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<!doctype html>
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<title>Denis Griffis' cyber-presence - Publications</title>
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<div id="publications">
<h4>Pre-prints</h4>
<ul>
<li>
<div class="title"><a href="https://arxiv.org/pdf/1705.08488.pdf">Second-Order Word Embeddings from Nearest Neighbor Topological Features</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span>, Eric Fosler-Lussier</div>
<div class="where"><span class="venue">arXiv arXiv:1705.08488</span>. 2017.
<div class="resources clearfix">
<a class="arxiv" href="https://arxiv.org/pdf/1705.08488.pdf">arXiv</a>
<a class="bib" href="papers/arXiv-1705-08488.bib">BibTex</a>
</div>
</li>
</ul>
<h4>Peer-Reviewed Publications</h4>
<ul>
<li>
<div class="title">A Quantitative and Qualitative Evaluation of Sentence Boundary Detection for the Clinical Domain</div>
<div class="authors">Denis R Griffis, Chaitanya Shivade, Eric Fosler-Lussier, Albert M Lai</div>
<div class="where">Proceedings of the Clinical Research Informatics Conference of the American Medical Association (AMIA CRI). Pages 88-97. 2016</div>
<div class="resources">
<a href="papers/2016-AMIA-CRI.pdf">PDF</a>
<a class="bib" href="papers/2016-AMIA-CRI.bib">BibTex</a>
<a href="https://github.com/drgriffis/SBD-Evaluation">Source code</a>
<a href="presentations/2016-AMIA-CRI.pdf">Slides</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2017-BioNLP.pdf">Insights into Analogy Completion from the Biomedical Domain</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span>, Albert M. Lai, Eric Fosler-Lussier</div>
<div class="where"><span class="venue">Proceedings of the 16th Workshop on Biomedical Natural Language Processing</span>. 2017</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2017-BioNLP.pdf">PDF</a>
<a class="bib" href="papers/2017-BioNLP.bib">BibTex</a>
<a class="source" href="https://github.com/OSU-slatelab/BMASS">Source code</a>
<a class="data" href="https://slate.cse.ohio-state.edu/BMASS">Data</a>
<a class="slides" href="presentations/2017-BioNLP.pdf">Slides</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2018-BioNLP.pdf">Embedding Transfer for Low-Resource Medical Named Entity Recognition: A Case Study on Patient Mobility.</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span> and Ayah Zirikly</div>
<div class="where"><span class="venue">BioNLP</span>. 2018</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2018-BioNLP.pdf">PDF</a>
<a class="bib" href="papers/2018-BioNLP.bib">BibTex</a>
<a class="source" href="https://github.com/drgriffis/NeuralVecmap">Source code</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2018-Repl4NLP.pdf">Jointly Embedding Entities and Text with Distant Supervision</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span>, Albert M. Lai, Eric Fosler-Lussier</div>
<div class="where"><span class="venue">3rd Workshop on Representation Learning for NLP (Repl4NLP)</span>. 2018</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2018-Repl4NLP.pdf">PDF</a>
<a class="bib" href="papers/2018-Repl4NLP.bib">BibTex</a>
<a class="source" href="https://github.com/OSU-slatelab/JET">Source code</a>
<a class="data" href="https://slate.cse.ohio-state.edu/JET">Data</a>
<a class="data-wide" href="https://slate.cse.ohio-state.edu/WikiSRS">WikiSRS dataset</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2017-BIBM.pdf">Inductive identification of functional status information and establishing a gold standard corpus: A case study on the Mobility domain.</a></div>
<div class="authors">Thanh Thieu, Jonathan Camacho, Pei-Shu Ho, Julia Porcino, Min Ding, Lisa Nelson, Elizabeth Rasch, Chunxiao Zhou, Leighton Chan, Diane Brandt, <span class="me">Denis Newman-Griffis</span>, Ao Yuan, Albert M. Lai</div>
<div class="where"><span class="venue">2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)</span>. Pages 2,319-2,321. 2017</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2017-BIBM.pdf">PDF</a>
<a class="bib" href="papers/2017-BIBM.bib">BibTex</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2019-RepEval.pdf">Characterizing the impact of geometric properties of word embeddings on task performance.</a></div>
<div class="authors">Brendan Whitaker*, <span class="me">Denis Newman-Griffis*,</span> Aparajita Haldar*, Hakan Ferhatosmanoglu, and Eric Fosler-Lussier</div>
<div class="where"><span class="venue">Third Workshop on Evaluating Vector Space Representations for NLP (RepEval)</span>. 2019</div>
<div class="pub-notes">(*=equal contributor)</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2019-RepEval.pdf">PDF</a>
<a class="bib" href="papers/2019-RepEval.bib">BibTex</a>
<a class="source" href="https://github.com/OSU-slatelab/geometric-embedding-properties">Source code</a>
<a class="slides" href="presentations/2019-RepEval.pdf">Slides</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2019-BioNLP.pdf">Classifying the reported ability in clinical mobility descriptions.</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis*,</span> Ayah Zirikly*, Guy Divita*, and Bart Desmet</div>
<div class="where"><span class="venue">BioNLP</span>. 2019</div>
<div class="pub-notes">(*=equal contributor)</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2019-BioNLP.pdf">PDF</a>
<a class="bib" href="papers/2019-BioNLP.bib">BibTex</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2019-LOUHI.pdf">Writing habits and telltale neighbors: analyzing clinical concept usage patterns with sublanguage embeddings.</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span> and Eric Fosler-Lussier</div>
