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expression_with_negation.owl
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expression_with_negation.owl
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<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
]>
<rdf:RDF xmlns="http://www.semanticweb.org/ontologies/2012/10/Ontology1353576600965/expression_with_negation.owl#"
xml:base="http://www.semanticweb.org/ontologies/2012/10/Ontology1353576600965/expression_with_negation.owl"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<owl:Ontology rdf:about="http://www.semanticweb.org/ontologies/2012/10/Ontology1353576600965/expression_with_negation.owl"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0">
<rdfs:label xml:lang="en">part_of</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/scratch_82ca5acf_b4c4_41e6_b19e_248a2c784499"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/scratch_263e54c9_958c_4456_b6ff_b7434b4690eb -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/scratch_263e54c9_958c_4456_b6ff_b7434b4690eb">
<rdfs:label xml:lang="en">expressed_throughout</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/scratch_4069cc78_2f66_42ed_b12d_4610f6826dda"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/scratch_4069cc78_2f66_42ed_b12d_4610f6826dda -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/scratch_4069cc78_2f66_42ed_b12d_4610f6826dda">
<rdfs:label xml:lang="en">expressed_in</rdfs:label>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/scratch_263e54c9_958c_4456_b6ff_b7434b4690eb"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/scratch_82ca5acf_b4c4_41e6_b19e_248a2c784499"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/scratch_4069cc78_2f66_42ed_b12d_4610f6826dda"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/scratch_82ca5acf_b4c4_41e6_b19e_248a2c784499 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/scratch_82ca5acf_b4c4_41e6_b19e_248a2c784499">
<rdfs:label xml:lang="en">overlaps</rdfs:label>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/scratch_82ca5acf_b4c4_41e6_b19e_248a2c784499"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/scratch_0c5835d3_f792_44f3_9d14_fc47a60081e8 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_0c5835d3_f792_44f3_9d14_fc47a60081e8">
<rdfs:label xml:lang="en">antennal lobe</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_ef5423fd_9a7b_409e_bc63_2296188cda6e"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_160ad621_b27c_49b6_9e9a_86dde9bcd9e6 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_160ad621_b27c_49b6_9e9a_86dde9bcd9e6">
<rdfs:label xml:lang="en">central complex</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_ef5423fd_9a7b_409e_bc63_2296188cda6e"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_20972b28_e4a4_4e1f_90e9_18993fa21a89 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_20972b28_e4a4_4e1f_90e9_18993fa21a89">
<rdfs:label xml:lang="en">calyx</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_c1e8698d_9e04_437f_a661_0b3ac7f8a7c3"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_f5d04207_f37f_42cb_b036_cede2a01e72d"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_278a57e9_dc61_4364_9b3f_ea5e572b247e -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_278a57e9_dc61_4364_9b3f_ea5e572b247e">
<rdfs:label xml:lang="en">pedunculus</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_c1e8698d_9e04_437f_a661_0b3ac7f8a7c3"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_f5d04207_f37f_42cb_b036_cede2a01e72d"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_523e2bc8_4f47_43b2_800c_2a5005cf522a -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_523e2bc8_4f47_43b2_800c_2a5005cf522a">
<rdfs:label xml:lang="en">neuron</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_5926332d_538c_4b19_84b8_59d183b359f0 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_5926332d_538c_4b19_84b8_59d183b359f0">
<rdfs:label xml:lang="en">transgene</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_793fe391_903d_4bb3_88e4_89ba5ca78966 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_793fe391_903d_4bb3_88e4_89ba5ca78966">
<rdfs:label xml:lang="en">DL1 adPN</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_523e2bc8_4f47_43b2_800c_2a5005cf522a"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_82ca5acf_b4c4_41e6_b19e_248a2c784499"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_20972b28_e4a4_4e1f_90e9_18993fa21a89"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_82ca5acf_b4c4_41e6_b19e_248a2c784499"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_ed2eb0d9_20ae_462a_85a8_5d1531301768"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:comment>Adding Probe axiom:
DL1 adPN SubClassOf: overlaps some 'fan-shaped body'
=> inconsistency due to:
'fan-shaped body' SubClassOf part_of some 'central complex'
expressed_in o part_of SubPropertyOf expressed_in
GH146 Type: expressed_throughout some 'DL1 adPN'
expressed_throughout o overlaps SubPropertyOf expressed_in
DL1 adPN SubClassOf: overlaps some 'fan-shaped body'
'fan-shaped body' SubClassOf part_of some 'central complex'
expressed_in o part_of SubPropertyOf expressed_in
GH146 Type: not (expressed_in some 'central complex')</rdfs:comment>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_98c0ae14_91ab_405e_b038_48b1c04b9428 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_98c0ae14_91ab_405e_b038_48b1c04b9428">
<rdfs:label xml:lang="en">DL2 adPN</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_523e2bc8_4f47_43b2_800c_2a5005cf522a"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_af3a4331_5728_409a_a3c6_f07697c4a8c5 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_af3a4331_5728_409a_a3c6_f07697c4a8c5">
<rdfs:label xml:lang="en">brain</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_f39c1d02_9047_4154_aa64_82c6c968524b"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_c1e8698d_9e04_437f_a661_0b3ac7f8a7c3 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_c1e8698d_9e04_437f_a661_0b3ac7f8a7c3">
<rdfs:label xml:lang="en">synaptic neuropil subdomain</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_de7cf734_31a8_4577_8fc5_3bb7ca6d18c9 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_de7cf734_31a8_4577_8fc5_3bb7ca6d18c9">
<rdfs:label xml:lang="en">fan-shaped body</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_c1e8698d_9e04_437f_a661_0b3ac7f8a7c3"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_160ad621_b27c_49b6_9e9a_86dde9bcd9e6"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_ed2eb0d9_20ae_462a_85a8_5d1531301768 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_ed2eb0d9_20ae_462a_85a8_5d1531301768">
<rdfs:label xml:lang="en">AL glomerulus DL1</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_c1e8698d_9e04_437f_a661_0b3ac7f8a7c3"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_0c5835d3_f792_44f3_9d14_fc47a60081e8"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_ef5423fd_9a7b_409e_bc63_2296188cda6e -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_ef5423fd_9a7b_409e_bc63_2296188cda6e">
<rdfs:label xml:lang="en">synaptic neuropil domain</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_f39c1d02_9047_4154_aa64_82c6c968524b -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_f39c1d02_9047_4154_aa64_82c6c968524b">
<rdfs:label xml:lang="en">ganglion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/scratch_f5d04207_f37f_42cb_b036_cede2a01e72d -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/scratch_f5d04207_f37f_42cb_b036_cede2a01e72d">
<rdfs:label xml:lang="en">mushroom body</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/scratch_ef5423fd_9a7b_409e_bc63_2296188cda6e"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_af3a4331_5728_409a_a3c6_f07697c4a8c5"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/scratch_ea1d2db7_86ac_46d9_85bb_4e991fd090c2 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/scratch_ea1d2db7_86ac_46d9_85bb_4e991fd090c2">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/scratch_5926332d_538c_4b19_84b8_59d183b359f0"/>
<rdf:type>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_263e54c9_958c_4456_b6ff_b7434b4690eb"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_793fe391_903d_4bb3_88e4_89ba5ca78966"/>
</owl:Restriction>
</rdf:type>
<rdf:type>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_4069cc78_2f66_42ed_b12d_4610f6826dda"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_f5d04207_f37f_42cb_b036_cede2a01e72d"/>
</owl:Restriction>
</rdf:type>
<rdf:type>
<owl:Class>
<owl:complementOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_4069cc78_2f66_42ed_b12d_4610f6826dda"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_160ad621_b27c_49b6_9e9a_86dde9bcd9e6"/>
</owl:Restriction>
</owl:complementOf>
</owl:Class>
</rdf:type>
<rdfs:label xml:lang="en">GH146</rdfs:label>
</owl:NamedIndividual>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// General axioms
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<owl:Axiom>
<rdfs:comment>Obviously tedious to add all, but could easily be done programatically for major neuropils. To be complete - would have to be done between all subdomains of each domain too.
Program:
query for all synaptic neuropil domains that are part_of the adult brain. Make spatial disjoints between all.
repeat for all subdomains part of each neuropil.
</rdfs:comment>
<owl:annotatedProperty rdf:resource="&owl;disjointWith"/>
<owl:annotatedTarget>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_f5d04207_f37f_42cb_b036_cede2a01e72d"/>
</owl:Restriction>
</owl:annotatedTarget>
<owl:annotatedSource>
<owl:Restriction>
<owl:disjointWith>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_f5d04207_f37f_42cb_b036_cede2a01e72d"/>
</owl:Restriction>
</owl:disjointWith>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_0c5835d3_f792_44f3_9d14_fc47a60081e8"/>
</owl:Restriction>
</owl:annotatedSource>
</owl:Axiom>
<owl:Restriction>
<owl:disjointWith>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_160ad621_b27c_49b6_9e9a_86dde9bcd9e6"/>
</owl:Restriction>
</owl:disjointWith>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/scratch_0d08b2b1_80a8_435c_a61e_97aa164c26c0"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/scratch_0c5835d3_f792_44f3_9d14_fc47a60081e8"/>
</owl:Restriction>
</rdf:RDF>
<!-- Generated by the OWL API (version 3.2.5.1912) http://owlapi.sourceforge.net -->