From b6a2f54adbacbe47f05394cf34a53789b4db68d5 Mon Sep 17 00:00:00 2001 From: Github Action Date: Sun, 15 Dec 2024 01:55:19 +0000 Subject: [PATCH] sync --- specs/R-CRAN-CausalQueries.spec | 4 +-- specs/R-CRAN-DiscreteFDR.spec | 8 ++--- specs/R-CRAN-SimDesign.spec | 8 ++--- specs/R-CRAN-SoilConservation.spec | 4 +-- specs/R-CRAN-Virusparies.spec | 8 ++--- specs/R-CRAN-arules.spec | 4 +-- specs/R-CRAN-bqror.spec | 4 +-- specs/R-CRAN-ctrdata.spec | 8 ++--- specs/R-CRAN-dgpsi.spec | 24 +++++++++++---- specs/R-CRAN-eHOF.spec | 4 +-- specs/R-CRAN-frailtypack.spec | 4 +-- specs/R-CRAN-gdverse.spec | 8 ++--- specs/R-CRAN-legendry.spec | 4 +-- specs/R-CRAN-lovecraftr.spec | 10 +++++-- specs/R-CRAN-metan.spec | 16 +++++----- specs/R-CRAN-rsmatrix.spec | 4 +-- specs/R-CRAN-skewlmm.spec | 48 ++++++++++++++++-------------- specs/R-CRAN-spOccupancy.spec | 4 +-- 18 files changed, 98 insertions(+), 76 deletions(-) diff --git a/specs/R-CRAN-CausalQueries.spec b/specs/R-CRAN-CausalQueries.spec index fa650d5fe..6bbc23e2d 100644 --- a/specs/R-CRAN-CausalQueries.spec +++ b/specs/R-CRAN-CausalQueries.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname CausalQueries -%global packver 1.2.1 +%global packver 1.3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2.1 +Version: 1.3.0 Release: 1%{?dist}%{?buildtag} Summary: Make, Update, and Query Binary Causal Models diff --git a/specs/R-CRAN-DiscreteFDR.spec b/specs/R-CRAN-DiscreteFDR.spec index bee3d7e8f..b74a19af3 100644 --- a/specs/R-CRAN-DiscreteFDR.spec +++ b/specs/R-CRAN-DiscreteFDR.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname DiscreteFDR -%global packver 2.0.1 +%global packver 2.1.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.1 +Version: 2.1.0 Release: 1%{?dist}%{?buildtag} Summary: FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests @@ -17,13 +17,13 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.00 Requires: R-core >= 3.00 BuildRequires: R-CRAN-Rcpp >= 1.0.12 -BuildRequires: R-CRAN-DiscreteTests +BuildRequires: R-CRAN-DiscreteTests >= 0.2.1 BuildRequires: R-CRAN-lifecycle BuildRequires: R-CRAN-checkmate BuildRequires: R-CRAN-DiscreteDatasets BuildRequires: R-CRAN-RcppArmadillo Requires: R-CRAN-Rcpp >= 1.0.12 -Requires: R-CRAN-DiscreteTests +Requires: R-CRAN-DiscreteTests >= 0.2.1 Requires: R-CRAN-lifecycle Requires: R-CRAN-checkmate Requires: R-CRAN-DiscreteDatasets diff --git a/specs/R-CRAN-SimDesign.spec b/specs/R-CRAN-SimDesign.spec index a97378064..e1170c88b 100644 --- a/specs/R-CRAN-SimDesign.spec +++ b/specs/R-CRAN-SimDesign.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname SimDesign -%global packver 2.17.1 +%global packver 2.18 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.17.1 +Version: 2.18 Release: 1%{?dist}%{?buildtag} Summary: Structure for Organizing Monte Carlo Simulation Designs @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.5.0 -Requires: R-core >= 3.5.0 +BuildRequires: R-devel >= 4.1.0 +Requires: R-core >= 4.1.0 BuildArch: noarch BuildRequires: R-CRAN-pbapply >= 1.3.0 BuildRequires: R-methods diff --git a/specs/R-CRAN-SoilConservation.spec b/specs/R-CRAN-SoilConservation.spec index b3cdcc253..0cea9229e 100644 --- a/specs/R-CRAN-SoilConservation.spec +++ b/specs/R-CRAN-SoilConservation.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname SoilConservation -%global packver 1.0.0 +%global packver 1.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0 +Version: 1.0.1 Release: 1%{?dist}%{?buildtag} Summary: Soil and Water Conservation diff --git a/specs/R-CRAN-Virusparies.spec b/specs/R-CRAN-Virusparies.spec index 5d6887f56..85f1da682 100644 --- a/specs/R-CRAN-Virusparies.spec +++ b/specs/R-CRAN-Virusparies.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname Virusparies -%global packver 1.0.0 +%global packver 1.1.