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While the TreeTokenizer wrapper in geniml (ITTokenizer) is nice because it is abstract and can tokenize BED files and AnnData objects, I think that it makes more sense to just create a separate AnnData tokenizer. That way, we might not need a a wrapper in geniml and can just use the tokenizers directly when there is separation of concern.
It can still use an interval tree internally, but it will explicitly look for AnnData objects instead of bed files.
The text was updated successfully, but these errors were encountered:
While the
TreeTokenizer
wrapper ingeniml
(ITTokenizer
) is nice because it is abstract and can tokenize BED files andAnnData
objects, I think that it makes more sense to just create a separateAnnData
tokenizer. That way, we might not need a a wrapper ingeniml
and can just use the tokenizers directly when there is separation of concern.It can still use an interval tree internally, but it will explicitly look for
AnnData
objects instead of bed files.The text was updated successfully, but these errors were encountered: