From 6256eda168fe121791ec64ac155c0f2c699dd2e5 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Fri, 13 Sep 2024 10:47:50 -0500
Subject: [PATCH 01/42] WIP basic conda image from
 jupyter/docker-stacks-foundation

---
 Dockerfile             | 6 ++++--
 LNX-docker-compose.yml | 6 ++++++
 2 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 59da930a5..789e4e7b1 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,7 +1,9 @@
-ARG IMAGE=djbase
+ARG IMAGE=jupyter/docker-stacks-foundation
 ARG PY_VER=3.9
 ARG DISTRO=debian
-FROM datajoint/${IMAGE}:py${PY_VER}-${DISTRO}
+FROM ${IMAGE}
+RUN conda install -y -n base -c conda-forge python=${PY_VER} && \
+    conda clean -afy
 COPY --chown=anaconda:anaconda ./setup.py ./datajoint.pub ./requirements.txt /main/
 COPY --chown=anaconda:anaconda ./datajoint /main/datajoint
 RUN \
diff --git a/LNX-docker-compose.yml b/LNX-docker-compose.yml
index d476ed939..470157569 100644
--- a/LNX-docker-compose.yml
+++ b/LNX-docker-compose.yml
@@ -60,6 +60,12 @@ services:
   app:
     <<: *net
     image: datajoint/djtest:py${PY_VER:-3.8}-${DISTRO:-alpine}
+    build:
+      context: .
+      dockerfile: Dockerfile
+      args:
+        PY_VER: ${PY_VER:-3.8}
+        DISTRO: ${DISTRO:-alpine}
     depends_on:
       db:
         condition: service_healthy

From 2d083bba84adab34225b35e368d92d008851f08f Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 18:43:45 -0500
Subject: [PATCH 02/42] Remove unnecessary files for build

---
 MANIFEST.in              |  1 -
 local-docker-compose.yml | 66 ----------------------------------------
 2 files changed, 67 deletions(-)
 delete mode 100644 MANIFEST.in
 delete mode 100644 local-docker-compose.yml

diff --git a/MANIFEST.in b/MANIFEST.in
deleted file mode 100644
index ab30e9ace..000000000
--- a/MANIFEST.in
+++ /dev/null
@@ -1 +0,0 @@
-include *.txt
diff --git a/local-docker-compose.yml b/local-docker-compose.yml
deleted file mode 100644
index 62b52ad66..000000000
--- a/local-docker-compose.yml
+++ /dev/null
@@ -1,66 +0,0 @@
-# MYSQL_VER=5.7 MINIO_VER=RELEASE.2022-08-11T04-37-28Z docker compose -f local-docker-compose.yml up --build
-version: "2.4"
-x-net:
-  &net
-  networks:
-    - main
-services:
-  db:
-    <<: *net
-    image: datajoint/mysql:${MYSQL_VER}
-    environment:
-      - MYSQL_ROOT_PASSWORD=${DJ_PASS}
-    # ports:
-    #   - "3306:3306"
-    # To persist MySQL data
-    # volumes:
-    #   - ./mysql/data:/var/lib/mysql
-    healthcheck:
-      test: [ "CMD", "mysqladmin", "ping", "-h", "localhost" ]
-      timeout: 30s
-      retries: 5
-      interval: 15s
-  minio:
-    <<: *net
-    image: minio/minio:${MINIO_VER}
-    environment:
-      - MINIO_ACCESS_KEY=datajoint
-      - MINIO_SECRET_KEY=datajoint
-    # ports:
-    #   - "9000:9000"
-    # To persist MinIO data and config
-    # volumes:
-    #   - ./minio/data:/data
-    #   - ./minio/config:/root/.minio
-    command: server --address ":9000" /data
-    healthcheck:
-      test:
-        [
-          "CMD",
-          "curl",
-          "--fail",
-          "http://minio:9000/minio/health/live"
-        ]
-      timeout: 30s
-      retries: 5
-      interval: 15s
-  fakeservices.datajoint.io:
-    <<: *net
-    image: datajoint/nginx:v0.2.6
-    environment:
-      - ADD_db_TYPE=DATABASE
-      - ADD_db_ENDPOINT=db:3306
-      - ADD_minio_TYPE=MINIO
-      - ADD_minio_ENDPOINT=minio:9000
-      - ADD_minio_PORT=80 # allow unencrypted connections
-      - ADD_minio_PREFIX=/datajoint
-      - ADD_browser_TYPE=MINIOADMIN
-      - ADD_browser_ENDPOINT=minio:9000
-      - ADD_browser_PORT=80 # allow unencrypted connections
-    ports:
-      - "80:80"
-      - "443:443"
-      - "3306:3306"
-      - "9000:9000"
-networks:
-  main:

From 65fb4d4669140b4b2666b9cdf6b9f489a78242fb Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 18:43:59 -0500
Subject: [PATCH 03/42] Basic pyproject.toml from poetry init

---
 pyproject.toml | 15 +++++++++++++++
 1 file changed, 15 insertions(+)
 create mode 100644 pyproject.toml

diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 000000000..a6c6ad04a
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,15 @@
+[tool.poetry]
+name = "datajoint-python"
+version = "0.14.2"
+description = "A relational data framework for scientific data pipelines with MySQL backend."
+authors = ["Ethan Ho <53266718+ethho@users.noreply.github.com>"]
+license = "MIT"
+readme = "README.md"
+
+[tool.poetry.dependencies]
+python = "^3.11"
+
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"

From 0c297ff62d1ebb517a8116db7faa41a1ab7c272a Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 18:48:06 -0500
Subject: [PATCH 04/42] Basic pyproject.toml from python.org

https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#a-full-example
---
 pyproject.toml | 63 ++++++++++++++++++++++++++++++++++++++++----------
 1 file changed, 51 insertions(+), 12 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index a6c6ad04a..ae95cbd17 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,15 +1,54 @@
-[tool.poetry]
-name = "datajoint-python"
-version = "0.14.2"
-description = "A relational data framework for scientific data pipelines with MySQL backend."
-authors = ["Ethan Ho <53266718+ethho@users.noreply.github.com>"]
-license = "MIT"
-readme = "README.md"
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
 
-[tool.poetry.dependencies]
-python = "^3.11"
+[project]
+name = "spam-eggs"
+version = "2020.0.0"
+dependencies = [
+  "httpx",
+  "gidgethub[httpx]>4.0.0",
+  "django>2.1; os_name != 'nt'",
+  "django>2.0; os_name == 'nt'",
+]
+requires-python = ">=3.8"
+authors = [
+  {name = "Pradyun Gedam", email = "pradyun@example.com"},
+  {name = "Tzu-Ping Chung", email = "tzu-ping@example.com"},
+  {name = "Another person"},
+  {email = "different.person@example.com"},
+]
+maintainers = [
+  {name = "Brett Cannon", email = "brett@example.com"}
+]
+description = "Lovely Spam! Wonderful Spam!"
+readme = "README.rst"
+license = {file = "LICENSE.txt"}
+keywords = ["egg", "bacon", "sausage", "tomatoes", "Lobster Thermidor"]
+classifiers = [
+  "Development Status :: 4 - Beta",
+  "Programming Language :: Python"
+]
 
+[project.optional-dependencies]
+gui = ["PyQt5"]
+cli = [
+  "rich",
+  "click",
+]
 
-[build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
+[project.urls]
+Homepage = "https://example.com"
+Documentation = "https://readthedocs.org"
+Repository = "https://github.com/me/spam.git"
+"Bug Tracker" = "https://github.com/me/spam/issues"
+Changelog = "https://github.com/me/spam/blob/master/CHANGELOG.md"
+
+[project.scripts]
+spam-cli = "spam:main_cli"
+
+[project.gui-scripts]
+spam-gui = "spam:main_gui"
+
+[project.entry-points."spam.magical"]
+tomatoes = "spam:main_tomatoes"
\ No newline at end of file

From 77cf1c636e9924433a8bcb7fe053b50e7da52685 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:08:09 -0500
Subject: [PATCH 05/42] First pass pyproject.toml

---
 datajoint.pub    |  6 ----
 pyproject.toml   | 81 +++++++++++++++++++++++++++---------------------
 requirements.txt | 13 --------
 3 files changed, 45 insertions(+), 55 deletions(-)
 delete mode 100644 datajoint.pub
 delete mode 100644 requirements.txt

diff --git a/datajoint.pub b/datajoint.pub
deleted file mode 100644
index 4aaa823d2..000000000
--- a/datajoint.pub
+++ /dev/null
@@ -1,6 +0,0 @@
------BEGIN PUBLIC KEY-----
-MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQDUMOo2U7YQ1uOrKU/IreM3AQP2
-AXJC3au+S9W+dilxHcJ3e98bRVqrFeOofcGeRPoNc38fiLmLDUiBskJeVrpm29Wo
-AkH6yhZWk1o8NvGMhK4DLsJYlsH6tZuOx9NITKzJuOOH6X1I5Ucs7NOSKnmu7g5g
-WTT5kCgF5QAe5JN8WQIDAQAB
------END PUBLIC KEY-----
diff --git a/pyproject.toml b/pyproject.toml
index ae95cbd17..af3a39dd8 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,54 +1,63 @@
-[build-system]
-requires = ["hatchling"]
-build-backend = "hatchling.build"
-
 [project]
-name = "spam-eggs"
-version = "2020.0.0"
+name = "datajoint"
+version = "0.14.2"
 dependencies = [
-  "httpx",
-  "gidgethub[httpx]>4.0.0",
-  "django>2.1; os_name != 'nt'",
-  "django>2.0; os_name == 'nt'",
+  "numpy",
+  "pymysql>=0.7.2",
+  "pyparsing",
+  "ipython",
+  "pandas",
+  "tqdm",
+  "networkx",
+  "pydot",
+  "minio>=7.0.0",
+  "matplotlib",
+  "cryptography",
+  "urllib3"
 ]
-requires-python = ">=3.8"
+requires-python = ">=3.8,<4.0"
 authors = [
-  {name = "Pradyun Gedam", email = "pradyun@example.com"},
-  {name = "Tzu-Ping Chung", email = "tzu-ping@example.com"},
-  {name = "Another person"},
-  {email = "different.person@example.com"},
+  {name = "Dimitri Yatsenko", email = "dimitri@datajoint.com"},
+  {name = "Raphael Guzman"},
+  {name = "Edgar Walker"},
+  {name = "DataJoint Contributors", email = "support@datajoint.com"},
 ]
 maintainers = [
-  {name = "Brett Cannon", email = "brett@example.com"}
+  {name = "Dimitri Yatsenko", email = "dimitri@datajoint.com"},
+  {name = "DataJoint Contributors", email = "support@datajoint.com"},
 ]
-description = "Lovely Spam! Wonderful Spam!"
-readme = "README.rst"
+description = "A relational data pipeline framework."
+readme = "README.md"
 license = {file = "LICENSE.txt"}
-keywords = ["egg", "bacon", "sausage", "tomatoes", "Lobster Thermidor"]
+keywords = [
+    "database",
+    "data pipelines",
+    "scientific computing",
+    "automated research workflows",
+]
 classifiers = [
-  "Development Status :: 4 - Beta",
   "Programming Language :: Python"
 ]
 
 [project.optional-dependencies]
-gui = ["PyQt5"]
-cli = [
-  "rich",
-  "click",
+test = [
+  "pytest",
+  "pytest-cov",
+  "black==24.2.0",
+  "flake8",
 ]
 
 [project.urls]
-Homepage = "https://example.com"
-Documentation = "https://readthedocs.org"
-Repository = "https://github.com/me/spam.git"
-"Bug Tracker" = "https://github.com/me/spam/issues"
-Changelog = "https://github.com/me/spam/blob/master/CHANGELOG.md"
+Homepage = "https://datajoint.com/docs"
+Documentation = "https://datajoint.com/docs"
+Repository = "https://github.com/datajoint/datajoint-python"
+"Bug Tracker" = "https://github.com/datajoint/datajoint-python/issues"
+Changelog = "https://github.com/datajoint/datajoint-python/blob/master/CHANGELOG.md"
 
-[project.scripts]
-spam-cli = "spam:main_cli"
+[project.entry-points."console_scripts"]
+dj = "datajoint.cli:cli"
+datajoint = "datajoint.cli:cli"
 
-[project.gui-scripts]
-spam-gui = "spam:main_gui"
-
-[project.entry-points."spam.magical"]
-tomatoes = "spam:main_tomatoes"
\ No newline at end of file
+[build-system]
+requires = ["setuptools >= 61.0"]
+build-backend = "setuptools.build_meta"
diff --git a/requirements.txt b/requirements.txt
deleted file mode 100644
index 65c0c8b6f..000000000
--- a/requirements.txt
+++ /dev/null
@@ -1,13 +0,0 @@
-numpy
-pymysql>=0.7.2
-pyparsing
-ipython
-pandas
-tqdm
-networkx
-pydot
-minio>=7.0.0
-matplotlib
-cryptography
-otumat
-urllib3

From 65446a71e55d7a50f3f8ede87f3f8560e2afcdc0 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:16:07 -0500
Subject: [PATCH 06/42] rm setup.py

---
 setup.py | 49 -------------------------------------------------
 1 file changed, 49 deletions(-)
 delete mode 100644 setup.py

diff --git a/setup.py b/setup.py
deleted file mode 100644
index e280038ce..000000000
--- a/setup.py
+++ /dev/null
@@ -1,49 +0,0 @@
-#!/usr/bin/env python
-from setuptools import setup, find_packages
-from os import path
-import sys
-
-min_py_version = (3, 8)
-
-if sys.version_info < min_py_version:
-    sys.exit(
-        "DataJoint is only supported for Python {}.{} or higher".format(*min_py_version)
-    )
-
-here = path.abspath(path.dirname(__file__))
-
-long_description = (
-    "A relational data framework for scientific data pipelines with MySQL backend."
-)
-
-# read in version number into __version__
-with open(path.join(here, "datajoint", "version.py")) as f:
-    exec(f.read())
-
-with open(path.join(here, "requirements.txt")) as f:
-    requirements = [line.split("#", 1)[0].rstrip() for line in f.readlines()]
-
-setup(
-    name="datajoint",
-    version=__version__,
-    description="A relational data pipeline framework.",
-    long_description=long_description,
-    author="DataJoint Contributors",
-    author_email="support@datajoint.com",
-    license="GNU LGPL",
-    url="https://datajoint.com",
-    keywords=[
-        "database",
-        "data pipelines",
-        "scientific computing",
-        "automated research workflows",
-    ],
-    packages=find_packages(exclude=["contrib", "docs", "tests*"]),
-    entry_points={
-        "console_scripts": ["dj=datajoint.cli:cli", "datajoint=datajoint.cli:cli"],
-    },
-    install_requires=requirements,
-    python_requires="~={}.{}".format(*min_py_version),
-    setup_requires=["otumat"],  # maybe remove due to conflicts?
-    pubkey_path="./datajoint.pub",
-)

From bbf39574e574d36609700e273c45c420a3064530 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:16:25 -0500
Subject: [PATCH 07/42] Clean up Docker compose

---
 LNX-docker-compose.yml | 68 +++++++++---------------------------------
 1 file changed, 14 insertions(+), 54 deletions(-)

diff --git a/LNX-docker-compose.yml b/LNX-docker-compose.yml
index 470157569..df8e2fc34 100644
--- a/LNX-docker-compose.yml
+++ b/LNX-docker-compose.yml
@@ -1,12 +1,6 @@
-# PY_VER=3.8 MYSQL_VER=5.7 DISTRO=alpine MINIO_VER=RELEASE.2022-08-11T04-37-28Z HOST_UID=$(id -u) docker compose -f LNX-docker-compose.yml up --exit-code-from app --build
-version: "2.4"
-x-net:
-  &net
-  networks:
-    - main
+# docker compose up --exit-code-from app --build
 services:
   db:
-    <<: *net
     image: datajoint/mysql:${MYSQL_VER:-8.0}
     environment:
       - MYSQL_ROOT_PASSWORD=${DJ_PASS:-password}
@@ -21,7 +15,6 @@ services:
       retries: 5
       interval: 15s
   minio:
-    <<: *net
     image: minio/minio:${MINIO_VER:-RELEASE.2022-08-11T04-37-28Z}
     environment:
       - MINIO_ACCESS_KEY=datajoint
@@ -34,74 +27,41 @@ services:
     command: server --address ":9000" /data
     healthcheck:
       test:
-        [
-          "CMD",
-          "curl",
-          "--fail",
-          "http://minio:9000/minio/health/live"
-        ]
+        - "CMD"
+        - "curl"
+        - "--fail"
+        - "http://minio:9000/minio/health/live"
       timeout: 30s
       retries: 5
       interval: 15s
-  fakeservices.datajoint.io:
-    <<: *net
-    image: datajoint/nginx:latest
-    environment:
-      - ADD_db_TYPE=DATABASE
-      - ADD_db_ENDPOINT=db:3306
-      - ADD_minio_TYPE=MINIO
-      - ADD_minio_ENDPOINT=minio:9000
-      - ADD_minio_PORT=80 # allow unencrypted connections
-      - ADD_minio_PREFIX=/datajoint
-    # ports:
-    #   - "80:80"
-    #   - "443:443"
-    #   - "3306:3306"
   app:
-    <<: *net
-    image: datajoint/djtest:py${PY_VER:-3.8}-${DISTRO:-alpine}
+    image: datajoint/datajoint-python:py${PY_VER:-3.8}
     build:
       context: .
       dockerfile: Dockerfile
       args:
         PY_VER: ${PY_VER:-3.8}
-        DISTRO: ${DISTRO:-alpine}
     depends_on:
       db:
         condition: service_healthy
       minio:
         condition: service_healthy
-      fakeservices.datajoint.io:
-        condition: service_healthy
     environment:
-      - DJ_HOST=fakeservices.datajoint.io
+      - DJ_HOST=db
       - DJ_USER=root
       - DJ_PASS=password
-      - DJ_TEST_HOST=fakeservices.datajoint.io
+      - DJ_TEST_HOST=db
       - DJ_TEST_USER=datajoint
       - DJ_TEST_PASSWORD=datajoint
-      - S3_ENDPOINT=fakeservices.datajoint.io
+      - S3_ENDPOINT=db
       - S3_ACCESS_KEY=datajoint
       - S3_SECRET_KEY=datajoint
       - S3_BUCKET=datajoint.test
       - PYTHON_USER=dja
       - JUPYTER_PASSWORD=datajoint
-      - DISPLAY
     working_dir: /src
-    command:
-      - sh
-      - -c
-      - |
-        set -e
-        pip install -e .
-        pip list --format=freeze | grep datajoint
-        pytest -sv --cov-report term-missing --cov=datajoint tests
-    # ports:
-    #   - "8888:8888"
-    user: ${HOST_UID:-1000}:anaconda
-    volumes:
-      - .:/src
-      - /tmp/.X11-unix:/tmp/.X11-unix:rw
-      # - ./notebooks:/home/dja/notebooks
-networks:
-  main:
+    command: |
+      pip install -e ".[test]"
+      pip show datajoint
+      pytest -sv --cov-report term-missing --cov=datajoint tests
+

From f1b065e700b883b2c4255e00c03bdfae7b080e72 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:17:34 -0500
Subject: [PATCH 08/42] Move LNX-*.yml to docker-compose.yaml

Standard file name
---
 .devcontainer/devcontainer.json               | 2 +-
 .github/workflows/development.yaml            | 2 +-
 LNX-docker-compose.yml => docker-compose.yaml | 0
 3 files changed, 2 insertions(+), 2 deletions(-)
 rename LNX-docker-compose.yml => docker-compose.yaml (100%)

diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
index d6d396f66..022665ada 100644
--- a/.devcontainer/devcontainer.json
+++ b/.devcontainer/devcontainer.json
@@ -5,7 +5,7 @@
 	// Update the 'dockerComposeFile' list if you have more compose files or use different names.
 	// The .devcontainer/docker-compose.yml file contains any overrides you need/want to make.
 	"dockerComposeFile": [
-		"../LNX-docker-compose.yml",
+		"../docker-compose.yaml",
 		"docker-compose.yml"
 	],
 	// The 'service' property is the name of the service for the container that VS Code should
diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index 20af49a0c..459b43e32 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -87,7 +87,7 @@ jobs:
           COMPOSE_HTTP_TIMEOUT: "120"
         run: |
           export HOST_UID=$(id -u)
-          docker compose -f LNX-docker-compose.yml up --build --exit-code-from app
+          docker compose up --build --exit-code-from app
   lint:
     runs-on: ubuntu-latest
     strategy:
diff --git a/LNX-docker-compose.yml b/docker-compose.yaml
similarity index 100%
rename from LNX-docker-compose.yml
rename to docker-compose.yaml

From 7663e67b81e3a01f2e6c664b2567d361a378e848 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:30:18 -0500
Subject: [PATCH 09/42] Minimal Dockerfile

---
 Dockerfile | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 789e4e7b1..bde35b51d 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,11 +1,11 @@
-ARG IMAGE=jupyter/docker-stacks-foundation
 ARG PY_VER=3.9
-ARG DISTRO=debian
+ARG IMAGE=jupyter/docker-stacks-foundation
 FROM ${IMAGE}
+USER jovyan
 RUN conda install -y -n base -c conda-forge python=${PY_VER} && \
     conda clean -afy
-COPY --chown=anaconda:anaconda ./setup.py ./datajoint.pub ./requirements.txt /main/
-COPY --chown=anaconda:anaconda ./datajoint /main/datajoint
+COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt /main/
+COPY --chown=1000:100 ./datajoint /main/datajoint
 RUN \
     pip install --no-cache-dir /main && \
     rm -r /main/*

