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The names of the files in the archs4 datadir are hard coded in the archs4.files function.
As these files are updated from the ARCHS4 resource, their names will change. ie. the first mouse transcript-level hdf5 file was called "mouse_hiseq_eid_1.0.h5", but the second version is "mouse_hiseq_transcript_v2.h5".
In order to accommodate these changes, the datadir can have a meta.yaml file with a files section, which can look something like this:
I just discovered Rstudio's config package. Might be useful for this, also allowing users to switch between different configuration profiles (defaults, dev, test, etc).
The names of the files in the archs4
datadir
are hard coded in thearchs4.files
function.As these files are updated from the ARCHS4 resource, their names will change. ie. the first mouse transcript-level hdf5 file was called
"mouse_hiseq_eid_1.0.h5"
, but the second version is"mouse_hiseq_transcript_v2.h5"
.In order to accommodate these changes, the
datadir
can have ameta.yaml
file with afiles
section, which can look something like this:The text was updated successfully, but these errors were encountered: