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Confuse about the Input #1

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wbaopaul opened this issue Apr 26, 2019 · 1 comment
Open

Confuse about the Input #1

wbaopaul opened this issue Apr 26, 2019 · 1 comment

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@wbaopaul
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I am not clear about what kind of input files I should provided:
A cell by peak matrix plus genome sequence? Thanks.
@Carldeboer
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Sorry for the late reply!
The expected input is a matrix of kmers (rows) vs samples (columns) with the observed frequencies of each k-mer adjacent to the read mapping locations for each sample. This is what is created by the inputKMerFreqs function after having run the Brockman command line tool, which create k-mer frequency vectors for each sample.

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@wbaopaul @Carldeboer