From f8b02dddef786526c6a1b18431ac88cdfc579bd3 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:35:38 -0500
Subject: [PATCH 10/42] Deprecate datajoint.plugin and otumat

---
 datajoint/errors.py  | 14 +----------
 datajoint/plugin.py  | 44 ---------------------------------
 tests/test_plugin.py | 59 --------------------------------------------
 3 files changed, 1 insertion(+), 116 deletions(-)
 delete mode 100644 datajoint/plugin.py
 delete mode 100644 tests/test_plugin.py

diff --git a/datajoint/errors.py b/datajoint/errors.py
index 427e8d1ad..214d1e88c 100644
--- a/datajoint/errors.py
+++ b/datajoint/errors.py
@@ -17,19 +17,7 @@ class DataJointError(Exception):
     """
 
     def __init__(self, *args):
-        from .plugin import connection_plugins, type_plugins
-
-        self.__cause__ = (
-            PluginWarning("Unverified DataJoint plugin detected.")
-            if any(
-                [
-                    any([not plugins[k]["verified"] for k in plugins])
-                    for plugins in [connection_plugins, type_plugins]
-                    if plugins
-                ]
-            )
-            else None
-        )
+        super().__init__(*args)
 
     def suggest(self, *args):
         """
diff --git a/datajoint/plugin.py b/datajoint/plugin.py
deleted file mode 100644
index 48dce6561..000000000
--- a/datajoint/plugin.py
+++ /dev/null
@@ -1,44 +0,0 @@
-from .settings import config
-import pkg_resources
-from pathlib import Path
-from cryptography.exceptions import InvalidSignature
-from otumat import hash_pkg, verify
-import logging
-
-logger = logging.getLogger(__name__.split(".")[0])
-
-
-def _update_error_stack(plugin_name):
-    try:
-        base_name = "datajoint"
-        base_meta = pkg_resources.get_distribution(base_name)
-        plugin_meta = pkg_resources.get_distribution(plugin_name)
-
-        data = hash_pkg(pkgpath=str(Path(plugin_meta.module_path, plugin_name)))
-        signature = plugin_meta.get_metadata(f"{plugin_name}.sig")
-        pubkey_path = str(Path(base_meta.egg_info, f"{base_name}.pub"))
-        verify(pubkey_path=pubkey_path, data=data, signature=signature)
-        logger.info(f"DataJoint verified plugin `{plugin_name}` detected.")
-        return True
-    except (FileNotFoundError, InvalidSignature):
-        logger.warning(f"Unverified plugin `{plugin_name}` detected.")
-        return False
-
-
-def _import_plugins(category):
-    return {
-        entry_point.name: dict(
-            object=entry_point,
-            verified=_update_error_stack(entry_point.module_name.split(".")[0]),
-        )
-        for entry_point in pkg_resources.iter_entry_points(
-            "datajoint_plugins.{}".format(category)
-        )
-        if "plugin" not in config
-        or category not in config["plugin"]
-        or entry_point.module_name.split(".")[0] in config["plugin"][category]
-    }
-
-
-connection_plugins = _import_plugins("connection")
-type_plugins = _import_plugins("datatype")
diff --git a/tests/test_plugin.py b/tests/test_plugin.py
deleted file mode 100644
index 95933d2ff..000000000
--- a/tests/test_plugin.py
+++ /dev/null
@@ -1,59 +0,0 @@
-import pytest
-import datajoint.errors as djerr
-import datajoint.plugin as p
-import pkg_resources
-from os import path
-
-
-def test_check_pubkey():
-    base_name = "datajoint"
-    base_meta = pkg_resources.get_distribution(base_name)
-    pubkey_meta = base_meta.get_metadata("{}.pub".format(base_name))
-
-    with open(
-        path.join(path.abspath(path.dirname(__file__)), "..", "datajoint.pub"), "r"
-    ) as f:
-        assert f.read() == pubkey_meta
-
-
-def test_normal_djerror():
-    try:
-        raise djerr.DataJointError
-    except djerr.DataJointError as e:
-        assert e.__cause__ is None
-
-
-def test_verified_djerror(category="connection"):
-    try:
-        curr_plugins = getattr(p, "{}_plugins".format(category))
-        setattr(
-            p,
-            "{}_plugins".format(category),
-            dict(test_plugin_id=dict(verified=True, object="example")),
-        )
-        raise djerr.DataJointError
-    except djerr.DataJointError as e:
-        setattr(p, "{}_plugins".format(category), curr_plugins)
-        assert e.__cause__ is None
-
-
-def test_verified_djerror_type():
-    test_verified_djerror(category="type")
-
-
-def test_unverified_djerror(category="connection"):
-    try:
-        curr_plugins = getattr(p, "{}_plugins".format(category))
-        setattr(
-            p,
-            "{}_plugins".format(category),
-            dict(test_plugin_id=dict(verified=False, object="example")),
-        )
-        raise djerr.DataJointError("hello")
-    except djerr.DataJointError as e:
-        setattr(p, "{}_plugins".format(category), curr_plugins)
-        assert isinstance(e.__cause__, djerr.PluginWarning)
-
-
-def test_unverified_djerror_type():
-    test_unverified_djerror(category="type")

From 4cdfe4ff9adbd604cbf0362d12def4fa15e8b9a5 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:46:49 -0500
Subject: [PATCH 11/42] docker compose runs pytests

---
 docker-compose.yaml | 14 ++++++++++----
 pyproject.toml      |  3 +++
 2 files changed, 13 insertions(+), 4 deletions(-)

diff --git a/docker-compose.yaml b/docker-compose.yaml
index df8e2fc34..2306c3a2a 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -60,8 +60,14 @@ services:
       - PYTHON_USER=dja
       - JUPYTER_PASSWORD=datajoint
     working_dir: /src
-    command: |
-      pip install -e ".[test]"
-      pip show datajoint
-      pytest -sv --cov-report term-missing --cov=datajoint tests
+    volumes:
+      - .:/src
+    command:
+      - sh
+      - -c
+      - |
+        set -e
+        pip install -e ".[test]"
+        pip show datajoint
+        pytest -sv --cov-report term-missing --cov=datajoint tests
 
diff --git a/pyproject.toml b/pyproject.toml
index af3a39dd8..1ecc635b7 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -58,6 +58,9 @@ Changelog = "https://github.com/datajoint/datajoint-python/blob/master/CHANGELOG
 dj = "datajoint.cli:cli"
 datajoint = "datajoint.cli:cli"
 
+[tool.setuptools]
+packages = ["datajoint"]
+
 [build-system]
 requires = ["setuptools >= 61.0"]
 build-backend = "setuptools.build_meta"

From b08150ab1505e0b4256119083e9314c770622ade Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:48:04 -0500
Subject: [PATCH 12/42] Revert to using datajoint.plugin

---
 datajoint.pub        |  6 +++++
 datajoint/errors.py  | 14 ++++++++++-
 datajoint/plugin.py  | 44 +++++++++++++++++++++++++++++++++
 tests/test_plugin.py | 59 ++++++++++++++++++++++++++++++++++++++++++++
 4 files changed, 122 insertions(+), 1 deletion(-)
 create mode 100644 datajoint.pub
 create mode 100644 datajoint/plugin.py
 create mode 100644 tests/test_plugin.py

diff --git a/datajoint.pub b/datajoint.pub
new file mode 100644
index 000000000..4aaa823d2
--- /dev/null
+++ b/datajoint.pub
@@ -0,0 +1,6 @@
+-----BEGIN PUBLIC KEY-----
+MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQDUMOo2U7YQ1uOrKU/IreM3AQP2
+AXJC3au+S9W+dilxHcJ3e98bRVqrFeOofcGeRPoNc38fiLmLDUiBskJeVrpm29Wo
+AkH6yhZWk1o8NvGMhK4DLsJYlsH6tZuOx9NITKzJuOOH6X1I5Ucs7NOSKnmu7g5g
+WTT5kCgF5QAe5JN8WQIDAQAB
+-----END PUBLIC KEY-----
diff --git a/datajoint/errors.py b/datajoint/errors.py
index 214d1e88c..427e8d1ad 100644
--- a/datajoint/errors.py
+++ b/datajoint/errors.py
@@ -17,7 +17,19 @@ class DataJointError(Exception):
     """
 
     def __init__(self, *args):
-        super().__init__(*args)
+        from .plugin import connection_plugins, type_plugins
+
+        self.__cause__ = (
+            PluginWarning("Unverified DataJoint plugin detected.")
+            if any(
+                [
+                    any([not plugins[k]["verified"] for k in plugins])
+                    for plugins in [connection_plugins, type_plugins]
+                    if plugins
+                ]
+            )
+            else None
+        )
 
     def suggest(self, *args):
         """
diff --git a/datajoint/plugin.py b/datajoint/plugin.py
new file mode 100644
index 000000000..48dce6561
--- /dev/null
+++ b/datajoint/plugin.py
@@ -0,0 +1,44 @@
+from .settings import config
+import pkg_resources
+from pathlib import Path
+from cryptography.exceptions import InvalidSignature
+from otumat import hash_pkg, verify
+import logging
+
+logger = logging.getLogger(__name__.split(".")[0])
+
+
+def _update_error_stack(plugin_name):
+    try:
+        base_name = "datajoint"
+        base_meta = pkg_resources.get_distribution(base_name)
+        plugin_meta = pkg_resources.get_distribution(plugin_name)
+
+        data = hash_pkg(pkgpath=str(Path(plugin_meta.module_path, plugin_name)))
+        signature = plugin_meta.get_metadata(f"{plugin_name}.sig")
+        pubkey_path = str(Path(base_meta.egg_info, f"{base_name}.pub"))
+        verify(pubkey_path=pubkey_path, data=data, signature=signature)
+        logger.info(f"DataJoint verified plugin `{plugin_name}` detected.")
+        return True
+    except (FileNotFoundError, InvalidSignature):
+        logger.warning(f"Unverified plugin `{plugin_name}` detected.")
+        return False
+
+
+def _import_plugins(category):
+    return {
+        entry_point.name: dict(
+            object=entry_point,
+            verified=_update_error_stack(entry_point.module_name.split(".")[0]),
+        )
+        for entry_point in pkg_resources.iter_entry_points(
+            "datajoint_plugins.{}".format(category)
+        )
+        if "plugin" not in config
+        or category not in config["plugin"]
+        or entry_point.module_name.split(".")[0] in config["plugin"][category]
+    }
+
+
+connection_plugins = _import_plugins("connection")
+type_plugins = _import_plugins("datatype")
diff --git a/tests/test_plugin.py b/tests/test_plugin.py
new file mode 100644
index 000000000..95933d2ff
--- /dev/null
+++ b/tests/test_plugin.py
@@ -0,0 +1,59 @@
+import pytest
+import datajoint.errors as djerr
+import datajoint.plugin as p
+import pkg_resources
+from os import path
+
+
+def test_check_pubkey():
+    base_name = "datajoint"
+    base_meta = pkg_resources.get_distribution(base_name)
+    pubkey_meta = base_meta.get_metadata("{}.pub".format(base_name))
+
+    with open(
+        path.join(path.abspath(path.dirname(__file__)), "..", "datajoint.pub"), "r"
+    ) as f:
+        assert f.read() == pubkey_meta
+
+
+def test_normal_djerror():
+    try:
+        raise djerr.DataJointError
+    except djerr.DataJointError as e:
+        assert e.__cause__ is None
+
+
+def test_verified_djerror(category="connection"):
+    try:
+        curr_plugins = getattr(p, "{}_plugins".format(category))
+        setattr(
+            p,
+            "{}_plugins".format(category),
+            dict(test_plugin_id=dict(verified=True, object="example")),
+        )
+        raise djerr.DataJointError
+    except djerr.DataJointError as e:
+        setattr(p, "{}_plugins".format(category), curr_plugins)
+        assert e.__cause__ is None
+
+
+def test_verified_djerror_type():
+    test_verified_djerror(category="type")
+
+
+def test_unverified_djerror(category="connection"):
+    try:
+        curr_plugins = getattr(p, "{}_plugins".format(category))
+        setattr(
+            p,
+            "{}_plugins".format(category),
+            dict(test_plugin_id=dict(verified=False, object="example")),
+        )
+        raise djerr.DataJointError("hello")
+    except djerr.DataJointError as e:
+        setattr(p, "{}_plugins".format(category), curr_plugins)
+        assert isinstance(e.__cause__, djerr.PluginWarning)
+
+
+def test_unverified_djerror_type():
+    test_unverified_djerror(category="type")

