From b62e34e7bde95db002324d2b52cdbbd99bfcaf66 Mon Sep 17 00:00:00 2001 From: Dillon Barker Date: Mon, 25 May 2020 12:03:38 -0500 Subject: [PATCH] search only ungapped --- fsac/__init__.py | 2 +- fsac/allele_call.py | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/fsac/__init__.py b/fsac/__init__.py index 81180e1..3a1909a 100644 --- a/fsac/__init__.py +++ b/fsac/__init__.py @@ -1,3 +1,3 @@ -__version__ = '1.1.0' +__version__ = '1.2.0' __author__ = 'Dillon Barker' __email__ = 'dillon.barker@canada.ca' diff --git a/fsac/allele_call.py b/fsac/allele_call.py index 278ac0a..4158215 100644 --- a/fsac/allele_call.py +++ b/fsac/allele_call.py @@ -23,6 +23,7 @@ def blast(query_path: Path, genome_path: Path) -> pd.DataFrame: slen bitscore gaps sseq qseq mismatch' blast_cmd = ['blastn', + '-ungapped', '-query', str(query_path), '-subject', str(genome_path), '-outfmt', out_format]