    addAllTransformersViaServiceRegistry(ClassLoader) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.TypeTransformerRegistry
    @@ -347,6 +382,11 @@

    A

    Add an additional function with confidence key.
    +
    addGenerationArgument(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Add parameters which are passed to the + generate function of transformers library.
    +
    addIn(AgonyGraphEdge) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyGraphNode
     
    addInformationToUnion - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MergeExecutor
    @@ -415,6 +455,12 @@

    A

     
    addLiteralContained(ProcessedLiteral) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.ProcessedLiteral
     
    +
    addLoadingArgument(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Can add any parameter which are passed to the from_pretrained method.
    +
    +
    addLoadingArguments(TransformersArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
     
    addMatcher(Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.multisource.MultiSourcePipelineSequential
     
    addMatcherMetricTableOnlyMatcher() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DashboardBuilder
    @@ -431,6 +477,10 @@

    A

     
    addMetricTableSelectedAndMatcher() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DashboardBuilder
     
    +
    addModelInformation(Model, Map<String, Set<String>>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
     
    +
    addModelInformation(Model, Map<String, Set<String>>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    addModelToRequest(HttpGet, String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    Given a path to a model or vector file, this method determines whether it is a model or a vector file and @@ -496,6 +546,8 @@

    A

    Constructor with requires the recall matcher
    +
    addNegativeWord(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    addNeighboursToCorrespondence - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    addNodes(List<T>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.ComputeErrDegree
    @@ -532,7 +584,7 @@

    A

     
    addParam(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SearchSpace
     
    -
    addParameter(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    +
    addParameter(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
     
    addParameter(String, Object...) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning.GridSearch
    @@ -567,6 +619,8 @@

    A

     
    AddPositivesWithReference(double, int) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.matchers.AddPositivesWithReference
     
    +
    addPositiveWord(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    addPrecisionRecallScatterPlot() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DashboardBuilder
     
    addRefinementToNewSet(Set<Refiner>, Refiner) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.ExecutionResult
    @@ -575,6 +629,8 @@

    A

    addResource(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.Neighbours
     
    +
    addResourceFilter(Class<? extends SentenceTransformersPredicate>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    +
     
    addResultPerMatcher() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DashboardBuilder
     
    addResultPerTestCase() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DashboardBuilder
    @@ -668,6 +724,8 @@

    A

     
    addTrackTestcaseSunburst() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DashboardBuilder
     
    +
    addTrainingArgument(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
     
    addTrainingArgument(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
    Adds a training argument for the transformers trainer.
    @@ -869,6 +927,12 @@

    A

    AlignmentAndParameters(Object, Object) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.AlignmentAndParameters
     
    +
    AlignmentClosureRefiner - Class in de.uni_mannheim.informatik.dws.melt.matching_eval.refinement
    +
    +
    This refiner will create the closure of the system and reference alignment.
    +
    +
    AlignmentClosureRefiner() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    alignmentDataCube - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util.AlignmentsCube
    Internal, wrapped data structure.
    @@ -936,6 +1000,10 @@

    A

     
    AlignmentServer() - Constructor for enum de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.DefaultExtensions.AlignmentServer
     
    +
    alignmentToBeUsed - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    +
    +
    Alignment to be added.
    +
    alignmentToBeUsed - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.ForwardAlwaysMatcher
    Alignment to be returned.
    @@ -1138,7 +1206,7 @@

    A

     
    AnonymousNodeFilter - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter
    -
    This filter removes correspondences where the source or target has not the same host of the OntModels.
    +
    This filter removes correspondences where the source or target is a blank node.
    AnonymousNodeFilter() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.AnonymousNodeFilter
    @@ -1384,6 +1452,10 @@

    B

    Constructor
    +
    BadHostsFilter(boolean, Function<OntModel, String>) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
    +
    Constructor
    +
    BagOfWords - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel
    Data structure keeps the notion of the original ordering but the equals method will ignore the ordering
    @@ -1506,8 +1578,14 @@

    B

    Return a set of elements where the frequency is between the given min and max arguments (greater or equal to min and less or equal to max).
    +
    bfs(Map<String, Set<String>>, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
     
    +
    bfs(Map<String, Set<String>>, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    Biblio() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_data.TrackRepository.SystematicBenchmark.Biblio
     
    +
    BINARY_ADDITIONAL_CONFIDENCE_KEY - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    bind(int, int, int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyGraph
     
    bind(AgonyGraphEdge, AgonyGraphNode, AgonyGraphNode) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyGraph
    @@ -1516,6 +1594,8 @@

    B

     
    BioML() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_data.TrackRepository.BioML
     
    +
    bla(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelation
    +
     
    BOOLEAN - Enum constant in enum de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.SetSimilarity
    Returns 1 if intersection is not empty and 0 if it is empty.
    @@ -1965,6 +2045,8 @@

    C

    This method flushes and closes global printers.
    +
    CLOSURE_REFINER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    cls - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.DefaultHashMap
     
    cluster - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.Clustering
    @@ -2042,8 +2124,18 @@

    C

    ClusterUtil() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.ClusterUtil
     
    +
    cm - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelation
    +
     
    cmMetric - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage.ResultsPageUtil
     
    +
    CMRelation - Class in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation
    +
     
    +
    CMRelation(Map<Map.Entry<CorrespondenceRelation, CorrespondenceRelation>, Alignment>) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelation
    +
     
    +
    CMRelationMetric - Class in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation
    +
     
    +
    CMRelationMetric() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
     
    collectStats - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena.TdbUtil.DestinationGraph
     
    combine(Alignment) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.ConfidenceCombiner
    @@ -2186,6 +2278,8 @@

    C

     
    compute(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm.ConfusionMatrixMetric
     
    +
    compute(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
     
    compute(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.Metric
     
    compute(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking.RankingMetric
    @@ -2383,9 +2477,9 @@

    C

     
    ConfidenceRefiner(double) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ConfidenceRefiner
     
    -
    config - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
    +
    config - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
     
    -
    config - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    +
    config - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
     
    config - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea.OpenEAMatcher
     
    @@ -2775,6 +2869,8 @@

    C

     
    createDummyFile(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_assembly.SealsDescriptorHandler
     
    +
    createEmptyModel(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    createExcludeNeighboursFunction(Set<Property>, Function<Literal, Object>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    createFileWithRandomNumber(File, String, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.FileUtil
    @@ -2837,8 +2933,20 @@

    C

     
    createOntology() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena.multisource.MatcherMultiSourceYAAAJena
     
    +
    createOrder(Alignment) - Static method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
    +
    +
    Creates a deterministic order of correspondences.
    +
    +
    createOrder(List<Correspondence>) - Static method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
    +
    +
    Creates a deterministic order of correspondences.
    +
    createOrUpdateFile(Project, RepositoryFileApi, String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_maven_plugin.PrepareHobbitGitlab
     
    +
    createPredictionFile(OntModel, OntModel, Alignment, File, boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
    +
    Create the prediction file which is a CSV file with two columns.The first column is the text from the left resource and the second column is the text from the right resource.
    +
    createPredictionFile(OntModel, OntModel, Alignment, File, boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypePredictor
     
    createPredictionFile(OntModel, OntModel, Alignment, File, boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersFilter
    @@ -2877,7 +2985,7 @@

    C

    Creates a new TDB storage for the target KG but only if the model is large (which can be further defined by the number of triples as the parameter).
    -
    createTextFile(OntModel, File, ResourcesExtractor, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    +
    createTextFile(Iterator<? extends OntResource>, File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
     
    createTrainingFile(OntModel, OntModel, Alignment) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBaseFineTuner
    @@ -2915,6 +3023,8 @@

    C

    csvFormat - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorCSV
     
    +
    csvFormat - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    csvSupplier - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DashboardBuilder
     
    cudaVisibleDevices - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
    @@ -2957,6 +3067,10 @@

    C

    cutNgramPosition - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.labelToConcept.nGramTokenizers.NgramLeftToRightTokenizer
     
    +
    cutSize(double) - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
    +
    +
    Returns only the size of the new alignment which contains only correspondences above or equal the given threshold (it will not modify the current object).
    +
    cvc(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.nlp.PorterStemmer
     
    cycleDetection - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph.CycleRemoval
    @@ -3198,6 +3312,8 @@

    D

     
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm - package de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm
     
    +
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation - package de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation
    +
     
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking - package de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking
     
    de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity - package de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity
    @@ -3383,6 +3499,10 @@

