diff --git a/docs/_attic/glossary_entries_list_dynamic.txt b/docs/_attic/glossary_entries_list_dynamic.txt index 163859b2..6bd154fa 100644 --- a/docs/_attic/glossary_entries_list_dynamic.txt +++ b/docs/_attic/glossary_entries_list_dynamic.txt @@ -1,4 +1,4 @@ -DO NOT EDIT THIS FILE. This file is autogenerated from _attic/glossary_generator.py, update that instead. +DO NOT EDIT THIS FILE. This file is autogenerated from glossary_generator.py, update that instead. .dockstore.yml AGC Amazon Genomics CLI diff --git a/docs/_attic/glossary_generator.py b/docs/_attic/glossary_generator.py index cca19dfc..75ddc319 100644 --- a/docs/_attic/glossary_generator.py +++ b/docs/_attic/glossary_generator.py @@ -22,5 +22,5 @@ if isinstance(glossary_object, GlossEntry): dockstore_dictionary.add_entry(glossary_object) dockstore_dictionary.sort_entries() -dockstore_dictionary.write_toc(contents_outfile, format="txt", skipSource=False, sourcefile=__file__) -dockstore_dictionary.write_glossary(glossary_outfile, sourcefile=__file__) +dockstore_dictionary.write_toc(contents_outfile, format="txt", skipSource=False, sourcefile=os.path.basename(__file__)) +dockstore_dictionary.write_glossary(glossary_outfile, sourcefile=os.path.basename(__file__)) diff --git a/docs/_static/checksum-support.html b/docs/_static/checksum-support.html index 2e686a4b..8bff37e9 100644 --- a/docs/_static/checksum-support.html +++ b/docs/_static/checksum-support.html @@ -27,20 +27,20 @@ Tool (non-hosted) CWL, WDL - Quay.io, Docker Hub, Amazon ECR, GitLab + Quay.io, Docker Hub, Amazon ECR, GitLab, GitHub Container Registry Refresh Workflow CWL, WDL, Nextflow - Quay.io, Docker Hub, Amazon ECR + Quay.io, Docker Hub, Amazon ECR, GitHub Container Registry Snapshot GitHub App Tool CWL - Quay.io, Docker Hub, Amazon ECR + Quay.io, Docker Hub, Amazon ECR, GitHub Container Registry Snapshot - \ No newline at end of file + diff --git a/docs/dictionary.rst b/docs/dictionary.rst index a7571a58..defddc7f 100644 --- a/docs/dictionary.rst +++ b/docs/dictionary.rst @@ -1,4 +1,4 @@ -.. DO NOT EDIT THIS FILE. This file is autogenerated from _attic/glossary_generator.py, update that instead. +.. DO NOT EDIT THIS FILE. This file is autogenerated from glossary_generator.py, update that instead. Dockstore Dictionary ==================== diff --git a/docs/index.rst b/docs/index.rst index 3ec6ac5a..29247cc4 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -24,6 +24,7 @@ If this is your first time learning about Dockstore, we recommend starting with news roadmap dictionary + /assets/templates/template.rst Getting Started --------------- @@ -231,7 +232,6 @@ Advanced developer topics BCC 2020 Docker Training BCC 2020 WDL Training posters-and-talks - /assets/templates/template.rst user-created .. centered:: In Affiliation with