Cable filter doesn't work well

[EstherXSD]

Hi, this is Shudi from the Uchida Lab. We previously did fiber photometry with novelty task and planned to analyzed the behavioral videos. In order to filter the cable, we used the cable-filter-iters 1. However, the cable was still obvious in the processed video.

Expected Behavior

I expect the cable-filter-iters would filter the cable.

Current Behavior

The cable-filter-iters doesn't filter the cable.

for dir in session*/; do moseq2-extract extract $dir/depth.dat --flip-classifier /home/alex/moseq2/flip_classifier_k2_c57_10to13weeks.pkl --bg-roi-dilate 75 75 --use-tracking-model True --cable-filter-iters 1 done

The result video: https://drive.google.com/file/d/1BceRlmJ3SG1W11or2xcshDG5kAbjLDPY/view?usp=sharing
The process configuration: https://drive.google.com/file/d/1qJcAszWhBJpMwS9HV5A6EnDJz-FHQLFm/view?usp=sharing

Your Environment

• Version/GitHub branch used:
• Device: Computer
• OS: Ubuntu
• Link to your project: video analysis

[NadineKGut]

We have the same problem (Mena Lab). Unfortunately, none of the filter sizes nor changes in the parameters of the tracking model could fix that. We just proceeded by discarding the worst videos. But we are still struggling to get the explained variance by first 5-10 syllables above 80%.