    D

    debugFile - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel.MatchPropBasedOnInstances
     
    +
    debugFile - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    If set to a existing file, this class writes additional debug information to the corresponding file.
    +
    decimalSymbols - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage.ResultsPageUtil
     
    decreaseCount() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyNode
    @@ -3581,6 +3701,8 @@

    D

    Detect communities in this graph.
    +
    determineAggregatedAlignmentExtensionValuesToWriteForCSV(Set<ExecutionResult>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorCSV
    +
     
    determineAlignmentExtensionValuesToWriteForCSV(Map<String, Object>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorCSV
    Given the existing extension values of an alignment, determine what to write in the CSV file.
    @@ -3865,6 +3987,10 @@

    E

    A set of English stopwords.
    +
    enhanceAlignment(URI, URI, URI) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
     
    +
    enhanceAlignment(Model, Model, Alignment) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
     
    enteringFunction - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph.CycleDetection.StackNode
     
    ENTITY1 - Static variable in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.AlignmentHandler
    @@ -3935,8 +4061,12 @@

    E

     
    equals(Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.ExecutionResult
     
    +
    equals(Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    equals(Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ConfidenceRefiner
     
    +
    equals(Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
     
    equals(Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ResidualRefiner
     
    equals(Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.TypeRefiner
    @@ -4170,6 +4300,10 @@

    E

    Constructor
    +
    EvaluatorRelationTypePrediction - Class in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator
    +
     
    +
    EvaluatorRelationTypePrediction(ExecutionResultSet) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    evaluators - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorPipeline
     
    EvaluatorUtil - Class in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util
    @@ -4422,6 +4556,8 @@

    E

     
    ExtensionMap() - Constructor for class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.ExtensionMap
     
    +
    extensions - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
    +
     
    extensions - Variable in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
    Extended attributes.
    @@ -4491,10 +4627,16 @@

    E

    Returns a set of descriptions.
    +
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
     
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorMultipleProperties
     
    +
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
     
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorProperty
     
    +
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorSet
     
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorShortAndLongTexts
    @@ -4505,6 +4647,8 @@

    E

     
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorUseLongestLiteralOrFragment
     
    +
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
     
    extract(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractorsMap.TextExtractorMapSet
     
    extract(Resource) - Method in interface de.uni_mannheim.informatik.dws.melt.matching_jena.LiteralExtractor
    @@ -4527,6 +4671,8 @@

    E

     
    extractcycle(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.Agony
     
    +
    extractFragment(Resource) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
     
    extractionProblem - Variable in class de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers.AlcomoFilter
     
    extractMainClass() - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.receiver.MainMatcherClassExtractor
    @@ -4535,6 +4681,8 @@

    E

     
    extractNumber(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.wrapper.ParisMatcher.FileNumberDescendingComparator
     
    +
    extractOne(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
     
    extractor - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.ManualInspection
     
    extractor - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorAllAnnotationProperties
    @@ -4545,6 +4693,10 @@

    E

     
    extractors - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorFallback
     
    +
    extractProperty(Resource, Property) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
    +
    Extract literal if language tag fits or (as fallback) literal with no language tag.
    +
    extractStopwords(Iterable<? extends Resource>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.StopwordExtraction
     
    extractStopwords(Iterator<? extends Resource>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.StopwordExtraction
    @@ -4708,6 +4860,10 @@

    F

    filter(Alignment, OntModel, OntModel) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.ConfidenceFilter
     
    +
    filter(String, String, Alignment, boolean) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
    +
    Filters the alignment based on similar hosts.
    +
    filter(OntModel, OntModel, Alignment) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.AnonymousNodeFilter
    Filters the alignment based on similar hosts.
    @@ -4723,6 +4879,10 @@

    F

    Filters the alignment based on similar hosts.
    +
    filter(OntModel, OntModel, Alignment, boolean, Function<OntModel, String>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
    +
    Filters the alignment based on similar hosts.
    +
    Filter - Interface in de.uni_mannheim.informatik.dws.melt.matching_base
    Interface for filters.
    @@ -5086,6 +5246,8 @@

    G

    Generates test cases where the input alignment of the test cases is filled with a fraction of the reference alignment.
    +
    generateWordsToDetect(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    GenericMatcherCaller - Class in de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer
    This matcher caller expects some matcher object and all other paramters as objects as well @@ -5321,6 +5483,8 @@

    G

    Given a class return all superclasses and interfaces except the Object class (which would be too generic).
    +
    getAllUsedDistinctRelations() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    getAmountOfDistinctElements() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.util.Counter
    Deprecated.
    @@ -5449,6 +5613,10 @@

    G

    Returns the canonical path (resolved symlink, and relative paths) of a file if possible.
    +
    getCanonicalPathNonExistent(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    +
    +
    Obtain the canonical model path.
    +
    getChartType() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DcjsElement
     
    getChild() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyGraphEdge
    @@ -5559,6 +5727,8 @@

    G

    getConfigurations() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.BoundedPathMatching
     
    +
    getConfusionMap(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    getConfusionMatrix(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage.ResultsPageUtil
     
    getConfusionMatrixMetric() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorCSV
    @@ -5667,6 +5837,8 @@

    G

    Returns the CSV format used to write all CSV files.
    +
    getCsvFormat() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    getCSVRecord(OntModel, OntModel) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.matchers.AddPositivesWithReference
     
    getCudaVisibleDevices() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
    @@ -5718,6 +5890,8 @@

    G

     
    getDebugFile() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel.MatchClassBasedOnInstances
     
    +
    getDebugFile() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
     
    getDefaultConfig() - Static method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea.OpenEAMatcher
     
    getDefaultDistances(int[][]) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MergeOrder
    @@ -5933,6 +6107,8 @@

    G

    Given a map from McNemarIndividualResult to Double (=pvalue) and a track, a sub-map is created with the entries that are from that particular track.
    +
    getEnumerationLabel(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    getEpochs() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecConfiguration
     
    getErroneousReport() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.alignmentanalyzer.AlignmentAnalyzerResult
    @@ -6125,6 +6301,11 @@

    G

    Look in the cache whether a vector already exists for the given word in the given dataset.
    +
    getGenerationArguments() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Returns the arguments which can be used for the + generate function of transformers library.
    +
    getGlobal() - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.DataStore
    Get global data store instance.
    @@ -6135,6 +6316,10 @@

    G

     
    getGraph() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.LogicalGraphAndSourceIds
     
    +
    getGraph() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph.CycleDetection
    +
    +
    Return the graph which is generated by calling CycleDetection.addEdge(T, T) or CycleDetection.removeEdge(T, T).
    +
    getGraphTDB(Graph) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena.TdbUtil
     
    getGraphTDB(Model) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena.TdbUtil
    @@ -6204,6 +6389,18 @@

    G

    The port on which the matching service is avilable.
    getHostURIOfModel(OntModel) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
    +
    Extracts the host URI of the model.
    +
    +
    getHostURIOfModelByFullAnalysis(OntModel) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
     
    +
    getHostURIOfModelByPrefixOrFirstURI(OntModel) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
    +
    Extracts the host URI of the model by using the prefix of :.
    +
    +
    getHostURIOfModelBySampling(OntModel) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
     
    +
    getHostURIOfModelBySampling(OntModel, int) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
     
    getHpMutations() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersFineTunerHpSearch
    @@ -6520,12 +6717,18 @@

    G

     
    getLinksTracks(List<Track>, TextExtractor, LabelToConceptLinker, int) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.labelToConcept.LinksToFile
     
    +
    getList(Iterable<Correspondence>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    getLiteralProcessingFunction() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    getLiterals() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.Neighbours
     
    getLiterals(PropertySpecificStringProcessingMultipleReturn, Map<TextExtractor, Set<String>>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale.ScalableStringProcessingMatcher
     
    +
    getLoadingArguments() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Returns parameters which are passed to the from_pretrained method.
    +
    getLocation() - Static method in class de.uni_mannheim.informatik.dws.melt.receiver_http.Main
     
    getLog() - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.DockerStringCallback
    @@ -6794,6 +6997,10 @@

    G

     
    getModelSpec() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena.multisource.MatcherMultiSourceYAAAJena
     
    +
    getModelWithLabel(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    getModelWithResource(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    getMostSpecificDatasetIdExtractor(Track) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.multisource.ExecutorMultiSource
    Returns the most specific partitioner for a given track
    @@ -6964,6 +7171,8 @@

    G

     
    getNegatives() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecConfiguration
     