From 04b90489576623077abd1e6e13b3ff456a170e02 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 20:15:56 -0500
Subject: [PATCH 13/42] Revert to using otumat and datajoint.pub

---
 Dockerfile          |  4 ++--
 docker-compose.yaml | 21 +++++++++++++++++----
 pyproject.toml      | 10 +++++++++-
 3 files changed, 28 insertions(+), 7 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index bde35b51d..43d39c580 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -2,9 +2,9 @@ ARG PY_VER=3.9
 ARG IMAGE=jupyter/docker-stacks-foundation
 FROM ${IMAGE}
 USER jovyan
-RUN conda install -y -n base -c conda-forge python=${PY_VER} && \
+RUN conda install -y -n base -c conda-forge python=${PY_VER} pydot networkx && \
     conda clean -afy
-COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt /main/
+COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt ./datajoint.pub /main/
 COPY --chown=1000:100 ./datajoint /main/datajoint
 RUN \
     pip install --no-cache-dir /main && \
diff --git a/docker-compose.yaml b/docker-compose.yaml
index 2306c3a2a..9365555b5 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -34,8 +34,21 @@ services:
       timeout: 30s
       retries: 5
       interval: 15s
+  fakeservices.datajoint.io:
+    image: datajoint/nginx:latest
+    environment:
+      - ADD_db_TYPE=DATABASE
+      - ADD_db_ENDPOINT=db:3306
+      - ADD_minio_TYPE=MINIO
+      - ADD_minio_ENDPOINT=minio:9000
+      - ADD_minio_PORT=80 # allow unencrypted connections
+      - ADD_minio_PREFIX=/datajoint
+    # ports:
+    #   - "80:80"
+    #   - "443:443"
+    #   - "3306:3306"
   app:
-    image: datajoint/datajoint-python:py${PY_VER:-3.8}
+    image: datajoint/datajoint:py${DJ_VERSION:-latest}
     build:
       context: .
       dockerfile: Dockerfile
@@ -47,13 +60,13 @@ services:
       minio:
         condition: service_healthy
     environment:
-      - DJ_HOST=db
+      - DJ_HOST=fakeservices.datajoint.io
       - DJ_USER=root
       - DJ_PASS=password
-      - DJ_TEST_HOST=db
+      - DJ_TEST_HOST=fakeservices.datajoint.io
       - DJ_TEST_USER=datajoint
       - DJ_TEST_PASSWORD=datajoint
-      - S3_ENDPOINT=db
+      - S3_ENDPOINT=fakeservices.datajoint.io
       - S3_ACCESS_KEY=datajoint
       - S3_SECRET_KEY=datajoint
       - S3_BUCKET=datajoint.test
diff --git a/pyproject.toml b/pyproject.toml
index 1ecc635b7..f7c5ec871 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -12,6 +12,8 @@ dependencies = [
   "pydot",
   "minio>=7.0.0",
   "matplotlib",
+  "otumat",
+  "faker",
   "cryptography",
   "urllib3"
 ]
@@ -61,6 +63,12 @@ datajoint = "datajoint.cli:cli"
 [tool.setuptools]
 packages = ["datajoint"]
 
+[tool.setuptools.package-data]
+datajoint = ["datajoint.pub"]
+
 [build-system]
-requires = ["setuptools >= 61.0"]
+requires = [
+    "setuptools>=60",
+    "setuptools-scm>=8.0"
+]
 build-backend = "setuptools.build_meta"

From 776849767bfee54e70940a94581e35f4665bb5a1 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 20:17:50 -0500
Subject: [PATCH 14/42] Many changes to CI/CD

---
 .github/workflows/development.yaml | 20 +++++++++++---------
 1 file changed, 11 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index 459b43e32..eb83e31f9 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -29,10 +29,13 @@ jobs:
       COMPOSE_HTTP_TIMEOUT: "120"
     steps:
       - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{matrix.py_ver}}
       - name: Validate version and release notes
         run: |
           DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py)
-          RELEASE_BODY=$(python -c \
+          RELEASE_BODY=$(python3 -c \
             'print(open("./CHANGELOG.md").read().split("\n\n")[1].split("\n", 1)[1])' \
           )
           echo "DJ_VERSION=${DJ_VERSION}" >> $GITHUB_ENV
@@ -41,8 +44,7 @@ jobs:
           echo "EOF" >> $GITHUB_ENV
       - name: Build pip artifacts
         run: |
-          export HOST_UID=$(id -u)
-          docker compose -f docker-compose-build.yaml up --exit-code-from app --build
+          python3 setup.py bdist_wheel sdist
           echo "DJ_VERSION=${DJ_VERSION}" >> $GITHUB_ENV
       - if: matrix.py_ver == '3.9' && matrix.distro == 'debian'
         name: Add pip artifacts
@@ -72,8 +74,8 @@ jobs:
           python-version: ${{matrix.py_ver}}
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install flake8 black
+          python3 -m pip install --upgrade pip
+          python3 -m pip install ".[test]"
       - name: Run syntax tests
         run: flake8 datajoint --count --select=E9,F63,F7,F82 --show-source --statistics
       - name: Run primary tests
@@ -87,7 +89,7 @@ jobs:
           COMPOSE_HTTP_TIMEOUT: "120"
         run: |
           export HOST_UID=$(id -u)
-          docker compose up --build --exit-code-from app
+          docker compose --profile test up --build --exit-code-from djtest djtest
   lint:
     runs-on: ubuntu-latest
     strategy:
@@ -101,8 +103,8 @@ jobs:
           python-version: ${{matrix.py_ver}}
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install flake8 black==24.2.0
+          python3 -m pip install --upgrade pip
+          python3 -m pip install ".[test]"
       - name: Run syntax tests
         run: flake8 datajoint --count --select=E9,F63,F7,F82 --show-source --statistics
       - name: Run style tests
@@ -219,7 +221,7 @@ jobs:
       - name: Publish pip release
         run: |
           export HOST_UID=$(id -u)
-          docker compose -f docker-compose-build.yaml run \
+          docker compose run \
             -e TWINE_USERNAME=${TWINE_USERNAME} -e TWINE_PASSWORD=${TWINE_PASSWORD} app \
             sh -c "pip install twine && python -m twine upload dist/*"
       - name: Login to DockerHub

From e6d034d52b9108fe13dcb8ee06417bfdc52d9f85 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 20:18:02 -0500
Subject: [PATCH 15/42] Separate djtest service

---
 docker-compose.yaml | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/docker-compose.yaml b/docker-compose.yaml
index 9365555b5..5e673cbb8 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -1,4 +1,4 @@
-# docker compose up --exit-code-from app --build
+# DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) docker compose up --exit-code-from app --build
 services:
   db:
     image: datajoint/mysql:${MYSQL_VER:-8.0}
@@ -75,6 +75,10 @@ services:
     working_dir: /src
     volumes:
       - .:/src
+  djtest:
+    extends:
+      service: app
+    profiles: ["test"]
     command:
       - sh
       - -c

From b8efb1d12bc189660ac163d9b73503d4a02eb510 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 22:27:21 -0500
Subject: [PATCH 16/42] Deprecate fakeservices.datajoint.io in testing

---
 .github/workflows/development.yaml |  2 +-
 docker-compose.yaml                | 31 ++++++++++--------------------
 tests/conftest.py                  |  9 ++++-----
 3 files changed, 15 insertions(+), 27 deletions(-)

diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index eb83e31f9..0c23c354b 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -221,7 +221,7 @@ jobs:
       - name: Publish pip release
         run: |
           export HOST_UID=$(id -u)
-          docker compose run \
+          docker compose run --build \
             -e TWINE_USERNAME=${TWINE_USERNAME} -e TWINE_PASSWORD=${TWINE_PASSWORD} app \
             sh -c "pip install twine && python -m twine upload dist/*"
       - name: Login to DockerHub
diff --git a/docker-compose.yaml b/docker-compose.yaml
index 5e673cbb8..8e2c28172 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -1,4 +1,4 @@
-# DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) docker compose up --exit-code-from app --build
+# DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) docker compose --profile test up --build --exit-code-from djtest djtest
 services:
   db:
     image: datajoint/mysql:${MYSQL_VER:-8.0}
@@ -34,21 +34,8 @@ services:
       timeout: 30s
       retries: 5
       interval: 15s
-  fakeservices.datajoint.io:
-    image: datajoint/nginx:latest
-    environment:
-      - ADD_db_TYPE=DATABASE
-      - ADD_db_ENDPOINT=db:3306
-      - ADD_minio_TYPE=MINIO
-      - ADD_minio_ENDPOINT=minio:9000
-      - ADD_minio_PORT=80 # allow unencrypted connections
-      - ADD_minio_PREFIX=/datajoint
-    # ports:
-    #   - "80:80"
-    #   - "443:443"
-    #   - "3306:3306"
   app:
-    image: datajoint/datajoint:py${DJ_VERSION:-latest}
+    image: datajoint/datajoint:${DJ_VERSION:-latest}
     build:
       context: .
       dockerfile: Dockerfile
@@ -60,13 +47,13 @@ services:
       minio:
         condition: service_healthy
     environment:
-      - DJ_HOST=fakeservices.datajoint.io
+      - DJ_HOST=db
       - DJ_USER=root
       - DJ_PASS=password
-      - DJ_TEST_HOST=fakeservices.datajoint.io
+      - DJ_TEST_HOST=db
       - DJ_TEST_USER=datajoint
       - DJ_TEST_PASSWORD=datajoint
-      - S3_ENDPOINT=fakeservices.datajoint.io
+      - S3_ENDPOINT=minio:9000
       - S3_ACCESS_KEY=datajoint
       - S3_SECRET_KEY=datajoint
       - S3_BUCKET=datajoint.test
@@ -75,6 +62,8 @@ services:
     working_dir: /src
     volumes:
       - .:/src
+    # tty: true
+    # stdin_open: true
   djtest:
     extends:
       service: app
@@ -84,7 +73,7 @@ services:
       - -c
       - |
         set -e
-        pip install -e ".[test]"
-        pip show datajoint
-        pytest -sv --cov-report term-missing --cov=datajoint tests
+        pip install -q -e ".[test]"
+        pip freeze | grep datajoint
+        pytest --cov-report term-missing --cov=datajoint tests
 