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0 +Version: 1.1.0 Release: 1%{?dist}%{?buildtag} Summary: Visualize and Process Output from 'VirusHunterGatherer' @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 2.10 -Requires: R-core >= 2.10 +BuildRequires: R-devel >= 3.5 +Requires: R-core >= 3.5 BuildArch: noarch BuildRequires: R-CRAN-chromote BuildRequires: R-CRAN-cowplot diff --git a/specs/R-CRAN-arules.spec b/specs/R-CRAN-arules.spec index f0d700c44..90505da13 100644 --- a/specs/R-CRAN-arules.spec +++ b/specs/R-CRAN-arules.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname arules -%global packver 1.7-8 +%global packver 1.7-9 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.7.8 +Version: 1.7.9 Release: 1%{?dist}%{?buildtag} Summary: Mining Association Rules and Frequent Itemsets diff --git a/specs/R-CRAN-bqror.spec b/specs/R-CRAN-bqror.spec index 373a4eba1..af9331ebe 100644 --- a/specs/R-CRAN-bqror.spec +++ b/specs/R-CRAN-bqror.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname bqror -%global packver 1.7.0 +%global packver 1.7.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.7.0 +Version: 1.7.1 Release: 1%{?dist}%{?buildtag} Summary: Bayesian Quantile Regression for Ordinal Models diff --git a/specs/R-CRAN-ctrdata.spec b/specs/R-CRAN-ctrdata.spec index 30570d131..22cb87fa4 100644 --- a/specs/R-CRAN-ctrdata.spec +++ b/specs/R-CRAN-ctrdata.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ctrdata -%global packver 1.19.5 +%global packver 1.20.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.19.5 +Version: 1.20.0 Release: 1%{?dist}%{?buildtag} Summary: Retrieve and Analyze Clinical Trials in Public Registers @@ -24,7 +24,6 @@ BuildRequires: R-CRAN-httr BuildRequires: R-CRAN-clipr BuildRequires: R-CRAN-xml2 BuildRequires: R-CRAN-stringi -BuildRequires: R-CRAN-tibble BuildRequires: R-CRAN-lubridate BuildRequires: R-CRAN-jqr BuildRequires: R-CRAN-dplyr @@ -33,6 +32,7 @@ BuildRequires: R-CRAN-V8 BuildRequires: R-CRAN-readr BuildRequires: R-CRAN-digest BuildRequires: R-CRAN-countrycode +BuildRequires: R-CRAN-htmlwidgets Requires: R-CRAN-curl >= 5.1.0 Requires: R-CRAN-nodbi >= 0.10.7 Requires: R-CRAN-jsonlite @@ -40,7 +40,6 @@ Requires: R-CRAN-httr Requires: R-CRAN-clipr Requires: R-CRAN-xml2 Requires: R-CRAN-stringi -Requires: R-CRAN-tibble Requires: R-CRAN-lubridate Requires: R-CRAN-jqr Requires: R-CRAN-dplyr @@ -49,6 +48,7 @@ Requires: R-CRAN-V8 Requires: R-CRAN-readr Requires: R-CRAN-digest Requires: R-CRAN-countrycode +Requires: R-CRAN-htmlwidgets %description A system for querying, retrieving and analyzing protocol- and diff --git a/specs/R-CRAN-dgpsi.spec b/specs/R-CRAN-dgpsi.spec index 92c99e424..568ab61ed 100644 --- a/specs/R-CRAN-dgpsi.spec +++ b/specs/R-CRAN-dgpsi.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname dgpsi -%global packver 2.4.0 +%global packver 2.5.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.4.0 +Version: 2.5.0 Release: 1%{?dist}%{?buildtag} Summary: Interface to 'dgpsi' for Deep and Linked Gaussian Process Emulations @@ -27,10 +27,16 @@ BuildRequires: R-CRAN-patchwork BuildRequires: R-CRAN-lhs BuildRequires: R-methods BuildRequires: R-stats -BuildRequires: R-CRAN-bitops BuildRequires: R-CRAN-clhs BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-uuid +BuildRequires: R-CRAN-tidyr +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-lifecycle +BuildRequires: R-CRAN-magrittr +BuildRequires: R-CRAN-visNetwork +BuildRequires: R-parallel +BuildRequires: R-CRAN-kableExtra Requires: R-CRAN-reticulate >= 1.26 Requires: R-CRAN-benchmarkme >= 1.0.8 Requires: R-utils @@ -41,10 +47,16 @@ Requires: R-CRAN-patchwork Requires: R-CRAN-lhs Requires: R-methods Requires: R-stats -Requires: R-CRAN-bitops Requires: R-CRAN-clhs Requires: R-CRAN-dplyr Requires: R-CRAN-uuid +Requires: R-CRAN-tidyr +Requires: R-CRAN-rlang +Requires: R-CRAN-lifecycle +Requires: R-CRAN-magrittr +Requires: R-CRAN-visNetwork +Requires: R-parallel +Requires: R-CRAN-kableExtra %description Interface to the 'python' package 'dgpsi' for Gaussian process, deep @@ -52,8 +64,8 @@ Gaussian process, and linked deep Gaussian process emulations of computer models and networks using stochastic imputation (SI). The implementations follow Ming & Guillas (2021) and Ming, Williamson, & Guillas (2023) and Ming -& Williamson (2023) . To get started with the package, -see . +& Williamson (2023) . To get started with +the package, see . %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-eHOF.spec b/specs/R-CRAN-eHOF.spec index 7828a1775..31f2bc918 100644 --- a/specs/R-CRAN-eHOF.spec +++ b/specs/R-CRAN-eHOF.