    +
    getNegativeWords() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    getNeighbours(OntModel, Individual) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    getNetwork() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.VOSClusteringTechnique
    @@ -7134,6 +7343,8 @@

    G

    getOccurringConfidences(Alignment, int, double, double) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning.ConfidenceFinder
     
    +
    getOneTextualRepresentation(Resource, Map<Resource, String>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    getOntModelFromTDB(String, OntModelSpec) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena.TdbUtil
     
    getOnto1() - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
    @@ -7180,9 +7391,9 @@

    G

     
    getParallelism() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.FamerClustering
     
    -
    getParameter(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    +
    getParameter(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
     
    -
    getParameterOrDefault(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    +
    getParameterOrDefault(String, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
     
    getParameters() - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.AlignmentAndParameters
     
    @@ -7256,6 +7467,8 @@

    G

     
    getPositionMap(List<String>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction.HungarianExtractor
     
    +
    getPositiveWords() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    getPossibleLiterals(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorForTransformers
     
    getPotential() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction.MwbNode
    @@ -7274,6 +7487,8 @@

    G

    Given a URI, this method returns the prefixed URI.
    +
    getPrefix(Map<String, String>, String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    getPrefixMap() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util.PrefixLookup
     
    getPrefixMap() - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMPrefixMap
    @@ -7286,6 +7501,8 @@

    G

     
    getProcessing() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale.PropertySpecificStringProcessingMultipleReturn
     
    +
    getPromt() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
     
    getProperties() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorMultipleProperties
     
    getProperties() - Method in class de.uni_mannheim.informatik.dws.melt.matching_validation.OntologyValidationService
    @@ -7393,8 +7610,14 @@

    G

     
    getRefinerList() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRankGroup
     
    +
    getRelation() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
     
    getRelation() - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Correspondence
     
    +
    getRelationRefiner(List<CorrespondenceRelation>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    +
    getRelationsFromCM(Map<Map.Entry<CorrespondenceRelation, CorrespondenceRelation>, Alignment>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    getRelationsUsed() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.alignmentanalyzer.AlignmentAnalyzerResult
    Returns a set of the different mapping relations (e.g.
    @@ -7436,6 +7659,8 @@

    G

    getResourceFeatures(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.explainer.ExplainerResourceType
     
    +
    getResourceFilters() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    +
     
    getResourcesDirectory() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
     
    getResourcesDirectoryPath() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    @@ -7533,6 +7758,8 @@

    G

     
    getSeparatedLiterals(ExtendedIterator<RDFNode>, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.explainer.ExplainerResourceUtil
     
    +
    getSerializationFormat() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    getSerializedTreeFile() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MultiSourceDispatcherIncrementalMerge
    Return the file where the serialzed merge tree is stored.
    @@ -7707,6 +7934,10 @@

    G

     
    getSummedRuntimeOfResults(Set<ExecutionResult>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorCSV
     
    +
    getSuperclassLabels(Resource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
    +
    Returns for each superclass at maximum one label.
    +
    getSynonyms(String, Language) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.wikidata.WikidataKnowledgeSource
    Language-bound synonymy retrieval.
    @@ -8137,6 +8368,10 @@

    G

    Return the fragment of the URI which is the part after the last hashtag (#) or last slash(/).
    +
    getURIHosts(Iterator<? extends OntResource>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
     
    +
    getURIHostSample(Iterator<? extends OntResource>, int) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
     
    getURIlabelMap(ExtendedIterator<? extends OntResource>, TextExtractor) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher.BackgroundMatcherTools
    Creates a map of the form URI -> set<labels>.
    @@ -8259,6 +8494,8 @@

    G

    getWindowSize() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecConfiguration
     
    +
    getWordsToDetect() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    getWorkingDirectory() - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process.ExternalProcess
    Returns the working directory which will be used when starting a new process.
    @@ -8400,8 +8637,12 @@

    H

     
    hashCode() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.ExecutionResult
     
    +
    hashCode() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    hashCode() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ConfidenceRefiner
     
    +
    hashCode() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
     
    hashCode() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ResidualRefiner
     
    hashCode() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.TypeRefiner
    @@ -8548,6 +8789,10 @@

    H

    If true, then all negatives are of the same type e.g.
    +
    hostOfModelFunction - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.BadHostsFilter
    +
    +
    the function to extract the host URI of a model.
    +
    hostPort - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
     
    HP_MESH - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_data.TrackRepository.Phenotype.V2017
    @@ -8739,6 +8984,24 @@

    I

     
    INC - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.nlp.PorterStemmer
     
    +
    includeMoreVariations(String...) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    This functions add more word variations to the set of words.
    +
    +
    includeMoreVariations(Set<String>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    This functions add more word variations to the set of words.
    +
    +
    includePrefixesInModel - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    includeQuotes - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
     
    +
    includeQuotes - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
     
    +
    includeRelation - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
    +
    If true, the refined results contains only the provided relation.
    +
    INCOMPAT - Enum constant in enum de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.CorrespondenceRelation
    Incompatiple relation meaning that two concepts should not be matched.
    @@ -8781,6 +9044,10 @@

    I

     
    init(boolean, boolean, boolean, boolean) - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
     
    +
    init(OntModel, OntModel, Alignment, Properties) - Method in interface de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicate
    +
     
    +
    init(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment
    +
     
    initagony() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.Agony
     
    initAlternatives() - Static method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMSerializer
    @@ -8789,7 +9056,7 @@

    I

     
    initialiseResourceExtractor() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    -
    Initialises the resource extractors such that classes, datatypeproperties, objectproperties, all other properties, +
    Initialises the resource extractors such that classes, datatypeproperties, objectproperties, all other properties (rdf properties - not owl), and instances are matched if the properties suggests to do so.
    initialize() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.wiktionary.WiktionaryKnowledgeSource
    @@ -9050,6 +9317,10 @@

    I

    isConstructorParameter(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning.GridSearch
     
    +
    isContained(Model, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
     
    +
    isContained(Model, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    isCopyAlignmentFiles() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorCSV
     
    isCrossIndexMatch() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale.ScalableStringProcessingMatcher
    @@ -9238,6 +9509,12 @@

    I

    Checks whether there is an entry for the specified word and dataset in the buffer.
    +
    isIncludePrefixesInModel() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    isIncludeRelation() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
    +
    Returns if the relation is included or excluded from the refined result.
    +
    isInDictionary(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.babelnet.BabelNetKnowledgeSource
    The word will be only looked up in the English BabelNet.
    @@ -9464,6 +9741,10 @@

    I

    Check whether the given relation are contained in this alignment.
    +
    isRemoveNewlines() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    isRemovePrefixDefition() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    isRemoveUnusedJenaModels() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MultiSourceDispatcherIncrementalMerge
    Returns true if OntModels are removed.
    @@ -9749,6 +10030,8 @@

    I

     
    isUseIngoing() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    +
    isUseLabelInsteadOfResource() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    isUseLiteral() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    isUseOutgoing() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
    @@ -9811,6 +10094,10 @@

    I

    If true, then it will samples random elements which can also appear multiple times in different correspondences.
    +
    isWordForcer() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
     
    +
    isWordStopper() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
     
    ITALIAN - Enum constant in enum de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.Language
     
    iterableSize(Iterable<?>) - Static method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
    @@ -9922,9 +10209,9 @@

    J

     
    JSON_MAPPER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.Counter
     
    -
    JSON_MAPPER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
    +
    JSON_MAPPER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
     
    -
    JSON_MAPPER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    +
    JSON_MAPPER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
     
    JSON_MAPPER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea.OpenEAConfiguration
    @@ -9947,6 +10234,14 @@

    K

    Map of URIs (String) to double array.
    +
    keepSourceEntity(OntResource) - Method in interface de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicate
    +
     
    +
    keepSourceEntity(OntResource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment
    +
     
    +
    keepTargetEntity(OntResource) - Method in interface de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicate
    +
     
    +
    keepTargetEntity(OntResource) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment
    +
     
    key - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.MinMax
     
    KG_TRACK_EXTRACTOR - Static variable in interface de.uni_mannheim.informatik.dws.melt.matching_base.multisource.DatasetIDExtractor
    @@ -10058,6 +10353,14 @@

    L

     
    LABEL_NAMES - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.PropertyVocabulary
     
    +
    LABEL_PROPERTIES - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
     
    +
    labelExtractor - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
     
    +
    labelExtractor - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    labelExtractor - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
     
    labelOfMergeTask - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MergeExecutor
     
    labels - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MergeOrder
    @@ -10098,6 +10401,8 @@

