diff --git a/000010/DataJoint/DJ-NWB-Li-Daie-2015-2016/notebooks/Li-2015-examples.ipynb b/000010/DataJoint/DJ-NWB-Li-Daie-2015-2016/notebooks/Li-2015-examples.ipynb
index 2be2502..500979b 100644
--- a/000010/DataJoint/DJ-NWB-Li-Daie-2015-2016/notebooks/Li-2015-examples.ipynb
+++ b/000010/DataJoint/DJ-NWB-Li-Daie-2015-2016/notebooks/Li-2015-examples.ipynb
@@ -2111,9 +2111,9 @@
"metadata": {},
"source": [
"For each group of **contra** vs. **ipsi** selective units, the units are further sorted in to three categories:\n",
- "+ unit exibited selectivity during **sample** or **delay** and not **response** period\n",
- "+ unit exibited selectivity during **sample** or **delay** and **response** period\n",
- "+ unit exibited selectivity only during **response** period"
+ "+ unit exhibited selectivity during **sample** or **delay** and not **response** period\n",
+ "+ unit exhibited selectivity during **sample** or **delay** and **response** period\n",
+ "+ unit exhibited selectivity only during **response** period"
]
},
{
diff --git a/000728/AllenInstitute/visual_coding_ophys_tutorial.ipynb b/000728/AllenInstitute/visual_coding_ophys_tutorial.ipynb
index c64693d..9e792e6 100644
--- a/000728/AllenInstitute/visual_coding_ophys_tutorial.ipynb
+++ b/000728/AllenInstitute/visual_coding_ophys_tutorial.ipynb
@@ -1596,7 +1596,7 @@
"Monitor was positioned 15 cm from the mouse's eye, and spanned 120 degrees x 95 degrees of visual space without accounting for stimulus warping.\n",
"\n",
"Each monitor was gamma corrected using a USB-650 Red Tide Spectrometer (Ocean Optics). Luminance was measured using a SpectroCAL MKII Spectroradiometer (Cambridge Research Systems). Monitors were used at a brightness setting of 30% and contrast at 50%, corresponding to mean luminance of 50 cd/m^2.\n",
- "identifier: 8bc0aa1c-49f6-4e35-a90b-ddc2b7cc7bc0
session_start_time
2016-02-04 10:25:24-08:00timestamps_reference_time
2016-02-04 10:25:24-08:00file_create_date
0
2024-03-23 01:03:19.871158-04:00acquisition
MotionCorrectedTwoPhotonSeries
resolution: -1.0
comments: no comments
description: Motion corrected flourescence from calcium imaging recording. Refer to the 'MotionCorrectionShiftsPerFrame' series to see how each frame was shifted.
conversion: 1.0
offset: 0.0
unit: n.a.
data
timestamps
timestamps_unit: seconds
interval: 1
imaging_plane
optical_channel
0
description: An optical channel used to collection light emission during two-photon calcium imaging.
emission_lambda: nan
description: The imaging plane sampled by the two-photon calcium imaging at a depth of {depth} µm.
device
description: A Nikon A1R-MP multiphoton microscope. This system was adapted to provide space to accommodate the behavior apparatus.
manufacturer: Nikon
excitation_lambda: 910.0
indicator: GCaMP6f
location: VISp
conversion: 1.0
unit: meters
origin_coords_unit: meters
grid_spacing
grid_spacing_unit: micrometers
timestamp_link
0: acquisition/MotionCorrectionShiftsPerFrame/timestamps
MotionCorrectionShiftsPerFrame
resolution: -1.0
comments: no comments
description: The continuous column (first value of the second axis) and row (second value of second axis) shiftsestimated by motion correction. Actual pixel shifts per axis are the nearest integer to these values.
conversion: 1.0
offset: 0.0
unit: n.a.
data
timestamps (link to acquisition/MotionCorrectedTwoPhotonSeries/timestamps)
timestamps_unit: seconds
interval: 1
epoch_tags
set()devices
Microscope
description: A Nikon A1R-MP multiphoton microscope. This system was adapted to provide space to accommodate the behavior apparatus.
manufacturer: Nikon
imaging_planes
ImagingPlane
optical_channel
0
description: An optical channel used to collection light emission during two-photon calcium imaging.
emission_lambda: nan
description: The imaging plane sampled by the two-photon calcium imaging at a depth of {depth} µm.
device
description: A Nikon A1R-MP multiphoton microscope. This system was adapted to provide space to accommodate the behavior apparatus.
manufacturer: Nikon
excitation_lambda: 910.0
indicator: GCaMP6f
location: VISp
conversion: 1.0
unit: meters
origin_coords_unit: meters
grid_spacing
grid_spacing_unit: micrometers
subject
age: P104D
age__reference: birth
description: Mus musculus in vivo.
genotype: Cux2-CreERT2/wt;Camk2a-tTA/wt;Ai93(TITL-GCaMP6f)/Ai93(TITL-GCaMP6f)
sex: M
species: Mus musculus
subject_id: 495727015
strain: Cux2-CreERT2;Camk2a-tTA;Ai93-222426
experiment_description: For more information, please see http://help.brain-map.org/display/observatory/Allen+Brain+Observatory
session_id: 501559087-StimB
institution: Allen Institute for Brain Science
data_collection: Generated by pipeline Brain Observatory version 3.0.
