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Update references and citations on stable branch #168

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76 changes: 46 additions & 30 deletions CITATION.rst
Original file line number Diff line number Diff line change
Expand Up @@ -4,33 +4,49 @@ Citation
If you use the Basic Model Interface for work/research
presented in a publication, we ask that you please cite:

Peckham, S.D., Hutton, E.W., and Norris, B., 2013. A component-based approach to integrated modeling in the geosciences: The design of CSDMS. *Computers & Geosciences*, 53, pp.3-12, https://doi.org/10.1016/j.cageo.2012.04.002.

Hutton, E.W.H., Piper, M.D., and Tucker, G.E., 2020. The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences. *Journal of Open Source Software*, 5(51), 2317, https://doi.org/10.21105/joss.02317

BibTeX entries:

::

@article{peckham2013component,
title={A component-based approach to integrated modeling in the geosciences: The design of CSDMS},
author={Peckham, Scott D and Hutton, Eric WH and Norris, Boyana},
journal={Computers \& Geosciences},
volume={53},
pages={3--12},
year={2013},
publisher={Elsevier}
}

@article{hutton2020basic,
doi = {10.21105/joss.02317},
url = {https://doi.org/10.21105/joss.02317},
year = {2020},
publisher = {The Open Journal},
volume = {5},
number = {51},
pages = {2317},
author = {Eric W.H. Hutton and Mark D. Piper and Gregory E. Tucker},
title = {The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences},
journal = {Journal of Open Source Software}
}
.. tab-set::

.. tab-item:: APA

Peckham, S.D., Hutton, E.W., and Norris, B., 2013. **A component-based
approach to integrated modeling in the geosciences: The design of CSDMS**.
*Computers & Geosciences*, 53, pp.3-12,
https://doi.org/10.1016/j.cageo.2012.04.002.

Hutton, E.W.H., Piper, M.D., and Tucker, G.E., 2020. **The Basic Model
Interface 2.0: A standard interface for coupling numerical models in the
geosciences**. *Journal of Open Source Software*, 5(51), 2317,
https://doi.org/10.21105/joss.02317.

.. tab-item:: BibTeX

.. code:: bibtex

@article{peckham2013component,
title={
A component-based approach to integrated modeling in the
geosciences: The design of CSDMS
},
author={Peckham, Scott D and Hutton, Eric WH and Norris, Boyana},
journal={Computers \& Geosciences},
volume={53},
pages={3--12},
year={2013},
publisher={Elsevier}
}

@article{hutton2020basic,
doi={10.21105/joss.02317},
url={https://doi.org/10.21105/joss.02317},
year={2020},
publisher={The Open Journal},
volume={5},
number={51},
pages={2317},
author={Eric W.H. Hutton and Mark D. Piper and Gregory E. Tucker},
title={
The Basic Model Interface 2.0: A standard interface for coupling
numerical models in the geosciences
},
journal={Journal of Open Source Software}
}
1 change: 1 addition & 0 deletions docs/requirements.txt
Original file line number Diff line number Diff line change
@@ -1,2 +1,3 @@
furo
sphinx
sphinx_design
1 change: 1 addition & 0 deletions docs/source/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,7 @@
"sphinx.ext.todo",
"sphinx.ext.imgmath",
"sphinx.ext.viewcode",
"sphinx_design",
]

# Add any paths that contain templates here, relative to this directory.
Expand Down
60 changes: 29 additions & 31 deletions docs/source/references.rst
Original file line number Diff line number Diff line change
Expand Up @@ -4,46 +4,44 @@ References
==========

Community Surface Dynamics Modeling System (CSDMS)
--------------------------------------------------

Syvitski, James P; Hutton, Eric; Piper, Mark; Overeem, Irina;
Kettner, Albert; Peckham, Scott (2014): "Plug and play component
modeling--the CSDMS 2.0 approach", *International Environmental
Modelling and Software Society (iEMSs), 7th International Congress
on Environmental Modelling and Software* (Ames DP, Quinn N., eds),
San Diego, CA, USA.
https://scholarsarchive.byu.edu/iemssconference/2014/Stream-B/4/ (retrieved 2023-11-23).
Tucker, G. E., Hutton, E. W., Piper, M. D., Campforts, B., Gan,
T., Barnhart, K. R., Kettner, A. J., Overeem, I., Peckham, S. D.,
McCready, L., and Syvitski, J. (2022). **CSDMS: a
community platform for numerical modeling of Earth surface
processes**. Geoscientific Model Development, 15(4), 1413-1439,
https://doi.org/10.5194/gmd-15-1413-2022.

Basic Model Interface (BMI)
---------------------------

Peckham, Scott D; Hutton, Eric WH; Norris, Boyana (2013): "A
component-based approach to integrated modeling in the
geosciences: The design of CSDMS", *Computers & Geosciences*,
**53**: 3-12, ISSN 0098-3004,
https://doi.org/10.1016/j.cageo.2012.04.002.
Peckham, Scott D; Hutton, Eric WH; Norris, Boyana (2013): **"A
component-based approach to integrated modeling in the
geosciences: The design of CSDMS"**, *Computers & Geosciences*,
**53**: 3-12, ISSN 0098-3004,
https://doi.org/10.1016/j.cageo.2012.04.002.

Hutton, Eric WH; Piper, Mark D; Tucker, Gregory E (2020): "The Basic
Model Interface 2.0: A standard interface for coupling numerical
models in the geosciences", *Journal of Open Source Software*,
**5(51)**, 2317, https://doi.org/10.21105/joss.02317.
Hutton, Eric WH; Piper, Mark D; Tucker, Gregory E (2020): **"The Basic
Model Interface 2.0: A standard interface for coupling numerical
models in the geosciences"**, *Journal of Open Source Software*,
**5(51)**, 2317, https://doi.org/10.21105/joss.02317.

Scientific Interface Definition Language (SIDL)
-----------------------------------------------

Dahlgren, Tamara; Ebner, Dietmar; Epperly, Thomas; Kumfert, Gary;
Leek, James; Prantl, Adrian (2012): "Babel User's Guide: Part I
Foundation: SIDL Basics".
https://computing.llnl.gov/projects/babel-high-performance-language-interoperability/docs/users_guide/index008.html (retrieved 2019-10-09).

Epperly, Thomas GW; Kumfert, Gary; Dahlgren, Tamara; Ebner, Dietmar;
Leek, Jim; Prantl, Adrian; Kohn, Scott (2011): "High-performance
language interoperability for scientific computing through
Babel". *The International Journal of High Performance Computing
Applications*. **26** (3): 260–274.
https://doi.org/10.1177/1094342011414036
Epperly, Thomas GW; Kumfert, Gary; Dahlgren, Tamara; Ebner, Dietmar;
Leek, Jim; Prantl, Adrian; Kohn, Scott (2011): "High-performance
language interoperability for scientific computing through
Babel". *The International Journal of High Performance Computing
Applications*. **26** (3): 260–274.
https://doi.org/10.1177/1094342011414036

Model grids
-----------

Hoffmann, Klaus A; Chiang, Steve T (2000): Computational Fluid
Dynamics Volume I. Third edition. *Engineering Education System*.
Hoffmann, Klaus A; Chiang, Steve T (2000): **Computational Fluid
Dynamics Volume I**. Third edition. *Engineering Education System*.

Slingerland, Rudy; Kump, Lee (2011): Mathematical Modeling of
Earth's Dynamical Systems: A Primer. *Princeton University Press*.
Slingerland, Rudy; Kump, Lee (2011): **Mathematical Modeling of
Earth's Dynamical Systems: A Primer**. *Princeton University Press*.
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