    L

    Laboratory() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_data.TrackRepository.Laboratory
     
    +
    langTagMatch(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
     
    Language - Enum in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external
    Universal language enum for all background knowledge data sets.
    @@ -10106,6 +10411,8 @@

    L

     
    LANGUAGE_PAIRS - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_data.TrackRepository.Multifarm
     
    +
    languageCode - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
     
    LARGE_BIO_TRACK_EXTRACTOR - Static variable in interface de.uni_mannheim.informatik.dws.melt.matching_base.multisource.DatasetIDExtractor
    Extractor for the Knowledge graph track available at OAEI.
    @@ -10178,6 +10485,8 @@

    L

    STRING the validity range of the correspondence.
    +
    lineByLineTranslation - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
     
    lineCount(File) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.FileUtil
    Determines the count of lines in a file in a fast way.
    @@ -10469,6 +10778,42 @@

    L

    literals - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.Neighbours
     
    +
    LLMBase - Class in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    +
    +
    This filter asks a LLM which entity of the source fits best to an entity of the target.
    +
    +
    LLMBase(TextExtractorMap, String, String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    +
    LLMBase(TextExtractor, String, String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    +
    LLMBinaryFilter - Class in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    +
    +
    This filter asks a LLM if a given correspondence is correct or not.
    +
    +
    LLMBinaryFilter(TextExtractorMap, String, String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    +
    LLMBinaryFilter(TextExtractor, String, String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    +
    LLMChooseGivenEntityFilter - Class in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    +
    +
    This filter asks the LLM given a source entity which is the best target entity (out of the ones in the alignment).
    +
    +
    LLMChooseGivenEntityFilter(TextExtractorMap, String, String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    +
    LLMChooseGivenEntityFilter(TextExtractor, String, String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
    +
    Constructor with all required parameters and default values for optional parameters (can be changed by setters).
    +
    load(File) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.multisource.EvaluatorMultiSourceBasic
     
    load(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.Clustering
    @@ -10584,6 +10929,10 @@

    L

    Knowledge Graph Track of the OAEI.
    +
    loadingArguments - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Can add any parameter which are passed to the from_pretrained method.
    +
    loadJSONObject(File, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.multisource.EvaluatorMultiSourceBasic
     
    loadMeltProperties() - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.MeltUtil
    @@ -10756,6 +11105,8 @@

    L

    Default logger.
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.explainer.ExplainerResourceProperty
    default logger
    @@ -10770,6 +11121,8 @@

    L

    Default Logger
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    +
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking.RankingMetric
     
    LOGGER - Static variable in enum de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking.SameConfidenceRanking
    @@ -10838,6 +11191,8 @@

    L

    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.profiling.MemoryProfiling
     
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ResidualRefiner
    Default Logger
    @@ -10967,6 +11322,10 @@

    L

     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel.MatchClassBasedOnInstances
     
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
    +
     
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    +
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AlignmentSaveMatcher
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.ConfidenceCombiner
    @@ -11045,6 +11404,8 @@

    L

     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.ManualInspection
     
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.WiktionarySynsetCSV
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.WriteNumpy
    @@ -11083,6 +11444,10 @@

    L

    Default logger.
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypeFineTuner
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypePredictor
    @@ -11091,6 +11456,8 @@

    L

     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
     
    +
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
    +
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBaseFineTuner
    @@ -11103,8 +11470,6 @@

    L

     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
     
    -
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    -
     
    LOGGER - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea.OpenEAConfiguration
    Default Logger.
    @@ -11682,6 +12047,10 @@

    M

     
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel.MatchPropBasedOnInstances
     
    +
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
    +
     
    +
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    +
     
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AdditionalConfidenceByFunction
     
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AlignmentSaveMatcher
    @@ -11733,6 +12102,10 @@

    M

     
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.MachineLearningScikitFilter
     
    +
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    +
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypePredictor
     
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    @@ -11743,8 +12116,6 @@

    M

    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersFilter
     
    -
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersMatcher
    -
     
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea.OpenEAMatcher
     
    match(OntModel, OntModel, Alignment, Properties) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.VectorSpaceModelMatcher
    @@ -12405,6 +12776,8 @@

    M

    the ConfusionMatrixMetric to be used for evaluation
    +
    metric - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    metric - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel.MatchClassBasedOnInstances
    Metric to be used.
    @@ -12997,6 +13370,10 @@

    N

    Default value for parameter Word2VecConfiguration.negatives.
    +
    negativeWords - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
    +
    Set of negative words to use.
    +
    neighbor - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.Network
     
    Neighbours - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance
    @@ -13053,6 +13430,10 @@

    N

     
    NEWLINE - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_maven_plugin.PrepareHobbitGitlab
     
    +
    NEWLINE - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    +
    NEWLINE - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    NEWLINE - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypeFineTuner
     
    NEWLINE - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypePredictor
    @@ -13159,6 +13540,8 @@

    N

    NoOpMatcher() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.NoOpMatcher
     
    +
    noPrefixLang - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    NORMAL - Enum constant in enum de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process.QuoteState
     
    normalise(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_assembly.LibsAndBaseVersion
    @@ -13263,6 +13646,8 @@

    N

     
    normalizeOnlyCamelCaseAndUnderscore(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.StringProcessing
     
    +
    normalizeOnlyCamelCaseUnderscoreAndHyphen(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.StringProcessing
    +
     
    normalizePath(List<T>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph.CycleDetection
     
    normalizePaths(List<List<T>>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph.CycleDetection
    @@ -13632,6 +14017,12 @@

    O

    The metric to optimize during hyperparameter search.
    +
    optionallyQuote(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
     
    +
    optionallyQuote(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
     
    +
    optionallyQuote(Set<String>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
     
    orderClustersByNNodes() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.Clustering
     
    originalSystemAlignment - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.ExecutionResult
    @@ -13879,7 +14270,9 @@

    P

    The parsed reference which is initialized lazily.
    -
    parseExtensions(Object[]) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    +
    parseExtensions(Object[]) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
    +
     
    +
    parseExtensions(Object[]) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
     
    parseExtensions(Object[]) - Static method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Correspondence
     
    @@ -14123,6 +14516,10 @@

    P

     
    PORTUGUESE - Enum constant in enum de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.Language
     
    +
    positiveWords - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
    +
    Set of positive words to use.
    +
    postProcessing - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.multisource.DatasetIDExtractorUrlPattern
     
    potential - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction.MwbNode
    @@ -14165,6 +14562,10 @@

    P

    Run huggingface transformers library.
    +
    predictConfidences(File, List<Set<String>>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Run huggingface transformers library.
    +
    predictConfidencesMultiClass(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypePredictor
     
    prefix - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process.ProcessOutputInfoLogging
    @@ -14218,6 +14619,8 @@

    P

     
    printBenchmarkLog(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.hobbit.HobbitAPI
     
    +
    printCM(ExecutionResult, ConfusionMatrix, String, String, CSVPrinter) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    printFirstLinesOfFile(String, int) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.io.IOoperations
    Outputs the first view lines of a file to the console.
    @@ -14320,6 +14723,10 @@

    P

     
    projectVersion - Variable in class de.uni_mannheim.informatik.dws.melt.matching_maven_plugin.PrepareHobbitGitlab
     
    +
    promt - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    The promt to use for the LLM.
    +
    PROOF - Enum constant in enum de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.DefaultExtensions.OmvMetadata
    STRING denoting proofs of properties
    @@ -14848,20 +15255,28 @@

    R

    ReferenceMatcher(Track) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.util.ReferenceMatcher
     
    +
    refine(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    refine(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ConfidenceRefiner
     
    refine(ExecutionResult) - Method in interface de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.Refiner
    Create a new refined ExecutionResult from an ExecutionResult.
    +
    refine(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
     
    refine(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ResidualRefiner
     
    refine(ExecutionResult) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.TypeRefiner
     
    +
    refineAlignment(Model, Model, Alignment) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    REFINED - Enum constant in enum de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction.MwbInitHeuristic
    Refined heuristic - not implemented yet.
    +
    refineMapping(Alignment) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
     
    refineMapping(OntModel, OntModel, Alignment) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.TypeRefiner
    Perform the actual refinement.
    @@ -14905,6 +15320,8 @@

    R

    Related relation which connects two classes/instances.
    +
    relation - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
     
    relation - Variable in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Correspondence
     
    RELATION - Static variable in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Correspondence
    @@ -14929,6 +15346,16 @@