notes: Container ID: 511510736\n",
+ "
identifier: 8bc0aa1c-49f6-4e35-a90b-ddc2b7cc7bc0
session_start_time
2016-02-04 10:25:24-08:00timestamps_reference_time
2016-02-04 10:25:24-08:00file_create_date
0
2024-03-23 01:03:19.871158-04:00acquisition
MotionCorrectedTwoPhotonSeries
resolution: -1.0
comments: no comments
description: Motion corrected fluorescence from calcium imaging recording. Refer to the 'MotionCorrectionShiftsPerFrame' series to see how each frame was shifted.
conversion: 1.0
offset: 0.0
unit: n.a.
data
timestamps
timestamps_unit: seconds
interval: 1
imaging_plane
optical_channel
0
description: An optical channel used to collection light emission during two-photon calcium imaging.
emission_lambda: nan
description: The imaging plane sampled by the two-photon calcium imaging at a depth of {depth} µm.
device
description: A Nikon A1R-MP multiphoton microscope. This system was adapted to provide space to accommodate the behavior apparatus.
manufacturer: Nikon
excitation_lambda: 910.0
indicator: GCaMP6f
location: VISp
conversion: 1.0
unit: meters
origin_coords_unit: meters
grid_spacing
grid_spacing_unit: micrometers
timestamp_link
0: acquisition/MotionCorrectionShiftsPerFrame/timestamps
MotionCorrectionShiftsPerFrame
resolution: -1.0
comments: no comments
description: The continuous column (first value of the second axis) and row (second value of second axis) shiftsestimated by motion correction. Actual pixel shifts per axis are the nearest integer to these values.
conversion: 1.0
offset: 0.0
unit: n.a.
data
timestamps (link to acquisition/MotionCorrectedTwoPhotonSeries/timestamps)
timestamps_unit: seconds
interval: 1
epoch_tags
set()devices
Microscope
description: A Nikon A1R-MP multiphoton microscope. This system was adapted to provide space to accommodate the behavior apparatus.
manufacturer: Nikon
imaging_planes
ImagingPlane
optical_channel
0
description: An optical channel used to collection light emission during two-photon calcium imaging.
emission_lambda: nan
description: The imaging plane sampled by the two-photon calcium imaging at a depth of {depth} µm.
device
description: A Nikon A1R-MP multiphoton microscope. This system was adapted to provide space to accommodate the behavior apparatus.
manufacturer: Nikon
excitation_lambda: 910.0
indicator: GCaMP6f
location: VISp
conversion: 1.0
unit: meters
origin_coords_unit: meters
grid_spacing
grid_spacing_unit: micrometers
subject
age: P104D
age__reference: birth
description: Mus musculus in vivo.
genotype: Cux2-CreERT2/wt;Camk2a-tTA/wt;Ai93(TITL-GCaMP6f)/Ai93(TITL-GCaMP6f)
sex: M
species: Mus musculus
subject_id: 495727015
strain: Cux2-CreERT2;Camk2a-tTA;Ai93-222426
experiment_description: For more information, please see http://help.brain-map.org/display/observatory/Allen+Brain+Observatory
session_id: 501559087-StimB
institution: Allen Institute for Brain Science
data_collection: Generated by pipeline Brain Observatory version 3.0.
notes: Container ID: 511510736\n",
"Mouse ID (from genotype white paper): 222426\n",
"Session type: three_session_B
protocol: 20160204_222426_3StimB
"
],
@@ -1698,7 +1698,7 @@
" });\n",
" });\n",
" \n",
- " resolution: -1.0
comments: no comments
description: Motion corrected flourescence from calcium imaging recording. Refer to the 'MotionCorrectionShiftsPerFrame' series to see how each frame was shifted.
conversion: 1.0
offset: 0.0
unit: n.a.
data
timestamps
timestamps_unit: seconds
interval: 1
imaging_plane
optical_channel
0
description: An optical channel used to collection light emission during two-photon calcium imaging.
emission_lambda: nan
description: The imaging plane sampled by the two-photon calcium imaging at a depth of {depth} µm.
device
description: A Nikon A1R-MP multiphoton microscope. This system was adapted to provide space to accommodate the behavior apparatus.
manufacturer: Nikon
excitation_lambda: 910.0
indicator: GCaMP6f
location: VISp
conversion: 1.0
unit: meters
origin_coords_unit: meters
grid_spacing
grid_spacing_unit: micrometers
timestamp_link
0: acquisition/MotionCorrectionShiftsPerFrame/timestamps
resolution: -1.0
comments: no comments
description: Motion corrected fluorescence from calcium imaging recording. Refer to the 'MotionCorrectionShiftsPerFrame' series to see how each frame was shifted.
conversion: 1.0
offset: 0.0
unit: n.a.
data
timestamps
timestamps_unit: seconds
interval: 1
imaging_plane
optical_channel
0
description: An optical channel used to collection light emission during two-photon calcium imaging.
emission_lambda: nan
description: The imaging plane sampled by the two-photon calcium imaging at a depth of {depth} µm.
device
description: A Nikon A1R-MP multiphoton microscope. This system was adapted to provide space to accommodate the behavior apparatus.
manufacturer: Nikon
excitation_lambda: 910.0
indicator: GCaMP6f
location: VISp
conversion: 1.0
unit: meters
origin_coords_unit: meters
grid_spacing
grid_spacing_unit: micrometers
timestamp_link
0: acquisition/MotionCorrectionShiftsPerFrame/timestamps