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Hi Solshi! #1896

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solshiferaw opened this issue Sep 27, 2019 · 1 comment
Closed

Hi Solshi! #1896

solshiferaw opened this issue Sep 27, 2019 · 1 comment

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@solshiferaw
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Hi Solshi!

Could you please describe with a bit more detail what the contents of the NSV will be and what sequence characteristics they will summarize? An example of what you expect this vector to look like would help as well.

Originally posted by @standage in #1895 (comment)
@solshiferaw
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Dear!
My NSV file containing frequency of nuclietied, kmers
Suppose ...
Fasta file contain

RF00050|AECL01000049.1/43972-43822
GGUUGUUCUCAGGGCGGGGUGCAAUUCCCCACCGG
RF00050|CP000628.1/2430019-2430165
GACCGUUCUCAGGGCGGGGUGAGAUUCCCCAC
conver to kmer frequency count(a, aa, aaa,aaaaa, aaaaaa....) aa, au, cua, cug, ggg, aaac........
and convert those kmer frequency into vector to analyse in Weka.
Thank you!

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@solshiferaw