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whenever I try to use clinvar using the -l option, I encounter this error:
charger::getClinVar
warning: ClinVar ReST search batch size given is greater than max allowed (50). Overriding to max search batch size.
Traceback (most recent call last):
File "/home/minku/anaconda3/envs/charger/bin/charger", line 744, in <module>
main( sys.argv[1:] )
File "/home/minku/anaconda3/envs/charger/bin/charger", line 663, in main
mutationTypes = mutationTypes , \
File "/home/minku/anaconda3/envs/charger/lib/python2.7/site-packages/charger/charger.py", line 879, in getExternalData
self.getClinVar( **kwargs )
File "/home/minku/anaconda3/envs/charger/lib/python2.7/site-packages/charger/charger.py", line 905, in getClinVar
self.getClinVarviaREST( **kwargs )
File "/home/minku/anaconda3/envs/charger/lib/python2.7/site-packages/charger/charger.py", line 918, in getClinVarviaREST
ent = entrezapi()
File "/home/minku/anaconda3/envs/charger/lib/python2.7/site-packages/biomine/webapi/entrez/entrezapi.py", line 74, in __init__
self.setRequestLimits()
File "/home/minku/anaconda3/envs/charger/lib/python2.7/site-packages/biomine/webapi/entrez/entrezapi.py", line 332, in setRequestLimits
self.setSummaryBatchSize( entrezaip.summaryBatchSize )
NameError: global name 'entrezaip' is not defined
Is entrezaip supposed to be entrezapi on line 332 and 333?
Thank you! :)
The text was updated successfully, but these errors were encountered:
Hi CharGer Team!
whenever I try to use clinvar using the
-l
option, I encounter this error:Is entrezaip supposed to be entrezapi on line 332 and 333?
Thank you! :)
The text was updated successfully, but these errors were encountered: