diff --git a/specs/R-CRAN-AccelStab.spec b/specs/R-CRAN-AccelStab.spec index b5859fd42d..c4c6892a93 100644 --- a/specs/R-CRAN-AccelStab.spec +++ b/specs/R-CRAN-AccelStab.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname AccelStab -%global packver 2.0.1 +%global packver 2.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.1 +Version: 2.0.2 Release: 1%{?dist}%{?buildtag} Summary: Accelerated Stability Kinetic Modelling diff --git a/specs/R-CRAN-COveR.spec b/specs/R-CRAN-COveR.spec new file mode 100644 index 0000000000..1691c8ab12 --- /dev/null +++ b/specs/R-CRAN-COveR.spec @@ -0,0 +1,55 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname COveR +%global packver 1.0.4 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.4 +Release: 1%{?dist}%{?buildtag} +Summary: Clustering with Overlaps + +License: GPL (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.2.3 +Requires: R-core >= 3.2.3 + +%description +Provide functions for overlaps clustering, fuzzy clustering and +interval-valued data manipulation. The package implement the following +algorithms: OKM (Overlapping Kmeans) from Cleuziou, G. (2007) + ; NEOKM (Non-exhaustive overlapping +Kmeans) from Whang, J. J., Dhillon, I. S., and Gleich, D. F. (2015) + ; Fuzzy Cmeans from Bezdek, J. C. (1981) + ; Fuzzy I-Cmeans from de A.T. De Carvalho, +F. (2005) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-Colossus.spec b/specs/R-CRAN-Colossus.spec new file mode 100644 index 0000000000..fb7f48c300 --- /dev/null +++ b/specs/R-CRAN-Colossus.spec @@ -0,0 +1,82 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname Colossus +%global packver 1.1.4.2 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.1.4.2 +Release: 1%{?dist}%{?buildtag} +Summary: "Risk Model Regression and Analysis with Complex Non-Linear Models" + +License: GPL (>= 3) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildRequires: R-CRAN-Rcpp +BuildRequires: R-CRAN-data.table +BuildRequires: R-parallel +BuildRequires: R-stats +BuildRequires: R-utils +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-callr +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-processx +BuildRequires: R-CRAN-RcppEigen +BuildRequires: R-CRAN-testthat +Requires: R-CRAN-Rcpp +Requires: R-CRAN-data.table +Requires: R-parallel +Requires: R-stats +Requires: R-utils +Requires: R-CRAN-rlang +Requires: R-CRAN-callr +Requires: R-CRAN-stringr +Requires: R-CRAN-processx + +%description +Performs survival analysis using general non-linear models. Risk models +can be the sum or product of terms. Each term is the product of +exponential/linear functions of covariates. Additionally sub-terms can be +defined as a sum of exponential, linear threshold, and step functions. Cox +Proportional hazards +, Poisson +, and Fine-Grey +competing risks + +regression are supported. This work was sponsored by NASA Grant +80NSSC19M0161 through a subcontract from the National Council on Radiation +Protection and Measurements (NCRP). The computing for this project was +performed on the Beocat Research Cluster at Kansas State University, which +is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, +ACI-1440548, CHE-1726332, and NIH P20GM113109. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-FuzzyPovertyR.spec b/specs/R-CRAN-FuzzyPovertyR.spec index 79b3485abf..1327b3a99e 100644 --- a/specs/R-CRAN-FuzzyPovertyR.spec +++ b/specs/R-CRAN-FuzzyPovertyR.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname FuzzyPovertyR -%global packver 3.0.1 +%global packver 3.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.0.1 +Version: 3.0.2 Release: 1%{?dist}%{?buildtag} Summary: Estimation of Fuzzy Poverty Measures diff --git a/specs/R-CRAN-LLMR.spec b/specs/R-CRAN-LLMR.spec new file mode 100644 index 0000000000..5c81442d76 --- /dev/null +++ b/specs/R-CRAN-LLMR.spec @@ -0,0 +1,62 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname LLMR +%global packver 0.1.