diff --git a/nextflow_schema.json b/nextflow_schema.json index 7183bc6..c8f1b68 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -11,7 +11,6 @@ "fa_icon": "fas fa-terminal", "description": "Define where the pipeline should find input data and save output data.", "required": [ - "input", "outdir" ], "properties": { @@ -154,9 +153,6 @@ "description": "Run Kraken2 classifier" } }, - "required": [ - "kaiju_db" - ], "fa_icon": "fab fa-pagelines" }, "functional": { @@ -404,8 +400,7 @@ "type": "string", "description": "Custom logo file to supply to MultiQC. File name must also be set in the MultiQC config file", "fa_icon": "fas fa-image", - "hidden": true, - "default": "/home/jvfe/dev/pesquisa/dalmolingroup-euryale/assets/euryale_logo.png" + "hidden": true }, "multiqc_methods_description": { "type": "string", @@ -415,7 +410,7 @@ "tracedir": { "type": "string", "description": "Directory to keep pipeline Nextflow logs and reports.", - "default": "null/pipeline_info", + "default": "${params.outdir}/pipeline_info", "fa_icon": "fas fa-cogs", "hidden": true },