simpleExploration.oms

/*
Replications of temporal dynamics of the social-ecological system
*/

// Import the model plugin
import _file_.modelDeclaration._

// File to store the outputs from all the different replications
val f = Val[File]

// Definition of the environments
val myPCEnvironment = LocalEnvironment(4)
val eukaryoteEnvironment = LocalEnvironment(5)

// Definition of hooks to name the data file and fill it with data from several replications
val copyHook = CopyFileHook(f,workDirectory/"explo_T_${T}_n_${L}_a0_${a0}_d0_${d0}_nF_${nF}_a_${a}_mS_${mS}_wS_${wS}_z_${z}_dES_${dES}_y0_${y0}_y1_${y1}_sFL_${sFL}_sR_${sR}_sD_${sD}_dtSave_${dtSave}.csv" )
val hookAppend = AppendToFileHook(workDirectory/"explo_T_${T}_n_${L}_a0_${a0}_d0_${d0}_nF_${nF}_a_${a}_mS_${mS}_wS_${wS}_z_${z}_dES_${dES}_y0_${y0}_y1_${y1}_sFL_${sFL}_sR_${sR}_sD_${sD}_dtSave_${dtSave}.csv", "${output.content}")

// Creation of a file to store the data from the replications
val createFile = ScalaTask("""
  val f = newFile()
  f.content = "t P N D A0 A1 Y nFrag maxSize e2a corrLen meanES giniES\n"
""") set(
    (inputs,outputs)+=(T,L,a0,d0,nF,a,mS,wS,z,dES,y0,y1,sFL,sR,sD,dtSave),
    outputs+=f
)

// Definition of parameter values for the replication experiment
val setParameters = ScalaTask("""
  val T = 1500.0
  val L = 40.0
  val a0 = 0.15
  val d0 = 0.15
  // val nF = 200.0
  val a = 1.0
  val mS = 0.6
  val wS = 0.0
  val z = 0.25
  val dES = 1.1
  val y0 = 0.2
  val y1 = 1.2
  val sFL = 0.02
  val sR = 0.2
  val sD = 0.02
  val dtSave = 1.0
""") set(
    inputs += nF,
    outputs += (T,L,a0,d0,nF,a,mS,wS,z,dES,y0,y1,sFL,sR,sD,dtSave)
)

// Definition of the replication experiment with number 1 sample
val replicationDynamics = Replication(
  evaluation = modelPluginEuka hook hookAppend on eukaryoteEnvironment,
  seed = mySeed,
  sample = 1
)

// Definition of the values for the exploration
val explorationNF = ExplorationTask(
  nF in Seq(1.0,10.0,100.0,250.0,1000.0)
)

// Workflow
explorationNF -< setParameters -- (createFile hook copyHook) -- replicationDynamics