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.1 +Release: 1%{?dist}%{?buildtag} +Summary: Interface for Large Language Model APIs in R + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildArch: noarch +BuildRequires: R-CRAN-httr2 +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-rlang +Requires: R-CRAN-httr2 +Requires: R-CRAN-purrr +Requires: R-CRAN-rlang + +%description +A unified interface to interact with various Large Language Model (LLM) +APIs such as 'OpenAI' (see +for details), 'Anthropic' (see + for details), 'Groq' +(see for details), and +'Together AI' (see for +details). Allows users to configure API parameters, send messages, and +retrieve responses seamlessly within R. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-MECfda.spec b/specs/R-CRAN-MECfda.spec new file mode 100644 index 0000000000..d6c419e2c0 --- /dev/null +++ b/specs/R-CRAN-MECfda.spec @@ -0,0 +1,87 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname MECfda +%global packver 0.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Scalar-on-Function Regression with Measurement Error Correction + +License: GPL-3 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 2.10 +Requires: R-core >= 2.10 +BuildArch: noarch +BuildRequires: R-stats +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-lme4 +BuildRequires: R-CRAN-quantreg +BuildRequires: R-splines +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-MASS +BuildRequires: R-CRAN-Matrix +BuildRequires: R-CRAN-gss +BuildRequires: R-CRAN-corpcor +BuildRequires: R-CRAN-fda +BuildRequires: R-CRAN-magrittr +BuildRequires: R-methods +BuildRequires: R-CRAN-nlme +BuildRequires: R-CRAN-glme +BuildRequires: R-CRAN-mgcv +Requires: R-stats +Requires: R-CRAN-stringr +Requires: R-CRAN-lme4 +Requires: R-CRAN-quantreg +Requires: R-splines +Requires: R-CRAN-dplyr +Requires: R-CRAN-MASS +Requires: R-CRAN-Matrix +Requires: R-CRAN-gss +Requires: R-CRAN-corpcor +Requires: R-CRAN-fda +Requires: R-CRAN-magrittr +Requires: R-methods +Requires: R-CRAN-nlme +Requires: R-CRAN-glme +Requires: R-CRAN-mgcv + +%description +Solve scalar-on-function linear models, including generalized linear mixed +effect model and quantile linear regression model, and bias correction +estimation methods due to measurement error. Details about the measurement +error bias correction methods, see Luan et al. (2023) +, Tekwe et al. (2022) +, Zhang et al. (2023) +, Tekwe et al. (2019) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-OmopViewer.spec b/specs/R-CRAN-OmopViewer.spec new file mode 100644 index 0000000000..47522cec24 --- /dev/null +++ b/specs/R-CRAN-OmopViewer.spec @@ -0,0 +1,87 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname OmopViewer +%global packver 0.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Visualise OMOP Results using 'shiny' Applications + +License: Apache License (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 2.10 +Requires: R-core >= 2.10 +BuildArch: noarch +BuildRequires: R-CRAN-visOmopResults >= 0.4.0 +BuildRequires: R-CRAN-omopgenerics >= 0.3.1 +BuildRequires: R-CRAN-bslib +BuildRequires: R-CRAN-cli +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-DT +BuildRequires: R-CRAN-glue +BuildRequires: R-CRAN-markdown +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-shiny +BuildRequires: R-CRAN-snakecase +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-styler +BuildRequires: R-CRAN-tidyr +BuildRequires: R-CRAN-usethis +BuildRequires: R-CRAN-vctrs +BuildRequires: R-CRAN-yaml +Requires: R-CRAN-visOmopResults >= 0.4.0 +Requires: R-CRAN-omopgenerics >= 0.3.1 +Requires: R-CRAN-bslib +Requires: R-CRAN-cli +Requires: R-CRAN-dplyr +Requires: R-CRAN-DT +Requires: R-CRAN-glue +Requires: R-CRAN-markdown +Requires: R-CRAN-purrr +Requires: R-CRAN-rlang +Requires: R-CRAN-shiny +Requires: R-CRAN-snakecase +Requires: R-CRAN-stringr +Requires: R-CRAN-styler +Requires: R-CRAN-tidyr +Requires: R-CRAN-usethis +Requires: R-CRAN-vctrs +Requires: R-CRAN-yaml + +%description +Visualise results obtained from analysing data mapped to the Observational +Medical Outcomes Partnership (OMOP) common data model using 'shiny' +applications. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-oglcnac.spec b/specs/R-CRAN-Poly4AT.spec similarity index 62% rename from specs/R-CRAN-oglcnac.spec rename to specs/R-CRAN-Poly4AT.spec index bc07b288b5..220c3ac3e2 100644 --- a/specs/R-CRAN-oglcnac.spec +++ b/specs/R-CRAN-Poly4AT.spec @@ -1,48 +1,49 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi -%global packname oglcnac -%global packver 0.1.2 +%global packname Poly4AT +%global packver 1.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.2 +Version: 1.0.1 Release: 1%{?dist}%{?buildtag} -Summary: Processing and Analysis of O-GlcNAcAtlas Data +Summary: Access 'INVEKOS' API for Field Polygons -License: GPL-2 +License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel -Requires: R-core +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 BuildArch: noarch -BuildRequires: R-CRAN-cli +BuildRequires: R-CRAN-shiny +BuildRequires: R-CRAN-sf +BuildRequires: R-CRAN-leaflet +BuildRequires: R-CRAN-geojsonsf BuildRequires: R-CRAN-httr BuildRequires: R-CRAN-jsonlite -BuildRequires: R-CRAN-shiny +BuildRequires: R-CRAN-shinydashboard BuildRequires: R-CRAN-DT -BuildRequires: R-CRAN-bslib +BuildRequires: R-CRAN-leaflet.extras BuildRequires: R-CRAN-readxl -BuildRequires: R-CRAN-glue -Requires: R-CRAN-cli +BuildRequires: R-utils +Requires: R-CRAN-shiny +Requires: R-CRAN-sf +Requires: R-CRAN-leaflet +Requires: R-CRAN-geojsonsf Requires: R-CRAN-httr Requires: R-CRAN-jsonlite -Requires: R-CRAN-shiny +Requires: R-CRAN-shinydashboard Requires: R-CRAN-DT -Requires: R-CRAN-bslib +Requires: R-CRAN-leaflet.extras Requires: R-CRAN-readxl -Requires: R-CRAN-glue +Requires: R-utils %description -Provides tools for processing and analyzing data from the 'O-GlcNAcAtlas' -database , as described in Ma (2021) -. It integrates 'UniProt' - API calls to retrieve additional information. -It is specifically designed for research workflows involving -'O-GlcNAcAtlas' data, providing a flexible and user-friendly interface for -customizing and downloading processed results. Interactive elements allow -users to easily adjust parameters and handle various biological datasets. +A 'shiny' app that allows to access and use the 'INVEKOS' API for field +polygons in Austria. API documentation is available at +. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-ProAE.spec b/specs/R-CRAN-ProAE.spec index c2f4613be9..ef011adddc 100644 --- a/specs/R-CRAN-ProAE.spec +++ b/specs/R-CRAN-ProAE.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ProAE -%global packver 1.0.1 +%global packver 1.0.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.1 +Version: 1.0.3 Release: 1%{?dist}%{?buildtag} Summary: PRO-CTCAE Scoring, Analysis, and Graphical Tools diff --git a/specs/R-CRAN-R2sample.spec b/specs/R-CRAN-R2sample.spec index 3611e4f6d6..d16f52693b 100644 --- a/specs/R-CRAN-R2sample.spec +++ b/specs/R-CRAN-R2sample.spec @@ -1,37 +1,38 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname R2sample -%global packver 1.1.0 +%global packver 2.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.0 +Version: 2.2.0 Release: 1%{?dist}%{?buildtag} -Summary: Two Sample Problem Routines using Permutation +Summary: Various Methods for the Two Sample Problem License: GPL (>= 2) URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel -Requires: R-core +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 BuildRequires: R-CRAN-Rcpp BuildRequires: R-parallel BuildRequires: R-CRAN-shiny BuildRequires: R-CRAN-ggplot2 -BuildRequires: R-CRAN-microbenchmark +BuildRequires: R-stats Requires: R-CRAN-Rcpp Requires: R-parallel Requires: R-CRAN-shiny Requires: R-CRAN-ggplot2 -Requires: R-CRAN-microbenchmark +Requires: R-stats %description The routine twosample_test() in this package runs the two sample test -using various test statistic. The p values are found via permutation. The -routine twosample_power() allows the calculation of the power in various -cases, and plot_power() draws the corresponding power graphs. +using various test statistic. The p values are found via permutation or +large sample theory. The routine twosample_power() allows the calculation +of the power in various cases, and plot_power() draws the corresponding +power graphs. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-Rgof.spec b/specs/R-CRAN-Rgof.spec index d3bee03aa9..1c62c5f179 100644 --- a/specs/R-CRAN-Rgof.spec +++ b/specs/R-CRAN-Rgof.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname Rgof -%global packver 2.1.0 +%global packver 2.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.1.0 +Version: 2.1.1 Release: 1%{?dist}%{?buildtag} Summary: 1d Goodness of Fit Tests @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel -Requires: R-core +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 BuildRequires: R-CRAN-Rcpp BuildRequires: R-parallel BuildRequires: R-CRAN-ggplot2 diff --git a/specs/R-CRAN-SSBtools.spec b/specs/R-CRAN-SSBtools.spec index 0d5d04e00b..c591c9f573 100644 --- a/specs/R-CRAN-SSBtools.spec +++ b/specs/R-CRAN-SSBtools.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname SSBtools -%global packver 1.5.4 +%global packver 1.5.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.5.4 +Version: 1.5.5 Release: 1%{?dist}%{?buildtag} Summary: Statistics Norway's Miscellaneous Tools diff --git a/specs/R-CRAN-VDPO.spec b/specs/R-CRAN-VDPO.spec new file mode 100644 index 0000000000..223abd189b --- /dev/null +++ b/specs/R-CRAN-VDPO.spec @@ -0,0 +1,65 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname VDPO +%global packver 0.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Working with and Analyzing Functional Data of Varying Lengths + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch +BuildRequires: R-utils +BuildRequires: R-CRAN-Matrix +BuildRequires: R-CRAN-SOP +BuildRequires: R-splines +BuildRequires: R-stats +Requires: R-utils +Requires: R-CRAN-Matrix +Requires: R-CRAN-SOP +Requires: R-splines +Requires: R-stats + +%description +Comprehensive set of tools for analyzing and manipulating functional data +with non-uniform lengths. This package addresses two common scenarios in +functional data analysis: Variable Domain Data, where the observation +domain differs across samples, and Partially Observed Data, where +observations are incomplete over the domain of interest. 'VDPO' enhances +the flexibility and applicability of functional data analysis in 'R'. See +Amaro et al. (2024) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-Xcertainty.spec b/specs/R-CRAN-Xcertainty.spec new file mode 100644 index 0000000000..f1a19e9d53 --- /dev/null +++ b/specs/R-CRAN-Xcertainty.spec @@ -0,0 +1,62 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname Xcertainty +%global packver 1.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: Estimating Lengths and Uncertainty from Photogrammetric Imagery + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.0.2 +Requires: R-core >= 3.0.2 +BuildArch: noarch +BuildRequires: R-CRAN-nimble +BuildRequires: R-CRAN-tidyr +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-coda +Requires: R-CRAN-nimble +Requires: R-CRAN-tidyr +Requires: R-CRAN-dplyr +Requires: R-CRAN-coda + +%description +Implementation of Bayesian models for estimating object lengths and +morphological relationships between object lengths using photographic data +collected from drones. The Bayesian model is described in "Bayesian +approach for predicting photogrammetric uncertainty in morphometric +measurements derived from drones" (Bierlich et al., 2021, +). + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-amap.spec b/specs/R-CRAN-amap.spec index d5986d9bd7..5cc3f5215b 100644 --- a/specs/R-CRAN-amap.spec +++ b/specs/R-CRAN-amap.