From f3af7ffcec9b1278122c31950545ece82ecdd08a Mon Sep 17 00:00:00 2001 From: Nicolas Date: Wed, 15 Jul 2020 12:08:31 +0200 Subject: [PATCH] Update README.md --- README.md | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 3e57c0f..d164347 100755 --- a/README.md +++ b/README.md @@ -48,13 +48,12 @@ Flags are special parameters without value. ------------- | ------------- --help | Display help -## Download test data set ## - -`git clone https://github.com/iarcbioinfo/data_test` ## Usage ## -`nextflow run FastQC.nf --input_folder path/to/fasta/ --output_folder /path/to/output` +`nextflow run IARCbioinfo/fastqc-nf -r v1.1 -profile singularity --input_folder input --output_folder results` + +To run the pipeline without singularity just remove "-profile singularity" ## Output ##