From 84e51dd57e69fc34ecb6082b0cb0a02e4c0cafb8 Mon Sep 17 00:00:00 2001
From: lima1 <mriester@gmx.de>
Date: Sun, 24 May 2020 12:30:25 -0400
Subject: [PATCH] Fixed build error of previous commit.

---
 NEWS                | 2 +-
 R/filterVcfMuTect.R | 6 ++++--
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/NEWS b/NEWS
index 40904215..2be6b4ba 100755
--- a/NEWS
+++ b/NEWS
@@ -1,4 +1,4 @@
-Changes in version 1.19.1
+Changes in version 1.20.0
 -------------------------
 
 SIGNIFICANT USER-VISIBLE CHANGES
diff --git a/R/filterVcfMuTect.R b/R/filterVcfMuTect.R
index 8f187b9c..260692f3 100644
--- a/R/filterVcfMuTect.R
+++ b/R/filterVcfMuTect.R
@@ -87,7 +87,9 @@ ignore=c("clustered_read_position", "fstar_tumor_lod", "nearby_gap_events",
     
 .detectCaller <- function(vcf) {
     gatkVersion <- meta(header(vcf))[["GATKCommandLine"]]$Version[1]
-    gatkVersion <- gsub("\\\"", "", gatkVersion)
-    if (!is.null(gatkVersion) && grepl("^4", gatkVersion)) return("MuTect2/GATK4")
+    if (!is.null(gatkVersion)) {
+        gatkVersion <- gsub("\\\"", "", gatkVersion)
+        if (grepl("^4", gatkVersion)) return("MuTect2/GATK4")
+    }    
     return("")
 }