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order features in dammit output gff3 is not right #102

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arsilan324 opened this issue Feb 8, 2018 · 0 comments
Open

order features in dammit output gff3 is not right #102

arsilan324 opened this issue Feb 8, 2018 · 0 comments

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@arsilan324
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Hi,

We are trying to produce feature table format for NCBI submission but unable to do so. We are trying to use convert_gff3_to_ncbi_tbl.py by bicode but it ends up with this issue "Exception: Error in GFF3: Parent Transcript_100002|m.119955 referenced by a child feature before it was defined". Also the locus tags are missing in gff3 file. We also tried to use "correct_gff_feature_order.py" but its also not helping.
Could you please comment on it that how can we fix the order? Or else, if you can guide how to generate .tbl for NCBI submission.

Thanks

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