diff --git a/README.md b/README.md index 1c4c332..deab640 100755 --- a/README.md +++ b/README.md @@ -53,7 +53,7 @@ Flags are special parameters without value. `nextflow run IARCbioinfo/fastqc-nf -r v1.1 -profile singularity --input_folder input --output_folder results` -To run the pipeline without singularity just remove "-profile singularity" +To run the pipeline with docker or conda instead of singularity, just replace "-profile singularity" with "-profile docker" or "-profile conda", respectively. To run with your own local installation of softwares, just remove "-profile singularity" ## Output ##