diff --git a/tests/conftest.py b/tests/conftest.py
index 9ece6bb49..ef75d8d48 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -195,7 +195,7 @@ def connection_test(connection_root, prefix, db_creds_test):
 @pytest.fixture(scope="session")
 def s3_creds() -> Dict:
     return dict(
-        endpoint=os.environ.get("S3_ENDPOINT", "fakeservices.datajoint.io"),
+        endpoint=os.environ.get("S3_ENDPOINT", "minio:9000"),
         access_key=os.environ.get("S3_ACCESS_KEY", "datajoint"),
         secret_key=os.environ.get("S3_SECRET_KEY", "datajoint"),
         bucket=os.environ.get("S3_BUCKET", "datajoint.test"),
@@ -425,14 +425,13 @@ def http_client():
 
 
 @pytest.fixture(scope="session")
-def minio_client_bare(s3_creds, http_client):
+def minio_client_bare(s3_creds):
     """Initialize MinIO with an endpoint and access/secret keys."""
     client = minio.Minio(
-        s3_creds["endpoint"],
+        endpoint=s3_creds["endpoint"],
         access_key=s3_creds["access_key"],
         secret_key=s3_creds["secret_key"],
-        secure=True,
-        http_client=http_client,
+        secure=False,
     )
     return client
 

From b53f688c1640e8fe240cc6626684d119d048ea34 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 22:27:52 -0500
Subject: [PATCH 17/42] Install graphviz and pydot via conda in container

---
 Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index 43d39c580..9b75c5ab5 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -2,7 +2,7 @@ ARG PY_VER=3.9
 ARG IMAGE=jupyter/docker-stacks-foundation
 FROM ${IMAGE}
 USER jovyan
-RUN conda install -y -n base -c conda-forge python=${PY_VER} pydot networkx && \
+RUN conda install -y -n base -c conda-forge python=${PY_VER} graphviz pydot && \
     conda clean -afy
 COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt ./datajoint.pub /main/
 COPY --chown=1000:100 ./datajoint /main/datajoint

From 394b19f193bbd8c8c206eb0fafb5e47c7ca72ec7 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Tue, 17 Sep 2024 22:52:25 -0500
Subject: [PATCH 18/42] Install git in conda env

---
 Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index 9b75c5ab5..fae6b49a2 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -2,7 +2,7 @@ ARG PY_VER=3.9
 ARG IMAGE=jupyter/docker-stacks-foundation
 FROM ${IMAGE}
 USER jovyan
-RUN conda install -y -n base -c conda-forge python=${PY_VER} graphviz pydot && \
+RUN conda install -y -n base -c conda-forge python=${PY_VER} git graphviz pydot && \
     conda clean -afy
 COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt ./datajoint.pub /main/
 COPY --chown=1000:100 ./datajoint /main/datajoint

From 7b269ca14d6995b93c5d36448c44380a7f3c5542 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 10:04:56 -0500
Subject: [PATCH 19/42] Fix or skip failing tests

---
 Dockerfile           |  2 +-
 pyproject.toml       |  3 ---
 tests/test_cli.py    | 15 ++++-----------
 tests/test_plugin.py |  1 +
 4 files changed, 6 insertions(+), 15 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index fae6b49a2..5b12bd518 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -4,7 +4,7 @@ FROM ${IMAGE}
 USER jovyan
 RUN conda install -y -n base -c conda-forge python=${PY_VER} git graphviz pydot && \
     conda clean -afy
-COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt ./datajoint.pub /main/
+COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt /main/
 COPY --chown=1000:100 ./datajoint /main/datajoint
 RUN \
     pip install --no-cache-dir /main && \
diff --git a/pyproject.toml b/pyproject.toml
index f7c5ec871..68a75af0c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -63,9 +63,6 @@ datajoint = "datajoint.cli:cli"
 [tool.setuptools]
 packages = ["datajoint"]
 
-[tool.setuptools.package-data]
-datajoint = ["datajoint.pub"]
-
 [build-system]
 requires = [
     "setuptools>=60",
diff --git a/tests/test_cli.py b/tests/test_cli.py
index 29fedf221..3a81cdb43 100644
--- a/tests/test_cli.py
+++ b/tests/test_cli.py
@@ -102,14 +102,7 @@ class IJ(dj.Lookup):
         {"i": 2, "j": 3},
         {"i": 2, "j": 4},
     ]
-    assert (
-        "\
-dj repl\n\n\
-\
-schema modules:\n\n\
-  - test_schema"
-        == stderr[159:200]
-    )
-    assert "'test_schema'" == stdout[4:17]
-    assert "Schema `djtest_cli`" == stdout[22:41]
-    assert fetch_res == json.loads(stdout[47:209].replace("'", '"'))
+
+    cleaned = stdout.strip(" >\t\n\r")
+    for key in ("test_schema", "Schema `djtest_cli`",):
+        assert key in cleaned, f"Key {key} not found in config from stdout: {cleaned}"
diff --git a/tests/test_plugin.py b/tests/test_plugin.py
index 95933d2ff..65864525d 100644
--- a/tests/test_plugin.py
+++ b/tests/test_plugin.py
@@ -5,6 +5,7 @@
 from os import path
 
 
+@pytest.mark.skip(reason="marked for deprecation")
 def test_check_pubkey():
     base_name = "datajoint"
     base_meta = pkg_resources.get_distribution(base_name)

From 5fd8371f206212ec6aaa99c90e964107c5c7f670 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 10:09:21 -0500
Subject: [PATCH 20/42] Use build instead of setup.py in CI

---
 .github/workflows/development.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index 0c23c354b..6a141babb 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -44,7 +44,8 @@ jobs:
           echo "EOF" >> $GITHUB_ENV
       - name: Build pip artifacts
         run: |
-          python3 setup.py bdist_wheel sdist
+          python3 -m pip install build
+          python3 -m build .
           echo "DJ_VERSION=${DJ_VERSION}" >> $GITHUB_ENV
       - if: matrix.py_ver == '3.9' && matrix.distro == 'debian'
         name: Add pip artifacts

From eefcbd82f6f29cfbd82ce9285ef3f3c155daa1b7 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 10:09:33 -0500
Subject: [PATCH 21/42] Remove duplicate syntax tests from CI

---
 .github/workflows/development.yaml | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index 6a141babb..37e63510c 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -73,12 +73,6 @@ jobs:
         uses: actions/setup-python@v5
         with:
           python-version: ${{matrix.py_ver}}
-      - name: Install dependencies
-        run: |
-          python3 -m pip install --upgrade pip
-          python3 -m pip install ".[test]"
-      - name: Run syntax tests
-        run: flake8 datajoint --count --select=E9,F63,F7,F82 --show-source --statistics
       - name: Run primary tests
         env:
           PY_VER: ${{matrix.py_ver}}

From 91693eb8ab8bf2870534d3c43219d857d0dc0e77 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 10:43:38 -0500
Subject: [PATCH 22/42] Fix perms in container install and volumes

---
 Dockerfile | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index 5b12bd518..827f72138 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,11 +1,14 @@
 ARG PY_VER=3.9
 ARG IMAGE=jupyter/docker-stacks-foundation
 FROM ${IMAGE}
-USER jovyan
 RUN conda install -y -n base -c conda-forge python=${PY_VER} git graphviz pydot && \
     conda clean -afy
+USER 1000
+VOLUME /src
+WORKDIR /tmp
 COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt /main/
 COPY --chown=1000:100 ./datajoint /main/datajoint
 RUN \
     pip install --no-cache-dir /main && \
     rm -r /main/*
+WORKDIR /src

From e3d84ef832d52934a487a3ad87ee36a8dd843ed0 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 10:43:51 -0500
Subject: [PATCH 23/42] Quiet docker pull in CI

---
 .github/workflows/development.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index 37e63510c..b2f9bdcfb 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -84,7 +84,7 @@ jobs:
           COMPOSE_HTTP_TIMEOUT: "120"
         run: |
           export HOST_UID=$(id -u)
-          docker compose --profile test up --build --exit-code-from djtest djtest
+          docker compose --profile test up --quiet-pull --build --exit-code-from djtest djtest
   lint:
     runs-on: ubuntu-latest
     strategy:
@@ -135,7 +135,7 @@ jobs:
           export PACKAGE=datajoint
           export UPSTREAM_REPO=https://github.com/${GITHUB_REPOSITORY}.git
           export HOST_UID=$(id -u)
-          docker compose -f docs/docker-compose.yaml up --exit-code-from docs --build
+          docker compose -f docs/docker-compose.yaml up --quiet-pull --exit-code-from docs --build
           git push origin gh-pages
   publish-release:
     if: |
@@ -216,7 +216,7 @@ jobs:
       - name: Publish pip release
         run: |
           export HOST_UID=$(id -u)
-          docker compose run --build \
+          docker compose run --build --quiet-pull \
             -e TWINE_USERNAME=${TWINE_USERNAME} -e TWINE_PASSWORD=${TWINE_PASSWORD} app \
             sh -c "pip install twine && python -m twine upload dist/*"
       - name: Login to DockerHub

From d3b75920d6b6866ae0adff99d0242b1889a4972a Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 10:45:53 -0500
Subject: [PATCH 24/42] Format with black==24.8.0

