diff --git a/docs/Points.md b/docs/Points.md index c6d1884..89e6bcc 100644 --- a/docs/Points.md +++ b/docs/Points.md @@ -36,7 +36,7 @@ import plantcv.plantcv as pcv import plantcv.annotate as an # Create an instance of the Points class -marker = an.Points(img=img, figsize=(12,6)) +marker = an.Points(img=img, figsize=(12,6), label='default') # Click on the plotted image to collect coordinates @@ -62,7 +62,10 @@ Using [Jupyter Notebooks](https://plantcv.readthedocs.io/en/stable/jupyter/) it - num - The number of unique objects in the `corrected_mask`. - **Context:** - - Filters objects from the `bin_mask` if they do not overlap with an annotation in the `Points` class instance. Also adds a labeled pixel to the corrected mask if an object cannot be resolved for any annotations. Also returns the number of unique objects in the `corrected_mask` which is useful for downstream analysis. + - Filters objects from the `bin_mask` if they do not overlap with an annotation in the `Points` class instance. + - Adds a labeled pixel to the corrected mask if an object cannot be resolved for any annotations (false negatives can be counted but cannot have their size measured downstream). + - Returns the number of unique objects in the `corrected_mask` which is useful for downstream analysis. + - Debug image is a colorized representation of the labeled mask. The "unresolved" annotation replicates are plotted with a radius of `pcv.params.line_thickness` (default = 5). - **Example use:** - Remove noise from a microscopy image that is otherwise difficult to filter out with traditional computer vision