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname amap -%global packver 0.8-19.1 +%global packver 0.8-20 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.8.19.1 +Version: 0.8.20 Release: 1%{?dist}%{?buildtag} Summary: Another Multidimensional Analysis Package diff --git a/specs/R-CRAN-cTMed.spec b/specs/R-CRAN-cTMed.spec new file mode 100644 index 0000000000..b556dfd4c6 --- /dev/null +++ b/specs/R-CRAN-cTMed.spec @@ -0,0 +1,64 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname cTMed +%global packver 1.0.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.1 +Release: 1%{?dist}%{?buildtag} +Summary: Continuous Time Mediation + +License: GPL (>= 3) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildRequires: R-CRAN-Rcpp +BuildRequires: R-CRAN-numDeriv +BuildRequires: R-parallel +BuildRequires: R-CRAN-ctsem +BuildRequires: R-CRAN-simStateSpace +BuildRequires: R-CRAN-RcppArmadillo +Requires: R-CRAN-Rcpp +Requires: R-CRAN-numDeriv +Requires: R-parallel +Requires: R-CRAN-ctsem +Requires: R-CRAN-simStateSpace + +%description +Calculates standard errors and confidence intervals for effects in +continuous-time mediation models. This package extends the work of Deboeck +and Preacher (2015) and Ryan and +Hamaker (2021) by providing methods to +generate standard errors and confidence intervals for the total, direct, +and indirect effects in these models. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-caroline.spec b/specs/R-CRAN-caroline.spec index 2b14ece6f2..69b42dd100 100644 --- a/specs/R-CRAN-caroline.spec +++ b/specs/R-CRAN-caroline.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname caroline -%global packver 0.9.2 +%global packver 0.9.9 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.9.2 +Version: 0.9.9 Release: 1%{?dist}%{?buildtag} Summary: A Collection of Database, Data Structure, Visualization, and Utility Functions for R @@ -23,13 +23,14 @@ Requires: R-methods %description The caroline R library contains dozens of functions useful for: database migration (dbWriteTable2), database style joins & aggregation (nerge, -groupBy & bestBy), data structure conversion (nv, tab2df), legend table -making (sstable & leghead), plot annotation (labsegs & mvlabs), data -visualization (pies, sparge, & raPlot), character string manipulation (m & -pad), file I/O (write.delim), batch scripting and more. The package's -greatest contributions lie in the database style merge, aggregation and -interface functions as well as in it's extensive use and propagation of -row, column and vector names in most functions. +groupBy, & bestBy), data structure conversion (nv, tab2df), legend table +making (sstable & leghead), automatic legend positioning for scatter and +box plots (), plot annotation (labsegs & mvlabs), data visualization +(pies, sparge, confound.grid & raPlot), character string manipulation (m & +pad), file I/O (write.delim), batch scripting, data exploration, and more. +The package's greatest contributions lie in the database style merge, +aggregation and interface functions as well as in it's extensive use and +propagation of row, column and vector names in most functions. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-dataCompare.spec b/specs/R-CRAN-dataCompare.spec new file mode 100644 index 0000000000..1637e46421 --- /dev/null +++ b/specs/R-CRAN-dataCompare.spec @@ -0,0 +1,97 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname dataCompare +%global packver 1.