From a6704745f3cb037112437b65d39521f01acfef84 Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Fri, 1 Mar 2024 17:16:20 -0500
Subject: [PATCH] [DATALAD RUNCMD] Rename SPECIES_URI_TEMPLATE into
 NCBITAXON_URI_TEMPLATE

since otherwise while looking at the use not clear
what that index is.  May be later it would be even
some other level (but still the same template) than species
so best to just mention that it is NCBITAXON URL

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "git-sedi SPECIES_URI_TEMPLATE NCBITAXON_URI_TEMPLATE",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
---
 dandi/metadata/util.py | 24 ++++++++++++------------
 1 file changed, 12 insertions(+), 12 deletions(-)

diff --git a/dandi/metadata/util.py b/dandi/metadata/util.py
index e517928e4..8849a9164 100644
--- a/dandi/metadata/util.py
+++ b/dandi/metadata/util.py
@@ -329,68 +329,68 @@ def extract_cellLine(metadata: dict) -> str | None:
         return None
 
 
-SPECIES_URI_TEMPLATE = "http://purl.obolibrary.org/obo/NCBITaxon_{}"
+NCBITAXON_URI_TEMPLATE = "http://purl.obolibrary.org/obo/NCBITaxon_{}"
 
 # common_names, prefix, uri, name
 species_map = [
     (
         ["mouse"],
         "mus",
-        SPECIES_URI_TEMPLATE.format("10090"),
+        NCBITAXON_URI_TEMPLATE.format("10090"),
         "Mus musculus - House mouse",
     ),
     (
         ["human"],
         "homo",
-        SPECIES_URI_TEMPLATE.format("9606"),
+        NCBITAXON_URI_TEMPLATE.format("9606"),
         "Homo sapiens - Human",
     ),
     (
         ["rat", "norvegicus"],
         None,
-        SPECIES_URI_TEMPLATE.format("10116"),
+        NCBITAXON_URI_TEMPLATE.format("10116"),
         "Rattus norvegicus - Norway rat",
     ),
     (
         ["rattus rattus"],
         None,
-        SPECIES_URI_TEMPLATE.format("10117"),
+        NCBITAXON_URI_TEMPLATE.format("10117"),
         "Rattus rattus - Black rat",
     ),
     (
         ["mulatta", "rhesus"],
         None,
-        SPECIES_URI_TEMPLATE.format("9544"),
+        NCBITAXON_URI_TEMPLATE.format("9544"),
         "Macaca mulatta - Rhesus monkey",
     ),
     (
         ["jacchus"],
         None,
-        SPECIES_URI_TEMPLATE.format("9483"),
+        NCBITAXON_URI_TEMPLATE.format("9483"),
         "Callithrix jacchus - Common marmoset",
     ),
     (
         ["melanogaster", "fruit fly"],
         None,
-        SPECIES_URI_TEMPLATE.format("7227"),
+        NCBITAXON_URI_TEMPLATE.format("7227"),
         "Drosophila melanogaster - Fruit fly",
     ),
     (
         ["danio", "zebrafish", "zebra fish"],
         None,
-        SPECIES_URI_TEMPLATE.format("7955"),
+        NCBITAXON_URI_TEMPLATE.format("7955"),
         "Danio rerio - Zebra fish",
     ),
     (
         ["c. elegans", "caenorhabditis elegans"],
         "caenorhabditis",
-        SPECIES_URI_TEMPLATE.format("6239"),
+        NCBITAXON_URI_TEMPLATE.format("6239"),
         "Caenorhabditis elegans",
     ),
     (
         ["pig-tailed macaque", "pigtail monkey", "pigtail macaque"],
         None,
-        SPECIES_URI_TEMPLATE.format("9545"),
+        NCBITAXON_URI_TEMPLATE.format("9545"),
         "Macaca nemestrina",
     ),
 ]
@@ -441,7 +441,7 @@ def extract_species(metadata: dict) -> models.SpeciesType | None:
             value_orig,
             flags=re.I,
         ):
-            normed_value = SPECIES_URI_TEMPLATE.format(m[1])
+            normed_value = NCBITAXON_URI_TEMPLATE.format(m[1])
             for _common_names, _prefix, uri, name in species_map:
                 if uri == normed_value:
                     value_id = uri