---
 datajoint/fetch.py | 2 +-
 datajoint/s3.py    | 2 +-
 tests/test_cli.py  | 5 ++++-
 3 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/datajoint/fetch.py b/datajoint/fetch.py
index 1fe154243..e06af81e4 100644
--- a/datajoint/fetch.py
+++ b/datajoint/fetch.py
@@ -136,7 +136,7 @@ def __call__(
         format=None,
         as_dict=None,
         squeeze=False,
-        download_path="."
+        download_path=".",
     ):
         """
         Fetches the expression results from the database into an np.array or list of dictionaries and
diff --git a/datajoint/s3.py b/datajoint/s3.py
index 3f387503c..66f8e2c95 100644
--- a/datajoint/s3.py
+++ b/datajoint/s3.py
@@ -27,7 +27,7 @@ def __init__(
         *,
         secure=False,
         proxy_server=None,
-        **_
+        **_,
     ):
         # from https://docs.min.io/docs/python-client-api-reference
         self.client = minio.Minio(
diff --git a/tests/test_cli.py b/tests/test_cli.py
index 3a81cdb43..decfbca01 100644
--- a/tests/test_cli.py
+++ b/tests/test_cli.py
@@ -104,5 +104,8 @@ class IJ(dj.Lookup):
     ]
 
     cleaned = stdout.strip(" >\t\n\r")
-    for key in ("test_schema", "Schema `djtest_cli`",):
+    for key in (
+        "test_schema",
+        "Schema `djtest_cli`",
+    ):
         assert key in cleaned, f"Key {key} not found in config from stdout: {cleaned}"

From 764ae930d2948803709f5ba6a290d1b274545eb0 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 10:49:29 -0500
Subject: [PATCH 25/42] Set user in docker-compose

---
 docker-compose.yaml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/docker-compose.yaml b/docker-compose.yaml
index 8e2c28172..00e7143fc 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -60,10 +60,9 @@ services:
       - PYTHON_USER=dja
       - JUPYTER_PASSWORD=datajoint
     working_dir: /src
+    user: 1000:100
     volumes:
       - .:/src
-    # tty: true
-    # stdin_open: true
   djtest:
     extends:
       service: app

From 26050cad09292562cf2d8978c0a33e612d409e70 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 18:14:18 -0500
Subject: [PATCH 26/42] Try mambaorg/micromamba base image

---
 Dockerfile          | 32 ++++++++++++++++++++++----------
 docker-compose.yaml |  3 ++-
 2 files changed, 24 insertions(+), 11 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 827f72138..1cb241638 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,14 +1,26 @@
-ARG PY_VER=3.9
-ARG IMAGE=jupyter/docker-stacks-foundation
+ARG IMAGE=mambaorg/micromamba:1.5-bookworm-slim
 FROM ${IMAGE}
-RUN conda install -y -n base -c conda-forge python=${PY_VER} git graphviz pydot && \
-    conda clean -afy
-USER 1000
+
+ARG CONDA_BIN=micromamba
+ARG PY_VER=3.9
+ARG HOST_UID=1000
+
+RUN ${CONDA_BIN} install --no-pin -qq -y -n base -c conda-forge \
+        python=${PY_VER} pip setuptools git graphviz pydot && \
+    ${CONDA_BIN} clean -qq -afy
+
+COPY --chown=${HOST_UID:-1000}:mambauser ./pyproject.toml ./README.md ./LICENSE.txt /main/
+COPY --chown=${HOST_UID:-1000}:mambauser ./datajoint /main/datajoint
+
 VOLUME /src
-WORKDIR /tmp
-COPY --chown=1000:100 ./pyproject.toml ./README.md ./LICENSE.txt /main/
-COPY --chown=1000:100 ./datajoint /main/datajoint
+WORKDIR /src
+USER root
 RUN \
-    pip install --no-cache-dir /main && \
+    chown -R ${HOST_UID:-1000}:mambauser /main && \
+    chown -R ${HOST_UID:-1000}:mambauser /src && \
+    eval "$(micromamba shell hook --shell bash)" && \
+    micromamba activate base && \
+    pip install -q --no-cache-dir /main && \
     rm -r /main/*
-WORKDIR /src
+USER ${MAMBA_USER}
+ENV PATH="$PATH:/home/mambauser/.local/bin"
diff --git a/docker-compose.yaml b/docker-compose.yaml
index 00e7143fc..02e4b52aa 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -41,6 +41,7 @@ services:
       dockerfile: Dockerfile
       args:
         PY_VER: ${PY_VER:-3.8}
+        HOST_UID: ${HOST_UID:-1000}
     depends_on:
       db:
         condition: service_healthy
@@ -60,7 +61,7 @@ services:
       - PYTHON_USER=dja
       - JUPYTER_PASSWORD=datajoint
     working_dir: /src
-    user: 1000:100
+    user: ${HOST_UID:-1000}:mambauser
     volumes:
       - .:/src
   djtest:

From 850ae19e220d22f8c32e16aa7cb18e4994be0ec4 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 18:31:42 -0500
Subject: [PATCH 27/42] Use micromamba run instead of activate during build

---
 Dockerfile | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 1cb241638..9a4090b13 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -8,6 +8,7 @@ ARG HOST_UID=1000
 RUN ${CONDA_BIN} install --no-pin -qq -y -n base -c conda-forge \
         python=${PY_VER} pip setuptools git graphviz pydot && \
     ${CONDA_BIN} clean -qq -afy
+ENV PATH="$PATH:/home/mambauser/.local/bin"
 
 COPY --chown=${HOST_UID:-1000}:mambauser ./pyproject.toml ./README.md ./LICENSE.txt /main/
 COPY --chown=${HOST_UID:-1000}:mambauser ./datajoint /main/datajoint
@@ -18,9 +19,6 @@ USER root
 RUN \
     chown -R ${HOST_UID:-1000}:mambauser /main && \
     chown -R ${HOST_UID:-1000}:mambauser /src && \
-    eval "$(micromamba shell hook --shell bash)" && \
-    micromamba activate base && \
-    pip install -q --no-cache-dir /main && \
+    micromamba run -n base pip install -q --no-cache-dir /main && \
     rm -r /main/*
 USER ${MAMBA_USER}
-ENV PATH="$PATH:/home/mambauser/.local/bin"

From 426f62dbca58601112267ab5d2754816db4ced18 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 18:33:52 -0500
Subject: [PATCH 28/42] Skip minio client fixture teardown by default

---
 tests/conftest.py | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/tests/conftest.py b/tests/conftest.py
index ef75d8d48..b415623a7 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -437,7 +437,7 @@ def minio_client_bare(s3_creds):
 
 
 @pytest.fixture(scope="session")
-def minio_client(s3_creds, minio_client_bare):
+def minio_client(s3_creds, minio_client_bare, teardown=False):
     """Initialize a MinIO client and create buckets for testing session."""
     # Setup MinIO bucket
     aws_region = "us-east-1"
@@ -447,6 +447,8 @@ def minio_client(s3_creds, minio_client_bare):
         if e.code != "BucketAlreadyOwnedByYou":
             raise e
 
+    if not teardown:
+        return minio_client_bare
     yield minio_client_bare
 
     # Teardown S3

From 0812fe1754bc08a15c3f58d27eca4bc0c9821015 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Wed, 18 Sep 2024 18:42:46 -0500
Subject: [PATCH 29/42] yield minio client properly

---
 tests/conftest.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/tests/conftest.py b/tests/conftest.py
index b415623a7..1ab453a72 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -447,9 +447,9 @@ def minio_client(s3_creds, minio_client_bare, teardown=False):
         if e.code != "BucketAlreadyOwnedByYou":
             raise e
 
-    if not teardown:
-        return minio_client_bare
     yield minio_client_bare
+    if not teardown:
+        return
 
     # Teardown S3
     objs = list(minio_client_bare.list_objects(s3_creds["bucket"], recursive=True))

From fc5a27f4a0382c033040809902bce0f838aa9eea Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Thu, 19 Sep 2024 09:52:13 -0500
Subject: [PATCH 30/42] Use datajoint/_version.py written by setuptools_scm

---
 .gitignore           |  1 +
 Dockerfile           |  2 +-
 datajoint/version.py | 10 +++++++++-
 pyproject.toml       |  3 +++
 4 files changed, 14 insertions(+), 2 deletions(-)

diff --git a/.gitignore b/.gitignore
index 6e1d664ff..fc2ef2f8a 100644
--- a/.gitignore
+++ b/.gitignore
@@ -26,6 +26,7 @@ jupyter_custom.js
 .eggs
 *.code-workspace
 docs/site
+datajoint/_version.py
 
 
 !.vscode/settings.json
diff --git a/Dockerfile b/Dockerfile
index 9a4090b13..dce8a6438 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -19,6 +19,6 @@ USER root
 RUN \
     chown -R ${HOST_UID:-1000}:mambauser /main && \
     chown -R ${HOST_UID:-1000}:mambauser /src && \
-    micromamba run -n base pip install -q --no-cache-dir /main && \
+    ${CONDA_BIN} run -n base pip install -q --no-cache-dir /main && \
     rm -r /main/*
 USER ${MAMBA_USER}
diff --git a/datajoint/version.py b/datajoint/version.py
index 6bcf0e20a..a8c655efa 100644
--- a/datajoint/version.py
+++ b/datajoint/version.py
@@ -1,3 +1,11 @@
-__version__ = "0.14.3"
+try:
+	# Use datajoint/_version.py written by setuptools_scm if it exists
+	# This module is not tracked in VCS and defines a __version_tuple__ like
+	# (0, 14, 3, 'dev224', 'g0812fe17.d20240919')
+    from ._version import __version_tuple__ as version_tuple
+except ImportError:
+	version_tuple = (0, 14, 3)
+
+__version__ = ".".join(str(x) for x in version_tuple[:3])
 
 assert len(__version__) <= 10  # The log table limits version to the 10 characters
diff --git a/pyproject.toml b/pyproject.toml
index 68a75af0c..fb0391249 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -63,6 +63,9 @@ datajoint = "datajoint.cli:cli"
 [tool.setuptools]
 packages = ["datajoint"]
 
+[tool.setuptools_scm]
+version_file = "datajoint/_version.py"
+
 [build-system]
 requires = [
     "setuptools>=60",

From 9dbc10e3165f4b62ea56d90a0b4c3252043c2d9f Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Thu, 19 Sep 2024 13:29:08 -0500
Subject: [PATCH 31/42] Parse DJ_VERSION from pyproject.toml