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname eHOF -%global packver 1.15 +%global packver 1.16 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.15 +Version: 1.16 Release: 1%{?dist}%{?buildtag} Summary: Extended HOF (Huisman-Olff-Fresco) Models diff --git a/specs/R-CRAN-frailtypack.spec b/specs/R-CRAN-frailtypack.spec index d36547d7c..5c86189dc 100644 --- a/specs/R-CRAN-frailtypack.spec +++ b/specs/R-CRAN-frailtypack.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname frailtypack -%global packver 3.6.4 +%global packver 3.6.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.6.4 +Version: 3.6.5 Release: 1%{?dist}%{?buildtag} Summary: Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints diff --git a/specs/R-CRAN-gdverse.spec b/specs/R-CRAN-gdverse.spec index ecac684f9..89eabca0a 100644 --- a/specs/R-CRAN-gdverse.spec +++ b/specs/R-CRAN-gdverse.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname gdverse -%global packver 1.3 +%global packver 1.3-1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3 +Version: 1.3.1 Release: 1%{?dist}%{?buildtag} Summary: Analysis of Spatial Stratified Heterogeneity @@ -16,7 +16,7 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.1.0 Requires: R-core >= 4.1.0 -BuildRequires: R-CRAN-sdsfun >= 0.4.3 +BuildRequires: R-CRAN-sdsfun >= 0.6.0 BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-forcats BuildRequires: R-CRAN-ggplot2 @@ -33,7 +33,7 @@ BuildRequires: R-CRAN-tibble BuildRequires: R-CRAN-tidyr BuildRequires: R-utils BuildRequires: R-CRAN-Rcpp -Requires: R-CRAN-sdsfun >= 0.4.3 +Requires: R-CRAN-sdsfun >= 0.6.0 Requires: R-CRAN-dplyr Requires: R-CRAN-forcats Requires: R-CRAN-ggplot2 diff --git a/specs/R-CRAN-legendry.spec b/specs/R-CRAN-legendry.spec index 8d8f88ca2..b7bb7b089 100644 --- a/specs/R-CRAN-legendry.spec +++ b/specs/R-CRAN-legendry.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname legendry -%global packver 0.1.0 +%global packver 0.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.2.0 Release: 1%{?dist}%{?buildtag} Summary: Extended Legends and Axes for 'ggplot2' diff --git a/specs/R-CRAN-lovecraftr.spec b/specs/R-CRAN-lovecraftr.spec index 7c4e0f73a..5f9e33751 100644 --- a/specs/R-CRAN-lovecraftr.spec +++ b/specs/R-CRAN-lovecraftr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname lovecraftr -%global packver 1.0.0 +%global packver 1.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0 +Version: 1.2.0 Release: 1%{?dist}%{?buildtag} Summary: A Collection of Lovecraftian Tales and Texts @@ -17,6 +17,12 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 2.10 Requires: R-core >= 2.10 BuildArch: noarch +BuildRequires: R-CRAN-magrittr +BuildRequires: R-CRAN-rvest +BuildRequires: R-CRAN-stringr +Requires: R-CRAN-magrittr +Requires: R-CRAN-rvest +Requires: R-CRAN-stringr %description A curated collection of Howard Phillips Lovecraft's complete stories, diff --git a/specs/R-CRAN-metan.spec b/specs/R-CRAN-metan.spec index 92e8887f4..557ef8116 100644 --- a/specs/R-CRAN-metan.spec +++ b/specs/R-CRAN-metan.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname metan -%global packver 1.18.0 +%global packver 1.19.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.18.0 +Version: 1.19.0 Release: 1%{?dist}%{?buildtag} Summary: Multi Environment Trials Analysis @@ -70,12 +70,12 @@ absolute scores by Olivoto et al. (2019a) Olivoto et al. (2019b) . Non-parametric methods includes superiority index by Lin & Binns (1988) , nonparametric measures of phenotypic stability -by Huehn (1990) , -TOP third statistic by Fox et al. (1990) . -Functions for computing biometrical analysis such as path analysis, -canonical correlation, partial correlation, clustering analysis, and tools -for inspecting, manipulating, summarizing and plotting typical -multi-environment trial data are also provided. +by Huehn (1990) , TOP third statistic by Fox et +al. (1990) . Functions for computing biometrical +analysis such as path analysis, canonical correlation, partial +correlation, clustering analysis, and tools for inspecting, manipulating, +summarizing and plotting typical multi-environment trial data are also +provided. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-rsmatrix.spec b/specs/R-CRAN-rsmatrix.spec index 29ce5f759..e4faf9cbb 100644 --- a/specs/R-CRAN-rsmatrix.spec +++ b/specs/R-CRAN-rsmatrix.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname rsmatrix -%global packver 0.2.8 +%global packver 0.2.9 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.8 +Version: 0.2.9 Release: 1%{?dist}%{?buildtag} Summary: Matrices for Repeat-Sales Price Indexes diff --git a/specs/R-CRAN-skewlmm.spec b/specs/R-CRAN-skewlmm.spec index afd8c3f1f..80d60e24e 100644 --- a/specs/R-CRAN-skewlmm.spec +++ b/specs/R-CRAN-skewlmm.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname skewlmm -%global packver 1.1.0 +%global packver 1.1.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.0 +Version: 1.1.2 Release: 1%{?dist}%{?buildtag} Summary: Scale Mixture of Skew-Normal Linear Mixed Models @@ -14,49 +14,53 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 4.2 -Requires: R-core >= 4.2 +BuildRequires: R-devel >= 4.3 +Requires: R-core >= 4.3 BuildArch: noarch BuildRequires: R-CRAN-optimParallel BuildRequires: R-CRAN-dplyr -BuildRequires: R-CRAN-furrr -BuildRequires: R-CRAN-future BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-methods +BuildRequires: R-stats +BuildRequires: R-CRAN-future BuildRequires: R-CRAN-ggrepel BuildRequires: R-CRAN-haven -BuildRequires: R-CRAN-matrixcalc -BuildRequires: R-methods -BuildRequires: R-CRAN-moments -BuildRequires: R-CRAN-MomTrunc BuildRequires: R-CRAN-mvtnorm BuildRequires: R-CRAN-nlme -BuildRequires: R-CRAN-numDeriv BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-furrr +BuildRequires: R-CRAN-matrixcalc +BuildRequires: R-CRAN-moments +BuildRequires: R-CRAN-numDeriv BuildRequires: R-CRAN-relliptical +BuildRequires: R-CRAN-MomTrunc BuildRequires: R-CRAN-TruncatedNormal Requires: R-CRAN-optimParallel Requires: R-CRAN-dplyr -Requires: R-CRAN-furrr -Requires: R-CRAN-future Requires: R-CRAN-ggplot2 +Requires: R-methods +Requires: R-stats +Requires: R-CRAN-future Requires: R-CRAN-ggrepel Requires: R-CRAN-haven -Requires: R-CRAN-matrixcalc -Requires: R-methods -Requires: R-CRAN-moments -Requires: R-CRAN-MomTrunc Requires: R-CRAN-mvtnorm Requires: R-CRAN-nlme -Requires: R-CRAN-numDeriv Requires: R-CRAN-purrr +Requires: R-CRAN-furrr +Requires: R-CRAN-matrixcalc +Requires: R-CRAN-moments +Requires: R-CRAN-numDeriv Requires: R-CRAN-relliptical +Requires: R-CRAN-MomTrunc Requires: R-CRAN-TruncatedNormal %description -It fits scale mixture of skew-normal linear mixed models using an -expectation–maximization (EM) type algorithm, including some possibilities -for modeling the within-subject dependence. Details can be found in -Schumacher, Lachos and Matos (2021) . +It fits scale mixture of skew-normal linear mixed models using either an +expectation–maximization (EM) type algorithm or its accelerated version +(Damped Anderson Acceleration with Epsilon Monotonicity, DAAREM), +including some possibilities for modeling the within-subject dependence. +Details can be found in Schumacher, Lachos and Matos (2021) +. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-spOccupancy.spec b/specs/R-CRAN-spOccupancy.spec index aa6b3e885..947e72b7b 100644 --- a/specs/R-CRAN-spOccupancy.spec +++ b/specs/R-CRAN-spOccupancy.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname spOccupancy -%global packver 0.7.6 +%global packver 0.8.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.7.6 +Version: 0.8.0 Release: 1%{?dist}%{?buildtag} Summary: Single-Species, Multi-Species, and Integrated Spatial Occupancy Models