<div class="where"><span class="venue">Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis (LOUHI 2019)</span>. 2019</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2019-LOUHI.pdf">PDF</a>
<a class="bib" href="papers/2019-LOUHI.bib">BibTex</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2019-EMNLP-SD.pdf">HARE: a Flexible Highlighting Annotator for Ranking and Exploration.</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span> and Eric Fosler-Lussier</div>
<div class="where"><span class="venue">Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing: Systems Demonstrations</span>. 2019</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2019-EMNLP-SD.pdf">PDF</a>
<a class="bib" href="papers/2019-EMNLP-SD.bib">BibTex</a>
<a class="source" href="https://github.com/OSU-slatelab/HARE">Source code</a>
</div>
</li>
<li>
<div class="title"><a href="papers/2019-MLHPC.pdf">Parallel Data-Local Training for Optimizing Word2Vec Embeddings for Word and Graph Embeddings.</a></div>
<div class="authors">Gordon E. Moon, <span class="me">Denis Newman-Griffis</span>, Jinsung Kim, Aravind Sukumaran-Rajam, Eric Fosler-Lussier, and P. Sadayappan</div>
<div class="where"><span class="venue">Proceedings of the 2019 Workshop on Machine Learning in HPC Environments</span>, 2019.</div>
<div class="resources clearfix">
<a class="pdf" href="papers/2019-MLHPC.pdf">PDF</a>
<a class="bib" href="papers/2019-MLHPC.bib">BibTex</a>
</div>
</li>
<li>
<div class="title"><a href="https://doi.org/10.1186/s12889-019-7630-3">Broadening horizons: the case for capturing function and the role of health informatics in its use.</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span>, Julia Porcino, Ayah Zirikly, Thanh Thieu, Jonathan Camacho Maldonado, Pei-Shu Ho, Min Ding, Leighton Chan, and Elizabeth Rasch</div>
<div class="where"><span class="venue">BMC Public Health</span>, (2019) 19:1288. DOI: <a href="https://doi.org/10.1186/s12889-019-7630-3">10.1186/s12889-019-7630-3</a></div>
<div class="resources clearfix">
<a class="pdf" href="https://bmcpublichealth.biomedcentral.com/track/pdf/10.1186/s12889-019-7630-3">PDF</a>
</div>
</li>
<li>
<div class="title"><a href="https://www.aclweb.org/anthology/2020.lt4gov-1.1/">Development of Natural Language Processing Tools to Support Determination of Federal Disability Benefits in the U.S.</a></div>
<div class="authors">Bart Desmet, Julia Porcino, Ayah Zirikly, <span class="me">Denis Newman-Griffis</span>, Guy Divita, and Elizabeth Rasch</div>
<div class="where"><span class="venue">Proceedings of the 1st Workshop on Language Technologies for Government and Public Administration (LT4Gov)</span>, (2020) 1-6. URL: <a href="https://www.aclweb.org/anthology/2020.lt4gov-1.1/">https://www.aclweb.org/anthology/2020.lt4gov-1.1/</a></div>
<div class="resources clearfix">
<a class="pdf" href="https://www.aclweb.org/anthology/2020.lt4gov-1.1.pdf">PDF</a>
</div>
</li>
<li>
<div class="title"><a href="papers/DNG-Thesis.pdf">Capturing Domain Semantics with Representation Learning: Applications to Health and Function</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span></div>
<div class="where"><span class="venue">PhD Dissertation</span>, The Ohio State University (2020).</div>
<div class="resources clearfix">
<a class="pdf" href="papers/DNG-Thesis.pdf">PDF</a>
</div>
</li>
<li>
<div class="title"><a href="https://doi.org/10.1016/j.ijmedinf.2020.104351">A comprehensive study of mobility functioning information in clinical notes: Entity hierarchy, corpus annotation, and sequence labeling</a></div>
<div class="authors">Thanh Thieu, Jonathan Camacho Maldonado, Pei-Shu Ho, Min Ding, Alex Marr, Diane Brandt, <span class="me">Denis Newman-Griffis</span>, Ayah Zirikly, Leighton Chan, and Elizabeth Rasch</div>
<div class="where"><span class="venue">International Journal of Medical Informatics</span>, (2021) 147:104351. DOI: <a href="https://doi.org/10.1016/j.ijmedinf.2020.104351">10.1016/j.ijmedinf.2020.104351</a></div>
<div class="resources clearfix">
<a class="pdf" href="https://doi.org/10.1016/j.ijmedinf.2020.104351">Article</a>
</div>
</li>
<li>
<div class="title"><a href="https://doi.org/10.1093/jamia/ocaa269">Ambiguity in medical concept normalization: An analysis of types and coverage in electronic health record datasets</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span>, Guy Divita, Bart Desmet, Ayah Zirikly, Carolyn P Rosé, and Eric Fosler-Lussier</div>
<div class="where"><span class="venue">Journal of the American Medical Informatics Association</span>, (2020) ocaa269. DOI: <a href="https://doi.org/10.1093/jamia/ocaa269">10.1093/jamia/ocaa269</a></div>
<div class="resources clearfix">
<a class="pdf" href="https://doi.org/10.1093/jamia/ocaa269">Article</a>
</div>
</li>
<li>
<div class="title"><a href="https://doi.org/10.3389/fdgth.2021.620828">Automated Coding of Under-Studied Medical Concept Domains: Linking Physical Activity Reports to the International Classification of Functioning, Disability, and Health</a></div>
<div class="authors"><span class="me">Denis Newman-Griffis</span> and Eric Fosler-Lussier</div>
<div class="where"><span class="venue">Frontiers in Digital Health</span>, (2021) 3:620828. DOI: <a href="https://doi.org/10.3389/fdgth.2021.620828">10.3389/fdgth.2021.620828</a></div>
<div class="resources clearfix">
<a class="pdf" href="https://doi.org/10.3389/fdgth.2021.620828">Article</a>
</div>
</li>
</ul>
</div>
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