    R

     
    RelationTypePredictor(TextExtractor, String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypePredictor
     
    +
    RelationTypeRefiner - Class in de.uni_mannheim.informatik.dws.melt.matching_eval.refinement
    +
    +
    The relation type refiner refines all execution results in such a way that only the specified reltion type is used.
    +
    +
    RelationTypeRefiner(CorrespondenceRelation) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
     
    +
    RelationTypeRefiner(CorrespondenceRelation, boolean) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
    +
    Constructor
    +
    RelativeSubsetSizeCoefficient - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.setSimilarityMeasures
     
    RelativeSubsetSizeCoefficient() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.setSimilarityMeasures.RelativeSubsetSizeCoefficient
    @@ -15043,6 +15470,8 @@

    R

    Removes the language annotation from a string.
    +
    removeNewlines - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    removeNonAlphanumericCharacters(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.stringOperations.StringOperations
    Removes everything that is not a digit, character, space, or underscore.
    @@ -15055,6 +15484,8 @@

    R

     
    removeOut(AgonyGraphEdge) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyGraphNode
     
    +
    removePrefixDefition - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    removeReflexiveCorrespondences(Alignment) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.ReflexiveCorrespondenceFilter
    Removes all reflexive edges (which maps A to A) from an alignment.
    @@ -15077,6 +15508,14 @@

    R

     
    removeUnusedJenaModels - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MultiSourceDispatcherIncrementalMerge
     
    +
    removeUnusedPrefixes(Model) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    renderFile(File, File, String, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph.DotGraphUtil
    +
     
    +
    renderFilePng(File, File) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph.DotGraphUtil
    +
     
    +
    renderGraph(Map<T, Set<T>>, File) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph.DotGraphUtil
    +
     
    repair(File) - Static method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.AlignmentXmlRepair
    Repairs an alignment file.
    @@ -15191,6 +15630,8 @@

    R

    Names of the resource features in a list.
    +
    resourceFilters - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    +
     
    resourcesDirectory - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    The directory where the python files will be copied to.
    @@ -15671,12 +16112,30 @@

    R

    Runs a matcher which implements the IMatcherMultiSourceCaller interface.
    +
    runMatcherOnTop(ExecutionResult, Object, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.Executor
    +
    +
    Runs a matcher on top of another.
    +
    +
    runMatcherOnTop(ExecutionResult, Map<String, Object>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.Executor
    +
    +
    Runs a matcher on top of another.
    +
    +
    runMatcherOnTop(ExecutionResultSet, TestCase, String, Object, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.Executor
    +
    +
    Runs a matcher on top of another.
    +
    +
    runMatcherOnTop(ExecutionResultSet, TestCase, String, Map<String, Object>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.Executor
    +
    +
    Runs a matcher on top of another.
    +
    runMatcherOnTop(ExecutionResultSet, String, Object, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.Executor
    Runs a matcher on top of another.
    runMatcherOnTop(ExecutionResultSet, String, Map<String, Object>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.Executor
    -
     
    +
    +
    Runs a matcher on top of another.
    +
    runMatcherOnTop(ExecutionResultSetMultiSource, String, String, Object) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.multisource.ExecutorMultiSource
     
    runMetricAndPrintToFile(RankingMetric[], ExecutionResult, String, CSVPrinter) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRank
    @@ -16077,6 +16536,12 @@

    S

     
    SentenceTransformersMatcher(TextExtractor, String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
     
    +
    SentenceTransformersPredicate - Interface in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    +
     
    +
    SentenceTransformersPredicateInputAlignment - Class in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    +
     
    +
    SentenceTransformersPredicateInputAlignment() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment
    +
     
    sentenceTransformersPrediction(SentenceTransformersMatcher, File, File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    Run sentence transformers prediction.
    @@ -16091,6 +16556,10 @@

    S

    The folder in which all alignments and properties files are stored.
    +
    serializationFormat - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
    +
    The serialization format to use - more info at the corresponding jena page.
    +
    serialize() - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
    Serialize this mapping to a string.
    @@ -16181,6 +16650,8 @@

    S

     
    serialVersionUID - Static variable in class de.uni_mannheim.informatik.dws.melt.receiver_http.Main.MatcherServlet
     
    +
    serialVersionUID - Static variable in exception de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMFormatException
    +
     
    SERVER_URL - Static variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.kgvec2go.KGvec2goClient
    The URL that shall be used to perform the requests.
    @@ -16316,6 +16787,8 @@

    S

     
    setCsvFormat(CSVFormat) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorCSV
     
    +
    setCsvFormat(CSVFormat) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    setCudaVisibleDevices(int...) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
    Sets the environment variable CUDA_VISIBLE_DEVICES to select on @@ -16344,6 +16817,8 @@

    S

    setDebugFile(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel.MatchClassBasedOnInstances
     
    +
    setDebugFile(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
     
    setDefaultResultsDirectory(File) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.Evaluator
    Set the defaults results directory.
    @@ -16422,6 +16897,11 @@

    S

     
    setFreshMatcherInstance(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.seals.MatcherSealsBuilder
     
    +
    setGenerationArguments(TransformersArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Set the arguments which can be used for the + generate function of transformers library.
    +
    setGoldStandard(Alignment, DatasetIDExtractor) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MultiSourceDispatcherIncrementalMerge
     
    setGoldStandard(Object, DatasetIDExtractor) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MultiSourceDispatcherIncrementalMerge
    @@ -16458,6 +16938,8 @@

    S

     
    setImageURLProperty(Project, String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_maven_plugin.PrepareHobbitGitlab
     
    +
    setIncludePrefixesInModel(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    setInitialWaitingTimeInSeconds(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
     
    setInstanceMinConfidence(double) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel.MatchClassBasedOnInstances
    @@ -16492,6 +16974,10 @@

    S

     
    setLiteralProcessingFunction(Function<Literal, Object>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    +
    setLoadingArguments(TransformersArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Set the arguments which are passed to the from_pretrained method.
    +
    setLoss(SentenceTransformersLoss) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersFineTuner
     
    setMainclass(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_assembly.SealsDescriptorHandler
    @@ -16613,6 +17099,8 @@

    S

     
    setNegatives(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecConfiguration
     
    +
    setNegativeWords(Set<String>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    setNetwork(Network) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.VOSClusteringTechnique
     
    setNewrank(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyNode
    @@ -16691,6 +17179,8 @@

    S

     
    setPort(int) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
     
    +
    setPositiveWords(Set<String>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter
    +
     
    setPotential(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction.MwbNode
     
    setPredecessor(MwbEdge) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction.MwbNode
    @@ -16709,6 +17199,8 @@

    S

     
    setProjectjar(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_assembly.SealsDescriptorHandler
     
    +
    setPromt(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
     
    setPythonCommandBackup(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    Sets the python command programmatically.
    @@ -16735,6 +17227,10 @@

    S

     
    setRelation(CorrespondenceRelation) - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Correspondence
     
    +
    setRemoveNewlines(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    setRemovePrefixDefition(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    setRemoveUnusedJenaModels(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MultiSourceDispatcherIncrementalMerge
    If set to true, this removes OntModel/Model which are not needed anymore.
    @@ -16747,6 +17243,8 @@

    S

     
    setResourceExplainers(List<IExplainerResource>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util.AlignmentsCube
     
    +
    setResourceFilters(List<Class<? extends SentenceTransformersPredicate>>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    +
     
    setResourcesDirectory(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    Set the directory where the python files will be copied to.
    @@ -16781,6 +17279,8 @@

    S

    If true, then the content of the file URI is read and transferred.
    +
    setSerializationFormat(RDFFormat) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    setSerializedTreeFile(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.MultiSourceDispatcherIncrementalMerge
    Sets the file where the serialzed merge tree is stored.
    @@ -16909,15 +17409,19 @@

    S

     
    setTrainBatchSize(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersFineTuner
     
    -
    setTrainingArguments(TransformersTrainerArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersFineTuner
    +
    setTrainingArguments(TransformersArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    Do not allow to set training arguments - not used for llms.
    +
    +
    setTrainingArguments(TransformersArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersFineTuner
    This class does not allow setting training argumnets.
    -
    setTrainingArguments(TransformersTrainerArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    +
    setTrainingArguments(TransformersArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
    No training arguments can be used for SentenceTransformersMatcher - do NOT call this method.
    -
    setTrainingArguments(TransformersTrainerArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
    +
    setTrainingArguments(TransformersArguments) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
    Sets the training arguments of the huggingface trainer.
    @@ -16933,6 +17437,8 @@