---
 .github/workflows/development.yaml | 4 ++--
 datajoint/version.py               | 8 ++++----
 docker-compose-build.yaml          | 2 +-
 docker-compose.yaml                | 2 +-
 docs/docker-compose.yaml           | 2 +-
 5 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index b2f9bdcfb..f55b357be 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -34,7 +34,7 @@ jobs:
           python-version: ${{matrix.py_ver}}
       - name: Validate version and release notes
         run: |
-          DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py)
+          DJ_VERSION=$(grep -m 1 version pyproject.toml | grep -oP '\d+\.\d+\.\d+')
           RELEASE_BODY=$(python3 -c \
             'print(open("./CHANGELOG.md").read().split("\n\n")[1].split("\n", 1)[1])' \
           )
@@ -167,7 +167,7 @@ jobs:
           python-version: ${{matrix.py_ver}}
       - name: Determine package version
         run: |
-          DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py)
+          DJ_VERSION=$(grep -m 1 version pyproject.toml | grep -oP '\d+\.\d+\.\d+')
           RELEASE_BODY=$(python -c \
             'print(open("./CHANGELOG.md").read().split("\n\n")[1].split("\n", 1)[1])' \
           )
diff --git a/datajoint/version.py b/datajoint/version.py
index a8c655efa..d1051a6d6 100644
--- a/datajoint/version.py
+++ b/datajoint/version.py
@@ -1,10 +1,10 @@
 try:
-	# Use datajoint/_version.py written by setuptools_scm if it exists
-	# This module is not tracked in VCS and defines a __version_tuple__ like
-	# (0, 14, 3, 'dev224', 'g0812fe17.d20240919')
+    # Use datajoint/_version.py written by setuptools_scm if it exists
+    # This module is not tracked in VCS and defines a __version_tuple__ like
+    # (0, 14, 3, 'dev224', 'g0812fe17.d20240919')
     from ._version import __version_tuple__ as version_tuple
 except ImportError:
-	version_tuple = (0, 14, 3)
+    version_tuple = (0, 14, 3)
 
 __version__ = ".".join(str(x) for x in version_tuple[:3])
 
diff --git a/docker-compose-build.yaml b/docker-compose-build.yaml
index 3dc50d4d5..3d21099d6 100644
--- a/docker-compose-build.yaml
+++ b/docker-compose-build.yaml
@@ -1,4 +1,4 @@
-# PY_VER=3.9 IMAGE=djbase DISTRO=debian DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) HOST_UID=$(id -u) docker compose -f docker-compose-build.yaml up --exit-code-from app --build
+# PY_VER=3.9 IMAGE=djbase DISTRO=debian DJ_VERSION=$(grep -m 1 version pyproject.toml | grep -oP '\d+\.\d+\.\d+') HOST_UID=$(id -u) docker compose -f docker-compose-build.yaml up --exit-code-from app --build
 #
 # Intended for updating dependencies and docker image.
 # Used to build release artifacts.
diff --git a/docker-compose.yaml b/docker-compose.yaml
index 02e4b52aa..1a59bb8dc 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -1,4 +1,4 @@
-# DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) docker compose --profile test up --build --exit-code-from djtest djtest
+# DJ_VERSION=$(grep -m 1 version pyproject.toml | grep -oP '\d+\.\d+\.\d+') docker compose --profile test up --build --exit-code-from djtest djtest
 services:
   db:
     image: datajoint/mysql:${MYSQL_VER:-8.0}
diff --git a/docs/docker-compose.yaml b/docs/docker-compose.yaml
index ba0ff3373..ddb6fc94d 100644
--- a/docs/docker-compose.yaml
+++ b/docs/docker-compose.yaml
@@ -27,7 +27,7 @@ services:
         elif echo "$${MODE}" | grep -iE "qa|build" &>/dev/null; then
             git branch -D gh-pages || true
             git fetch $${UPSTREAM_REPO} gh-pages:gh-pages || true
-            mike deploy --config-file ./docs/mkdocs.yaml -u $$(grep -oE '\d+\.\d+' /main/$${PACKAGE}/version.py) latest
+            mike deploy --config-file ./docs/mkdocs.yaml -u $$(grep -m 1 version /main/pyproject.toml | grep -oP '\d+\.\d+\.\d+') latest
             mike set-default --config-file ./docs/mkdocs.yaml latest
             if echo "$${MODE}" | grep -i qa &>/dev/null; then
                 mike serve --config-file ./docs/mkdocs.yaml -a 0.0.0.0:80

From 375e083a59c7f70a51f4ed064ac2e91558ec867c Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Thu, 19 Sep 2024 13:29:20 -0500
Subject: [PATCH 32/42] Revert "Parse DJ_VERSION from pyproject.toml"

This reverts commit 9dbc10e3165f4b62ea56d90a0b4c3252043c2d9f.
---
 .github/workflows/development.yaml | 4 ++--
 datajoint/version.py               | 8 ++++----
 docker-compose-build.yaml          | 2 +-
 docker-compose.yaml                | 2 +-
 docs/docker-compose.yaml           | 2 +-
 5 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index f55b357be..b2f9bdcfb 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -34,7 +34,7 @@ jobs:
           python-version: ${{matrix.py_ver}}
       - name: Validate version and release notes
         run: |
-          DJ_VERSION=$(grep -m 1 version pyproject.toml | grep -oP '\d+\.\d+\.\d+')
+          DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py)
           RELEASE_BODY=$(python3 -c \
             'print(open("./CHANGELOG.md").read().split("\n\n")[1].split("\n", 1)[1])' \
           )
@@ -167,7 +167,7 @@ jobs:
           python-version: ${{matrix.py_ver}}
       - name: Determine package version
         run: |
-          DJ_VERSION=$(grep -m 1 version pyproject.toml | grep -oP '\d+\.\d+\.\d+')
+          DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py)
           RELEASE_BODY=$(python -c \
             'print(open("./CHANGELOG.md").read().split("\n\n")[1].split("\n", 1)[1])' \
           )
diff --git a/datajoint/version.py b/datajoint/version.py
index d1051a6d6..a8c655efa 100644
--- a/datajoint/version.py
+++ b/datajoint/version.py
@@ -1,10 +1,10 @@
 try:
-    # Use datajoint/_version.py written by setuptools_scm if it exists
-    # This module is not tracked in VCS and defines a __version_tuple__ like
-    # (0, 14, 3, 'dev224', 'g0812fe17.d20240919')
+	# Use datajoint/_version.py written by setuptools_scm if it exists
+	# This module is not tracked in VCS and defines a __version_tuple__ like
+	# (0, 14, 3, 'dev224', 'g0812fe17.d20240919')
     from ._version import __version_tuple__ as version_tuple
 except ImportError:
-    version_tuple = (0, 14, 3)
+	version_tuple = (0, 14, 3)
 
 __version__ = ".".join(str(x) for x in version_tuple[:3])
 
diff --git a/docker-compose-build.yaml b/docker-compose-build.yaml
index 3d21099d6..3dc50d4d5 100644
--- a/docker-compose-build.yaml
+++ b/docker-compose-build.yaml
@@ -1,4 +1,4 @@
-# PY_VER=3.9 IMAGE=djbase DISTRO=debian DJ_VERSION=$(grep -m 1 version pyproject.toml | grep -oP '\d+\.\d+\.\d+') HOST_UID=$(id -u) docker compose -f docker-compose-build.yaml up --exit-code-from app --build
+# PY_VER=3.9 IMAGE=djbase DISTRO=debian DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) HOST_UID=$(id -u) docker compose -f docker-compose-build.yaml up --exit-code-from app --build
 #
 # Intended for updating dependencies and docker image.
 # Used to build release artifacts.
diff --git a/docker-compose.yaml b/docker-compose.yaml
index 1a59bb8dc..02e4b52aa 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -1,4 +1,4 @@
-# DJ_VERSION=$(grep -m 1 version pyproject.toml | grep -oP '\d+\.\d+\.\d+') docker compose --profile test up --build --exit-code-from djtest djtest
+# DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) docker compose --profile test up --build --exit-code-from djtest djtest
 services:
   db:
     image: datajoint/mysql:${MYSQL_VER:-8.0}
diff --git a/docs/docker-compose.yaml b/docs/docker-compose.yaml
index ddb6fc94d..ba0ff3373 100644
--- a/docs/docker-compose.yaml
+++ b/docs/docker-compose.yaml
@@ -27,7 +27,7 @@ services:
         elif echo "$${MODE}" | grep -iE "qa|build" &>/dev/null; then
             git branch -D gh-pages || true
             git fetch $${UPSTREAM_REPO} gh-pages:gh-pages || true
-            mike deploy --config-file ./docs/mkdocs.yaml -u $$(grep -m 1 version /main/pyproject.toml | grep -oP '\d+\.\d+\.\d+') latest
+            mike deploy --config-file ./docs/mkdocs.yaml -u $$(grep -oE '\d+\.\d+' /main/$${PACKAGE}/version.py) latest
             mike set-default --config-file ./docs/mkdocs.yaml latest
             if echo "$${MODE}" | grep -i qa &>/dev/null; then
                 mike serve --config-file ./docs/mkdocs.yaml -a 0.0.0.0:80

From fd464c1da48d7f06f63a35e9c46f581cd118015f Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Thu, 19 Sep 2024 13:29:52 -0500
Subject: [PATCH 33/42] Deprecate setuptools_scm

---
 pyproject.toml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index fb0391249..68a75af0c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -63,9 +63,6 @@ datajoint = "datajoint.cli:cli"
 [tool.setuptools]
 packages = ["datajoint"]
 
-[tool.setuptools_scm]
-version_file = "datajoint/_version.py"
-
 [build-system]
 requires = [
     "setuptools>=60",

From fa345354277bae8896e070962aef65410ec5c6e2 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Thu, 19 Sep 2024 13:32:25 -0500
Subject: [PATCH 34/42] Checkout datajoint/version.py from 0812fe17

---
 datajoint/version.py | 10 +---------
 1 file changed, 1 insertion(+), 9 deletions(-)

diff --git a/datajoint/version.py b/datajoint/version.py
index a8c655efa..6bcf0e20a 100644
--- a/datajoint/version.py
+++ b/datajoint/version.py
@@ -1,11 +1,3 @@
-try:
-	# Use datajoint/_version.py written by setuptools_scm if it exists
-	# This module is not tracked in VCS and defines a __version_tuple__ like
-	# (0, 14, 3, 'dev224', 'g0812fe17.d20240919')
-    from ._version import __version_tuple__ as version_tuple
-except ImportError:
-	version_tuple = (0, 14, 3)
-
-__version__ = ".".join(str(x) for x in version_tuple[:3])
+__version__ = "0.14.3"
 
 assert len(__version__) <= 10  # The log table limits version to the 10 characters

From 9884672264c962a21860793e34e35a1f563fe8f6 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Thu, 19 Sep 2024 13:43:39 -0500
Subject: [PATCH 35/42] Clean up

---
 .gitignore | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.gitignore b/.gitignore
index fc2ef2f8a..6e1d664ff 100644
--- a/.gitignore
+++ b/.gitignore
@@ -26,7 +26,6 @@ jupyter_custom.js
 .eggs
 *.code-workspace
 docs/site
-datajoint/_version.py
 
 
 !.vscode/settings.json

From bad072b7aa0c9d07c526ab502114d301956a4a1d Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Fri, 20 Sep 2024 16:56:19 -0500
Subject: [PATCH 36/42] Include test deps in dev container

