diff --git a/README.md b/README.md index 50f92c5..876414f 100644 --- a/README.md +++ b/README.md @@ -57,6 +57,18 @@ You can also specify an output file in [BCF](http://samtools.github.io/bcftools/ `bcftools view delly.bcf > delly.vcf` +Example +------- + +A small example is included for short-read, long-read and copy-number variant calling. + +`delly call -g example/ref.fa example/sr.bam > sr.vcf` + +`delly lr -g example/ref.fa example/lr.bam > lr.vcf` + +`delly cnv -g example/ref.fa -m example/map.fa.gz example/sr.bam > cnv.vcf` + + Somatic SV calling ------------------