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call_fts3.yml
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# Forked from eKatchko/public-bioinformatics-databases
name: Process changed files
# Controls when the workflow will run
on:
pull_request:
branches:
- 'main'
paths:
- 'databases/**.json'
workflow_dispatch:
inputs:
base:
type: string
default: main
required: true
head:
type: string
required: true
jobs:
# This workflow contains a single job called "changed-files"
changed-files:
# The type of runner that the job will run on
runs-on: [self-hosted, fts3-client-production ]
environment: APPROVAL_REQUIRED
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Get changed files with git diff
id: git-diff
run: |
git_diff_output=$(git diff --name-only origin/${{ github.base_ref || github.event.inputs.base }} origin/${{ github.head_ref || github.event.inputs.head }} | grep databases/)
- name: Send changed files to fts3-connector
if: steps.git-diff.outputs.files != ''
run: |
git_diff_output="${{ steps.git-diff.outputs.files}}"
for file in $git_diff_output; do
echo "Calling with $file"
curl -H "X-AUTH-HEADER: ${{ secrets.FTS3_CLIENT_API_KEY }}" -H "Content-Type: application/json" -X POST -d @"$file" "${{ secrets.FTS3_CLIENT_ENDPOINT }}/transfer/dry"
done
- name: Skip if no changed files
if: steps.git-diff.outputs.files == ''
run: |
echo "No changed files found in the 'databases/' directory. Skipping the step."