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Inconsistency between .values and .stats #153

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ClaudeHu opened this issue Jan 10, 2025 · 0 comments

ClaudeHu commented Jan 10, 2025

The bigwig file is zipped and attached.

import pyBigWig
import numpy as np
bw = pyBigWig.open("/home/claudehu/Desktop/trials/npy_bw_after_fix/bw/all_core.bw")

bw_stat = bw.stats("chr19", 25152933, 47624655, type='max')

chroms = bw.chroms()
bw_track = bw.values("chr19", 0, chroms["chr19"], numpy=True) # [2.0]
bw_np_stat = np.max(bw_track[25152933:47624655]) # 1.0

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