    S

     
    setUseIngoing(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    +
    setUseLabelInsteadOfResource(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    setUseLiteral(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    setUseOutgoing(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
    @@ -16976,6 +17482,14 @@

    S

    If set to true, then it will samples random elements which can also appear multiple times in different correspondences.
    +
    setWordForcer(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    When setting this option to true, the constrained beam search is activated and the words yes and no will be forced.
    +
    +
    setWordStopper(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    If set to true the text generation will automatically stop if the word yes or no is generated.
    +
    setWorkingDirectory(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process.ExternalProcess
    Sets the working directory of the external process.
    @@ -17276,6 +17790,8 @@

    S

     
    sourceURIs - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.multisource.SourceTargetURIs
     
    +
    sourceURLs - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment
    +
     
    SPANISH - Enum constant in enum de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.Language
     
    sparqlService - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.webIsAlod.classic.WebIsAlodClassicKnowledgeSource
    @@ -17342,6 +17858,14 @@

    S

     
    SSSOMEntityType() - Constructor for enum de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMEntityType
     
    +
    SSSOMFormatException - Exception in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api
    +
    +
    Exception representing a error when data does not fit to SSSOM schema
    +
    +
    SSSOMFormatException(String) - Constructor for exception de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMFormatException
    +
     
    +
    SSSOMFormatException(String, Throwable) - Constructor for exception de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMFormatException
    +
     
    SSSOMMappingCardinality - Enum in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api
     
    SSSOMMappingCardinality(String) - Constructor for enum de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMMappingCardinality
    @@ -17565,6 +18089,8 @@

    S

    StringUtil() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.StringUtil
     
    +
    subClassText - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
     
    SUBJECT_CATEGORY - Enum constant in enum de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.DefaultExtensions.SSSOM
    STRING: The conceptual category to which the subject belongs to.
    @@ -17773,6 +18299,8 @@

    T

     
    targetURIs - Variable in class de.uni_mannheim.informatik.dws.melt.matching_eval.multisource.SourceTargetURIs
     
    +
    targetURLs - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment
    +
     
    tdbDataset - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.babelnet.BabelNetRdfLinker
    The TDB dataset into which the DBpedia data set was loaded.
    @@ -17994,6 +18522,14 @@

    T

     
    TextExtractorForTransformers(int) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorForTransformers
     
    +
    TextExtractorLabelAndDirectSuperclass - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors
    +
    +
    Extracts a label for the given resource and also creates a text for the superclass such that more context is provided.
    +
    +
    TextExtractorLabelAndDirectSuperclass() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
     
    +
    TextExtractorLabelAndDirectSuperclass(String, boolean) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass
    +
     
    TextExtractorMap - Interface in de.uni_mannheim.informatik.dws.melt.matching_jena
    Given a Jena resource, a ValueExtractor can derive zero or more String representations.
    @@ -18014,12 +18550,29 @@

    T

     
    TextExtractorMultipleProperties(Property...) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorMultipleProperties
     
    +
    TextExtractorOnlyLabel - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors
    +
    +
    Extracts only one speaking label (language can be set in constructor) which can be (in decreasing importance): + skos:prefLabel, rdfs:label, fragment (only if more than 50 percent are not numbers), skos:altLabel, skos:hiddenLabel.
    +
    +
    TextExtractorOnlyLabel() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
     
    +
    TextExtractorOnlyLabel(String) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel
    +
     
    TextExtractorProperty - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors
    Extracts all values from a specific property as long as it is a literal.
    TextExtractorProperty(Property) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorProperty
     
    +
    TextExtractorResourceDescriptionInRDF - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors
    +
     
    +
    TextExtractorResourceDescriptionInRDF() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    TextExtractorResourceDescriptionInRDF(boolean) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    +
    TextExtractorResourceDescriptionInRDF(boolean, RDFFormat) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    TextExtractorSet - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors
    A TextExtractor which extracts texts from a resource which can be used by transformer @@ -18055,6 +18608,16 @@

    T

    TextExtractorUseLongestLiteralOrFragment() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorUseLongestLiteralOrFragment
     
    +
    TextExtractorVerbalizedRDF - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors
    +
     
    +
    TextExtractorVerbalizedRDF() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
     
    +
    TextExtractorVerbalizedRDF(boolean, boolean) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF
    +
     
    +
    textGenerationPrediction(LLMBase, File, List<Set<String>>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    +
    +
    Run text generation model (like a large language model llm) given a file with left and right value which are replaced .
    +
    textPosition() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.visualization.LatexPrecisionRecall.PrecRecPoint
     
    textProperties - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.DocumentSimilarityBase
    @@ -18185,9 +18748,9 @@

    T

    Write the counter to a file (content is json).
    -
    toJsonString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
    +
    toJsonString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
     
    -
    toJsonString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    +
    toJsonString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
     
    tokenize(String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.StringUtil
    @@ -18417,8 +18980,12 @@

    T

     
    toString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.ExecutionResult
     
    +
    toString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner
    +
     
    toString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ConfidenceRefiner
     
    +
    toString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner
    +
     
    toString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ResidualRefiner
     
    toString() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.TypeRefiner
    @@ -18522,6 +19089,10 @@

    T

    ToString method which returns return values from functions like Counter.mostCommon(int) well formatted in multiple lines to have a better overview.
    +
    toStringMultiline(Collection<Map.Entry<T, Double>>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.Counter
    +
    +
    ToString method which returns the given entries well formatted in multiple lines.
    +
    toStringMultilineInfo() - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment
    ToString method which returns the alignment in multiple lines (each correspondence in one line) to have a @@ -18888,6 +19459,18 @@

    T

     
    transformer - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.TransformationEdge
     
    +
    TransformersArguments - Class in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    +
    +
    This class represents the arguments for the transformers library.
    +
    +
    TransformersArguments() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
    +
     
    +
    TransformersArguments(TransformersArguments) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
    +
     
    +
    TransformersArguments(Object...) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
    +
     
    +
    TransformersArguments(Map<String, Object>) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
    +
     
    TransformersBase - Class in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    This is a base class for all Transformers.
    @@ -18960,12 +19543,6 @@

    T

    TransformersHpSearchSpace() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
     
    -
    TransformersMatcher - Class in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    -
    -
    This matcher uses the Sentence Transformers library to build an embedding space for each resource given a textual representation of it.
    -
    -
    TransformersMatcher() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersMatcher
    -
     
    transformersMultiClassPrediction(TransformersFilter, File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
    Run a transformers model on a CSV file with two columns (text left and text right) for multi class prediction.
    @@ -18986,18 +19563,6 @@

    T

    Run a transformers model on a CSV file with two columns (text left and text right) to predict if they describe the same concept.
    -
    TransformersTrainerArguments - Class in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
    -
    -
    This class represents the arguments for the huggingface trainer.
    -
    -
    TransformersTrainerArguments() - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    -
     
    -
    TransformersTrainerArguments(TransformersTrainerArguments) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    -
     
    -
    TransformersTrainerArguments(Object...) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    -
     
    -
    TransformersTrainerArguments(Map<String, Object>) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
    -
     
    transformersUpdateBaseRequest(TransformersBase, HttpGet) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.PythonServer
     
    transformInOneStep(Iterable<Class<?>>, Class<T>, Properties, int) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.TypeTransformerRegistry
    @@ -19389,8 +19954,12 @@

    U

     
    useIngoing - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    +
    useLabelInsteadOfResource - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF
    +
     
    useLiteral - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    +
    useNumbers - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
    +
     
    useOutgoing - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
     
    useResource - Variable in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance.SimilarNeighboursFilter
    @@ -20237,6 +20806,10 @@

    W

    Word2VecType() - Constructor for enum de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecType
     
    +
    wordForcer - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    If set to true, the generation will be stopped if yes or no words appear.
    +
    WORDNET - Enum constant in enum de.uni_mannheim.informatik.dws.melt.matching_ml.kgvec2go.KGvec2goDatasets
     
    WordNetEmbeddingLinker - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.wordNet
    @@ -20265,6 +20838,10 @@

    W

    WordNetLinker(WordNetKnowledgeSource) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.wordNet.WordNetLinker
     
    +
    wordStopper - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase
    +
    +
    If set to true, the generation will be stopped if yes or no words appear.
    +
    workingDirectory - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process.ExternalProcess
    The working directory to start the external process.
    @@ -20361,6 +20938,8 @@

    W

     
    writeClassificationFormat(OntModel, OntModel, Alignment, File, boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBaseFineTuner
     
    +
    writeConfusionMatrixMultiClass(ExecutionResult, File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    writeContentToFile(File, String) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.io.IOoperations
    A very simple file writer.
    @@ -20462,6 +21041,8 @@

    W

    Write the overview file, i.e.
    +
    writeOverviewFileMatcherTestCase(List<RelationTypeRefiner>, TestCase, String, CSVPrinter) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    writePrecision(double) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_eval.visualization.LatexPrecisionRecall
     
    writer - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process.ProcessOutputAlignmentCollector
    @@ -20488,6 +21069,8 @@

    W

     
    writeResultsToDirectory(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRankGroup
     
    +
    writeResultsToDirectory(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    +
     
    writeResultsToDirectory(File) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance.EvaluatorMcNemarSignificance
    Two files will be written.
    diff --git a/javadoc_latest/index.html b/javadoc_latest/index.html index c0788b6ede..c00abfcaa3 100644 --- a/javadoc_latest/index.html +++ b/javadoc_latest/index.html @@ -97,183 +97,185 @@

    MELT - Matching EvaLuation Toolkit 3.4-SNAPSHOT API

     
     
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    - -
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    + +
    This package contains classes which support external knowledge sources that can be used for matching.
    - -
     
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    - -
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    + +
    This package contains preconfigured matcher content that can be used in matching pipelines or as an example/reference for a new background-based matcher.
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    This package contains mapping extraction approaches as shown in Analyzing Mapping Extraction Approaches - C.
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    This package contains a client to consume KGvec2go vectors easily in Java.
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rainBatchSize()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"TrainingAlignmentGenerator","l":"getTrainingAlignment(Alignment, 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rainBatchSize()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"TrainingAlignmentGenerator","l":"getTrainingAlignment(Alignment, 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LabelToConceptLinker)","u":"writeLinksToFile(java.lang.String,java.util.List,de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.LabelToConceptLinker)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"WriteNumpy","l":"writeList(List)","u":"writeList(java.util.List)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"WriteNumpy","l":"writeList(List, File)","u":"writeList(java.util.List,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"WriteNumpy","l":"writeList(List, Writer)","u":"writeList(java.util.List,java.io.Writer)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_assembly","c":"WriteMainMatcherClassToFile","l":"WriteMainMatcherClassToFile()","u":"%3Cinit%3E()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization","c":"LatexPrecisionRecall","l":"writeMatcher(String, double, double)","u":"writeMatcher(java.lang.String,double,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"SSSOMSerializer","l":"writeMetadata(SSSOMPrefixMap, Alignment, OutputStreamWriter, boolean)","u":"writeMetadata(de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMPrefixMap,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.OutputStreamWriter,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"FileSaveMatcher","l":"writeModel(OntModel, File)","u":"writeModel(org.apache.jena.ontology.OntModel,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeModelAsTextFile(String, String)","u":"writeModelAsTextFile(java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeModelAsTextFile(String, String, String)","u":"writeModelAsTextFile(java.lang.String,java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeModelToFile(OntModel, File)","u":"writeModelToFile(org.apache.jena.ontology.OntModel,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeModelToFile(URL, File)","u":"writeModelToFile(java.net.URL,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeModelToStdOut(OntModel)","u":"writeModelToStdOut(org.apache.jena.ontology.OntModel)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeModelToStdOut(URL)","u":"writeModelToStdOut(java.net.URL)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"WriteNumpy","l":"WriteNumpy()","u":"%3Cinit%3E()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"SentenceTransformersFineTuner","l":"writeOneTriplet(Resource, Resource, Resource, Map>>, Writer)","u":"writeOneTriplet(org.apache.jena.rdf.model.Resource,org.apache.jena.rdf.model.Resource,org.apache.jena.rdf.model.Resource,java.util.Map,java.io.Writer)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorRelationTypePrediction","l":"writeOverviewFileMatcherTestCase(List, TestCase, String, CSVPrinter)","u":"writeOverviewFileMatcherTestCase(java.util.List,de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.lang.String,org.apache.commons.csv.CSVPrinter)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorCSV","l":"writeOverviewFileMatcherTestCase(TestCase, String, File, boolean)","u":"writeOverviewFileMatcherTestCase(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.lang.String,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization","c":"LatexPrecisionRecall","l":"writePrecision(double)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ProcessOutputAlignmentCollector","l":"writer"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization","c":"LatexPrecisionRecall","l":"writeRecall(double)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction","c":"RelationTypeFineTuner","l":"writeRelationPredictionFormat(Model, Writer)","u":"writeRelationPredictionFormat(org.apache.jena.rdf.model.Model,java.io.Writer)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"DocumentSimilarityBase","l":"writeResourceText(ExtendedIterator, Writer)","u":"writeResourceText(org.apache.jena.util.iterator.ExtendedIterator,java.io.Writer)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"Evaluator","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorAlignmentAnalyzer","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorBasic","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorCopyResults","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorCSV","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorPipeline","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorRank","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorRankGroup","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorRelationTypePrediction","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance","c":"EvaluatorMcNemarSignificance","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage","c":"ResultsPageHTML","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage","c":"ResultsPageLatex","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.multisource","c":"EvaluatorMultiSource","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.multisource","c":"EvaluatorMultiSourceBasic","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance","c":"EvaluatorMcNemarSignificance","l":"writeResultsToDirectory(String)","u":"writeResultsToDirectory(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.stringOperations","c":"StringOperations","l":"writeSetToFile(File, Set)","u":"writeSetToFile(java.io.File,java.util.Set)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeSetToFile(File, Set)","u":"writeSetToFile(java.io.File,java.util.Set)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.io","c":"IOoperations","l":"writeSetToFileInOutputDirectory(Set, String)","u":"writeSetToFileInOutputDirectory(java.util.Set,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance","c":"EvaluatorMcNemarSignificance","l":"writeTestCaseResultFile(Map, File)","u":"writeTestCaseResultFile(java.util.Map,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTestCaseSourceToFile(TestCase, File)","u":"writeTestCaseSourceToFile(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTestCaseTargetToFile(TestCase, File)","u":"writeTestCaseTargetToFile(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTestCaseToFolder(TestCase)","u":"writeTestCaseToFolder(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTestCaseToFolder(TestCase, File)","u":"writeTestCaseToFolder(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers","c":"MultiSourceDispatcherIncrementalMergeByClusterText","l":"writeTextualRepresentationOfModel(Model, File)","u":"writeTextualRepresentationOfModel(org.apache.jena.rdf.model.Model,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.kgvec2go","c":"KGvec2goClient","l":"writeToBuffer(String, KGvec2goDatasets, Double[])","u":"writeToBuffer(java.lang.String,de.uni_mannheim.informatik.dws.melt.matching_ml.kgvec2go.KGvec2goDatasets,java.lang.Double[])"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"writeToCompressedFile(File, File)","u":"writeToCompressedFile(java.io.File,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"Evaluator","l":"writeToDirectory()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.multisource","c":"EvaluatorMultiSource","l":"writeToDirectory()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"Evaluator","l":"writeToDirectory(File)","u":"writeToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.multisource","c":"EvaluatorMultiSource","l":"writeToDirectory(File)","u":"writeToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"Evaluator","l":"writeToDirectory(String)","u":"writeToDirectory(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.multisource","c":"EvaluatorMultiSource","l":"writeToDirectory(String)","u":"writeToDirectory(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"writeToFile(File)","u":"writeToFile(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage","c":"ResultsPageHTML","l":"writeToFile(File)","u":"writeToFile(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage","c":"ResultsPageLatex","l":"writeToFile(File)","u":"writeToFile(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers","c":"MergeOrder","l":"writeToFile(File)","u":"writeToFile(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"writeToFile(File, File)","u":"writeToFile(java.io.File,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"writeToFile(String)","u":"writeToFile(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance","c":"EvaluatorMcNemarSignificance","l":"writeTrackResultFile(Map, File)","u":"writeTrackResultFile(java.util.Map,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTrackToFolder(Track)","u":"writeTrackToFolder(de.uni_mannheim.informatik.dws.melt.matching_data.Track)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTrackToFolder(Track, File)","u":"writeTrackToFolder(de.uni_mannheim.informatik.dws.melt.matching_data.Track,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTrackToStdOut(Track)","u":"writeTrackToStdOut(de.uni_mannheim.informatik.dws.melt.matching_data.Track)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction","c":"RelationTypeFineTuner","l":"writeTrainingFile(OntModel, OntModel, Alignment, File, boolean)","u":"writeTrainingFile(org.apache.jena.ontology.OntModel,org.apache.jena.ontology.OntModel,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"SentenceTransformersFineTuner","l":"writeTrainingFile(OntModel, OntModel, Alignment, File, boolean)","u":"writeTrainingFile(org.apache.jena.ontology.OntModel,org.apache.jena.ontology.OntModel,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"TransformersBaseFineTuner","l":"writeTrainingFile(OntModel, OntModel, Alignment, File, boolean)","u":"writeTrainingFile(org.apache.jena.ontology.OntModel,org.apache.jena.ontology.OntModel,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea","c":"OpenEAMatcher","l":"writeTrainValAlignments(Alignment, File)","u":"writeTrainValAlignments(de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"SentenceTransformersFineTuner","l":"writeTripletFormat(OntModel, OntModel, Alignment, File, boolean)","u":"writeTripletFormat(org.apache.jena.ontology.OntModel,org.apache.jena.ontology.OntModel,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeVocabularyToFile(String, File)","u":"writeVocabularyToFile(java.lang.String,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeVocabularyToFile(String, String)","u":"writeVocabularyToFile(java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization","c":"LatexPrecisionRecall.PrecRecPoint","l":"x"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter","c":"TopXFilter","l":"x"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.webIsAlod","c":"WebIsAlodSPARQLservice","l":"XL_CONFIDENCE"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization","c":"LatexPrecisionRecall.PrecRecPoint","l":"y"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_data","c":"TrackRepository.CommonKG","l":"YAGO_WIKIDATA_V1"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_data","c":"TrackRepository.CommonKG","l":"YAGO_WIKIDATA_V1_SMALL"}];updateSearchResults(); \ No newline at end of file diff --git a/javadoc_latest/overview-tree.html b/javadoc_latest/overview-tree.html index e3fb352693..022e97bd3e 100644 --- a/javadoc_latest/overview-tree.html +++ b/javadoc_latest/overview-tree.html @@ -70,6 +70,7 @@

