Error map generation for AMICO

[tjmurdy]

Hi Dr. Daducci,

For reasons related to image acquisition, a reviewer has asked for an error map for my NODDI study, for which I used the AMICO NODDI model. Do you have code to generate error maps for the python implementation of AMICO?

Thank you!

[daducci]

Dear @tjmurdy,

This can be achieved via the config parameter doComputeNRMSE; here is a code snippet for that:

import amico
AMICO = amico.Evaluation('<STUDY PATH>','<SUBJECT PATH>')
AMICO.set_config( 'doComputeNRMSE', True )
...

and after the fit you will find the file named FIT_nrmse.nii.gz in the output folder.

Best,
Ale