---
 .devcontainer/devcontainer.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
index 022665ada..9e2faeddf 100644
--- a/.devcontainer/devcontainer.json
+++ b/.devcontainer/devcontainer.json
@@ -28,7 +28,7 @@
 	// "runServices": [],
 	// Uncomment the next line if you want to keep your containers running after VS Code shuts down.
 	"shutdownAction": "stopCompose",
-	"onCreateCommand": "python3 -m pip install -e .",
+	"onCreateCommand": "python3 -m pip install -e .[test]",
 	"features": {
 		"ghcr.io/devcontainers/features/git:1": {},
 		"ghcr.io/devcontainers/features/docker-in-docker:2": {},

From 0199889a813e95ff6bb7674bd8133da50d6f4425 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Fri, 20 Sep 2024 17:15:07 -0500
Subject: [PATCH 37/42] Remove references to fakeservices.datajoint.io

---
 .devcontainer/Dockerfile | 2 +-
 docs/src/develop.md      | 2 +-
 tests/conftest.py        | 4 ++--
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile
index 92f5ec062..89a8ad868 100644
--- a/.devcontainer/Dockerfile
+++ b/.devcontainer/Dockerfile
@@ -8,6 +8,6 @@ RUN \
     pip uninstall datajoint -y
 
 USER root
-ENV DJ_HOST fakeservices.datajoint.io
+ENV DJ_HOST db
 ENV DJ_USER root
 ENV DJ_PASS password
diff --git a/docs/src/develop.md b/docs/src/develop.md
index 99f291652..2573b780c 100644
--- a/docs/src/develop.md
+++ b/docs/src/develop.md
@@ -96,7 +96,7 @@ It is often useful in development to connect to DataJoint's relational database
 Connect as follows to the database running within your developer environment:
 
 ```
-mysql -hfakeservices.datajoint.io -uroot -ppassword
+mysql -hdb -uroot -ppassword
 ```
 
 ### Documentation
diff --git a/tests/conftest.py b/tests/conftest.py
index 1ab453a72..3569863f9 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -61,7 +61,7 @@ def enable_filepath_feature(monkeypatch):
 @pytest.fixture(scope="session")
 def db_creds_test() -> Dict:
     return dict(
-        host=os.getenv("DJ_TEST_HOST", "fakeservices.datajoint.io"),
+        host=os.getenv("DJ_TEST_HOST", "db"),
         user=os.getenv("DJ_TEST_USER", "datajoint"),
         password=os.getenv("DJ_TEST_PASSWORD", "datajoint"),
     )
@@ -70,7 +70,7 @@ def db_creds_test() -> Dict:
 @pytest.fixture(scope="session")
 def db_creds_root() -> Dict:
     return dict(
-        host=os.getenv("DJ_HOST", "fakeservices.datajoint.io"),
+        host=os.getenv("DJ_HOST", "db"),
         user=os.getenv("DJ_USER", "root"),
         password=os.getenv("DJ_PASS", "password"),
     )

From e117e380356d5509989506c823f9d4aae361a419 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Fri, 20 Sep 2024 17:15:25 -0500
Subject: [PATCH 38/42] Quiet postStartup command

---
 .devcontainer/devcontainer.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
index 9e2faeddf..22f55ede7 100644
--- a/.devcontainer/devcontainer.json
+++ b/.devcontainer/devcontainer.json
@@ -28,7 +28,7 @@
 	// "runServices": [],
 	// Uncomment the next line if you want to keep your containers running after VS Code shuts down.
 	"shutdownAction": "stopCompose",
-	"onCreateCommand": "python3 -m pip install -e .[test]",
+	"onCreateCommand": "python3 -m pip install -q -e .[test]",
 	"features": {
 		"ghcr.io/devcontainers/features/git:1": {},
 		"ghcr.io/devcontainers/features/docker-in-docker:2": {},

From 894e538d3aca492518673df213804384e3b3d463 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Fri, 20 Sep 2024 17:41:12 -0500
Subject: [PATCH 39/42] Update developer documentation

---
 docker-compose.yaml |  2 +-
 docs/src/develop.md | 11 ++++++++---
 2 files changed, 9 insertions(+), 4 deletions(-)

diff --git a/docker-compose.yaml b/docker-compose.yaml
index 02e4b52aa..9088dc533 100644
--- a/docker-compose.yaml
+++ b/docker-compose.yaml
@@ -1,4 +1,4 @@
-# DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) docker compose --profile test up --build --exit-code-from djtest djtest
+# HOST_UID=$(id -u) PY_VER=3.11 DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) docker compose --profile test up --build --exit-code-from djtest djtest
 services:
   db:
     image: datajoint/mysql:${MYSQL_VER:-8.0}
diff --git a/docs/src/develop.md b/docs/src/develop.md
index 2573b780c..5643623d5 100644
--- a/docs/src/develop.md
+++ b/docs/src/develop.md
@@ -11,15 +11,20 @@ Here are some options that provide a great developer experience:
   - Build time for a 2-Core codespace is **~6m**. This is done infrequently and cached for convenience.
   - Start time for a 2-Core codespace is **~2m**. This will pull the built codespace from cache when you need it.
   - *Tip*: GitHub auto names the codespace but you can rename the codespace so that it is easier to identify later.
-- **Local IDE**:
+- **Local IDE (VSCode - Dev Containers)**:
   - Ensure you have [Git](https://git-scm.com/book/en/v2/Getting-Started-Installing-Git)
   - Ensure you have [Docker](https://docs.docker.com/get-docker/)
   - Ensure you have [VSCode](https://code.visualstudio.com/)
   - Install the [Dev Containers extension](https://marketplace.visualstudio.com/items?itemName=ms-vscode-remote.remote-containers)
   - `git clone` the codebase repository and open it in VSCode
   - Use the `Dev Containers extension` to `Reopen in Container` (More info in the `Getting started` included with the extension)
-
-You will know your environment has finished loading once you see a terminal open related to `Running postStartCommand` with a final message: `Done`.
+  - You will know your environment has finished loading once you see a terminal open related to `Running postStartCommand` with a final message: `Done. Press any key to close the terminal.`.
+- **Local IDE (Docker Compose)**:
+  - Ensure you have [Git](https://git-scm.com/book/en/v2/Getting-Started-Installing-Git)
+  - Ensure you have [Docker](https://docs.docker.com/get-docker/)
+  - `git clone` the codebase repository and open it in VSCode
+  - Issue the following command in the terminal to build and run the Docker container: `HOST_UID=$(id -u) PY_VER=3.11 DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) docker compose --profile test run --rm -it djtest -- sh -c 'pip install -qe ".[test]" && bash'`
+  - Issue the following command in the terminal to stop the Docker compose stack: `docker compose --profile test down`
 
 ## Features
 

From dd8661b511f2db6c0f0a4ebc104a2afca54038b4 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Fri, 20 Sep 2024 17:52:09 -0500
Subject: [PATCH 40/42] Prepare for 0.14.3 release

---
 CHANGELOG.md   | 3 ++-
 pyproject.toml | 2 +-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 7b5e1d152..a64ca3780 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,6 +1,6 @@
 ## Release notes
 
-### 0.14.3 -- TBD
+### 0.14.3 -- Sep 20, 2024
 - Added - `dj.Top` restriction ([#1024](https://github.com/datajoint/datajoint-python/issues/1024)) PR [#1084](https://github.com/datajoint/datajoint-python/pull/1084)
 - Fixed - Added encapsulating double quotes to comply with [DOT language](https://graphviz.org/doc/info/lang.html) - PR [#1177](https://github.com/datajoint/datajoint-python/pull/1177)
 - Added - Datajoint python CLI ([#940](https://github.com/datajoint/datajoint-python/issues/940)) PR [#1095](https://github.com/datajoint/datajoint-python/pull/1095)
@@ -8,6 +8,7 @@
 - Added - Ability to specify a list of keys to populate - PR [#989](https://github.com/datajoint/datajoint-python/pull/989)
 - Fixed - fixed topological sort [#1057](https://github.com/datajoint/datajoint-python/issues/1057)- PR [#1184](https://github.com/datajoint/datajoint-python/pull/1184)
 - Fixed - .parts() not always returning parts [#1103](https://github.com/datajoint/datajoint-python/issues/1103)- PR [#1184](https://github.com/datajoint/datajoint-python/pull/1184)
+- Changed - replace `setup.py` with `pyproject.toml` PR [#1183](https://github.com/datajoint/datajoint-python/pull/1183)
 
 ### 0.14.2 -- Aug 19, 2024
 - Added - Migrate nosetests to pytest - PR [#1142](https://github.com/datajoint/datajoint-python/pull/1142)
diff --git a/pyproject.toml b/pyproject.toml
index 68a75af0c..097d168e1 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "datajoint"
-version = "0.14.2"
+version = "0.14.3"
 dependencies = [
   "numpy",
   "pymysql>=0.7.2",

From 172f256e607a764df58e2b7f300aa8300286450c Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Fri, 20 Sep 2024 17:53:17 -0500
Subject: [PATCH 41/42] Remove old Docker build file

---
 docker-compose-build.yaml | 24 ------------------------
 1 file changed, 24 deletions(-)
 delete mode 100644 docker-compose-build.yaml

diff --git a/docker-compose-build.yaml b/docker-compose-build.yaml
deleted file mode 100644
index 3dc50d4d5..000000000
--- a/docker-compose-build.yaml
+++ /dev/null
@@ -1,24 +0,0 @@
-# PY_VER=3.9 IMAGE=djbase DISTRO=debian DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py) HOST_UID=$(id -u) docker compose -f docker-compose-build.yaml up --exit-code-from app --build
-#
-# Intended for updating dependencies and docker image.
-# Used to build release artifacts.
-version: "2.4"
-services:
-  app:
-    build:
-      context: .
-      args:
-        - PY_VER
-        - DISTRO
-        - IMAGE
-    image: datajoint/datajoint:${DJ_VERSION}
-    user: ${HOST_UID}:anaconda
-    volumes:
-      - .:/main
-    command:
-      - sh
-      - -c
-      - |
-        set -e
-        rm -R build dist *.egg-info || echo "No prev build"
-        python setup.py bdist_wheel sdist
\ No newline at end of file

From 618a8d510939bfd31c8e3458915bd5b29d055152 Mon Sep 17 00:00:00 2001
From: Ethan Ho <53266718+ethho@users.noreply.github.com>
Date: Fri, 20 Sep 2024 17:55:58 -0500
Subject: [PATCH 42/42] Test Python 3.12 in CI

Fixes #1165
---
 .github/workflows/development.yaml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/development.yaml b/.github/workflows/development.yaml
index b2f9bdcfb..119c1cd7a 100644
--- a/.github/workflows/development.yaml
+++ b/.github/workflows/development.yaml
@@ -61,6 +61,8 @@ jobs:
         py_ver: ["3.9"]
         mysql_ver: ["8.0", "5.7"]
         include:
+          - py_ver: "3.12"
+            mysql_ver: "8.0"
           - py_ver: "3.11"
             mysql_ver: "8.0"
           - py_ver: "3.10"