    Hierarchy For All Packages

  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric,
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.alignmentanalyzer,
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm,
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation,
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking,
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity,
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance,
  • @@ -235,6 +236,8 @@

    Class Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherPipelineYAAA
  • de.uni_mannheim.informatik.dws.melt.matching_jena.MatcherYAAAJena (implements de.uni_mannheim.informatik.dws.melt.matching_base.IMatcher<ModelClass,AlignmentClass,ParameterClass>)
      +
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentExtensions
    • +
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AddAlignmentMatcher
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel.AdditionalConfidenceByFunction
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.AdditionalConfidenceFilter (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives.AddNegativesRandomly (implements de.uni_mannheim.informatik.dws.melt.matching_base.AddNegatives) @@ -308,6 +311,12 @@

      Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.TopXFilter (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
    • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBase
        +
      • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBase (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter) +
          +
        • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMBinaryFilter (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
        • +
        • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
        • +
        +
      • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersMatcher
      • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersBaseFineTuner
          @@ -327,7 +336,6 @@

          Class Hierarchy

      • -
      • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersMatcher
      • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.TypeFilter (implements de.uni_mannheim.informatik.dws.melt.matching_base.Filter)
    • @@ -375,6 +383,7 @@

      Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers.logmap.Alignment2LogmapMapping
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.alignmentanalyzer.AlignmentAnalyzerResult
    • de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.AlignmentAndParameters
    • +
    • de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.AlignmentClosureRefiner (implements de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.Refiner)
    • de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.AlignmentParser
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util.AlignmentsCube
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util.AlignmentsCube.StringString
    • @@ -400,6 +409,7 @@

      Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.clustermerge.ClustererSmile (implements de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.clustermerge.Clusterer)
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.Clustering (implements java.lang.Cloneable, java.io.Serializable)
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.ClusterUtil
    • +
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelation
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.setSimilarityMeasures.CombinedJaccardAndOverlapCoefficient (implements de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.setSimilarityMeasures.SetSimilarityMeasure)
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.ComputeErrDegree<T>
    • com.googlecode.cqengine.ConcurrentIndexedCollection<O> (implements com.googlecode.cqengine.IndexedCollection<O>) @@ -463,6 +473,7 @@

      Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorPipeline
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRank
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRankGroup
    • +
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.EvaluatorRelationTypePrediction
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage.ResultsPageHTML
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage.ResultsPageLatex
    @@ -588,6 +599,7 @@

    Class Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.Metric<MetricResult>
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.alignmentanalyzer.AlignmentAnalyzerMetric
    • +
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation.CMRelationMetric
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm.ConfusionMatrixMetric
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking.RankingMetric
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking.RankingMetricGroup
    • @@ -645,6 +657,7 @@

      Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives.RandomSampleSet<E>
    • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking.RankingResult
    • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction.RelationTypePredictionResult
    • +
    • de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.RelationTypeRefiner (implements de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.Refiner)
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.setSimilarityMeasures.RelativeSubsetSizeCoefficient (implements de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.setSimilarityMeasures.SetSimilarityMeasure)
    • de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.ResidualRefiner (implements de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.Refiner)
    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.resourcesExtractors.ResourcesExtractorClasses (implements de.uni_mannheim.informatik.dws.melt.matching_jena.ResourcesExtractor)
    • @@ -684,6 +697,7 @@

      Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.wordNet.WordNetKnowledgeSource
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicateInputAlignment (implements de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicate)
  • de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance.SignificanceCount
  • de.uni_mannheim.informatik.dws.melt.matching_eval.multisource.SourceTargetURIs
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.sparql.SparqlServices
  • @@ -706,14 +720,18 @@

    Class Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorAllStringLiterals (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorFallback (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorForTransformers (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorLabelAndDirectSuperclass (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractorsMap.TextExtractorMapSet (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractorMap)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorMultipleProperties (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorOnlyLabel (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorProperty (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorResourceDescriptionInRDF (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorSet (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorShortAndLongTexts (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorUrlFragment (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorUrlLocalName (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorUseLongestLiteralOrFragment (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors.TextExtractorVerbalizedRDF (implements de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)
  • java.lang.Thread (implements java.lang.Runnable)
  • +
  • de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMFormatException
  • de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.TypeTransformationException
  • @@ -797,8 +816,8 @@

    Class Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.ObjectTransformationRoute<T>
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersHpSearchSpace
  • -
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersTrainerArguments
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.TransitiveClosure<T>
  • de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.TypeRefiner (implements de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.Refiner)
  • de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.basetransformers.TypeTransformerHelper
  • @@ -870,6 +889,7 @@

    Interface Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_eval.multisource.Partitioner
  • de.uni_mannheim.informatik.dws.melt.matching_eval.refinement.Refiner
  • de.uni_mannheim.informatik.dws.melt.matching_jena.ResourcesExtractor
  • +
  • de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.SentenceTransformersPredicate
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.setSimilarityMeasures.SetSimilarityMeasure
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.labelToConcept.stringCleaners.StringCleaner
  • de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.stringEquality.StringEquality
  • diff --git a/javadoc_latest/package-search-index.js b/javadoc_latest/package-search-index.js index ca60bd0975..00733c964e 100644 --- a/javadoc_latest/package-search-index.js +++ b/javadoc_latest/package-search-index.js @@ -1 +1 @@ -packageSearchIndex = [{"l":"All Packages","u":"allpackages-index.html"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_assembly"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.external.docker"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.external.http"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.external.seals"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.multisource"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.receiver"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.basetransformers"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_data"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval_client"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.explainer"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.alignmentanalyzer"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.hobbit"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.matchers"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.multisource"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.profiling"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.refinement"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.resultswriter.mappingdesc"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.util"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.babelnet"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.combined"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.dbpedia"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.embeddings"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.dataStructures"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.io"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.labelToConcept"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.labelToConcept.nGramTokenizers"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.labelToConcept.stringCleaners"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.labelToConcept.stringModifiers"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.math"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.nlp"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.optimizer"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.persistence"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.setSimilarityMeasures"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.sparql"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.stringEquality"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.stringOperations"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.testTools"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.statistics"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.webIsAlod"},{"l":"de.uni_mannheim.informatik.dws.melt.matching_j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    Class class ExtensionMap extends HashMap<String,Object> implements Serializable +
  • +
    +

    Exception de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMFormatException

    +
    class SSSOMFormatException extends Exception implements Serializable
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    serialVersionUID:
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\ No newline at end of file