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python-package.yml
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# Workflow is based on the Astropy GitHub actions workflow, ci_workflows.yml
name: CI
on:
push:
branches:
- '*'
tags:
- '*'
pull_request:
jobs:
tests:
name: Unit tests
runs-on: ${{ matrix.os }}
strategy:
fail-fast: true
matrix:
os: [ubuntu-latest]
# DESI 24.4 release
python-version: ['3.10']
astropy-version: ['==6.0.1']
fitsio-version: ['==1.2.1']
numpy-version: ['==1.22.4']
scipy-version: ['==1.8.1']
matplotlib-version: ['==3.8.4']
env:
DESIUTIL_VERSION: 3.2.5
DESIMODEL_DATA: branches/test-0.19
steps:
- name: Checkout code
uses: actions/checkout@v2
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install pytest
python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil
echo "Step 2" # -> no numpy
python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
python -m pip install -U 'numpy${{ matrix.numpy-version }}'
echo "Step 3" # -> 1.22.4
python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
python -m pip install -U 'astropy${{ matrix.astropy-version }}'
echo "Step 4" # -> 1.22.4
python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
python -m pip cache remove fitsio
echo "Step 5" # -> 1.22.4
python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
python -m pip install --no-deps --force-reinstall --ignore-installed 'fitsio${{ matrix.fitsio-version }}'
echo "Step 6" # -> 1.22.4
python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
#
#python -m pip install pyyaml requests scipy healpy matplotlib
#echo "Step 7" # -> 2.0.1
#python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
#
python -m pip install pyyaml requests
echo "Step 7a" && python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
python -m pip install -U 'scipy${{ matrix.scipy-version }}'
echo "Step 7b" && python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
python -m pip install -U 'matplotlib${{ matrix.matplotlib-version }}'
echo "Step 7c" && python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
python -m pip install healpy
echo "Step 7d" && python -c "import numpy as x; print(x.__version__)" || echo "no numpy yet"
#
svn export https://desi.lbl.gov/svn/code/desimodel/${DESIMODEL_DATA}/data
# ADM grab the surveyops directory.
wget -e robots=off -r -np -nH --cut-dirs 7 https://data.desi.lbl.gov/public/edr/survey/ops/surveyops/tags/0.1/ops/
- name: Run the test
run: DESIMODEL=$(pwd) DESI_SURVEYOPS=$(pwd) pytest
coverage:
name: Test coverage
runs-on: ${{ matrix.os }}
strategy:
fail-fast: true
matrix:
os: [ubuntu-latest]
python-version: ['3.9'] # fuji+guadalupe version
astropy-version: ['==5.0'] # fuji+guadalupe version
fitsio-version: ['==1.1.6'] # fuji+guadalupe version
numpy-version: ['<1.23'] # to keep asscalar, used by astropy
env:
DESIUTIL_VERSION: 3.2.5
DESIMODEL_DATA: branches/test-0.17
steps:
- name: Checkout code
uses: actions/checkout@v2
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install pytest pytest-cov coveralls
python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil
python -m pip install -U 'numpy${{ matrix.numpy-version }}'
python -m pip install -U 'astropy${{ matrix.astropy-version }}'
python -m pip cache remove fitsio
python -m pip install --no-deps --force-reinstall --ignore-installed 'fitsio${{ matrix.fitsio-version }}'
python -m pip install pyyaml requests scipy healpy matplotlib
svn export https://desi.lbl.gov/svn/code/desimodel/${DESIMODEL_DATA}/data
# ADM grab the surveyops directory.
wget -e robots=off -r -np -nH --cut-dirs 7 https://data.desi.lbl.gov/public/edr/survey/ops/surveyops/tags/0.1/ops/
- name: Run the test with coverage
run: DESIMODEL=$(pwd) DESI_SURVEYOPS=$(pwd) pytest --cov
- name: Coveralls
env:
COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: coveralls
docs:
name: Doc test
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.9']
steps:
- name: Checkout code
uses: actions/checkout@v2
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: python -m pip install --upgrade pip setuptools wheel Sphinx
# run: python -m pip install --upgrade pip setuptools wheel docutils\<0.18 Sphinx==3.1.2
- name: Test the documentation
run: sphinx-build -W --keep-going -b html doc doc/_build/html
style:
name: Style check
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.9']
steps:
- name: Checkout code
uses: actions/checkout@v2
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: python -m pip install --upgrade pip wheel pycodestyle
- name: Test the style; failures are allowed
# This is equivalent to an allowed falure.
continue-on-error: true
run: pycodestyle --count py/desimodel