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: A 'shiny' App to Compare Two Data Frames + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch +BuildRequires: R-CRAN-arsenal +BuildRequires: R-CRAN-config +BuildRequires: R-CRAN-data.table +BuildRequires: R-CRAN-devtools +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-DT +BuildRequires: R-CRAN-golem +BuildRequires: R-CRAN-htmltools +BuildRequires: R-CRAN-lubridate +BuildRequires: R-CRAN-magrittr +BuildRequires: R-CRAN-pins +BuildRequires: R-CRAN-shiny +BuildRequires: R-CRAN-shinydashboard +BuildRequires: R-CRAN-shinydashboardPlus +BuildRequires: R-CRAN-shinyjs +BuildRequires: R-CRAN-shinyWidgets +BuildRequires: R-CRAN-skimr +BuildRequires: R-tools +BuildRequires: R-utils +BuildRequires: R-CRAN-vroom +Requires: R-CRAN-arsenal +Requires: R-CRAN-config +Requires: R-CRAN-data.table +Requires: R-CRAN-devtools +Requires: R-CRAN-dplyr +Requires: R-CRAN-DT +Requires: R-CRAN-golem +Requires: R-CRAN-htmltools +Requires: R-CRAN-lubridate +Requires: R-CRAN-magrittr +Requires: R-CRAN-pins +Requires: R-CRAN-shiny +Requires: R-CRAN-shinydashboard +Requires: R-CRAN-shinydashboardPlus +Requires: R-CRAN-shinyjs +Requires: R-CRAN-shinyWidgets +Requires: R-CRAN-skimr +Requires: R-tools +Requires: R-utils +Requires: R-CRAN-vroom + +%description +A tool developed with the 'Golem' framework which provides an easier way +to check cells differences between two data frames. The user provides two +data frames for comparison, selects IDs variables identifying each row of +input data, then clicks a button to perform the comparison. Several 'R' +package functions are used to describe the data and perform the comparison +in the server of the application. The main ones are comparedf() from +'arsenal' and skim() from 'skimr'. For more details see the description of +comparedf() from the 'arsenal' package and that of skim() from the 'skimr' +package. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-diceplot.spec b/specs/R-CRAN-diceplot.spec index e882bf6649..35ee43d21b 100644 --- a/specs/R-CRAN-diceplot.spec +++ b/specs/R-CRAN-diceplot.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname diceplot -%global packver 0.1.0 +%global packver 0.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.1.1 Release: 1%{?dist}%{?buildtag} Summary: High Dimensional Categorical Data Visualization diff --git a/specs/R-CRAN-drat.spec b/specs/R-CRAN-drat.spec index 3cb8840456..29a13cb8e4 100644 --- a/specs/R-CRAN-drat.spec +++ b/specs/R-CRAN-drat.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname drat -%global packver 0.2.4 +%global packver 0.2.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.4 +Version: 0.2.5 Release: 1%{?dist}%{?buildtag} Summary: 'Drat' R Archive Template diff --git a/specs/R-CRAN-dtrackr.spec b/specs/R-CRAN-dtrackr.spec index cb2ea3710a..18192e4458 100644 --- a/specs/R-CRAN-dtrackr.spec +++ b/specs/R-CRAN-dtrackr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname dtrackr -%global packver 0.4.4 +%global packver 0.4.6 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.4.4 +Version: 0.4.6 Release: 1%{?dist}%{?buildtag} Summary: Track your Data Pipelines @@ -33,6 +33,7 @@ BuildRequires: R-CRAN-purrr BuildRequires: R-CRAN-base64enc BuildRequires: R-CRAN-pdftools BuildRequires: R-CRAN-png +BuildRequires: R-CRAN-lifecycle Requires: R-CRAN-dplyr >= 1.1.0 Requires: R-CRAN-glue Requires: R-CRAN-htmltools @@ -49,6 +50,7 @@ Requires: R-CRAN-purrr Requires: R-CRAN-base64enc Requires: R-CRAN-pdftools Requires: R-CRAN-png +Requires: R-CRAN-lifecycle %description Track and document 'dplyr' data pipelines. As you filter, mutate, and join diff --git a/specs/R-CRAN-evenBreak.spec b/specs/R-CRAN-evenBreak.spec new file mode 100644 index 0000000000..5612a1d9fd --- /dev/null +++ b/specs/R-CRAN-evenBreak.spec @@ -0,0 +1,74 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname evenBreak +%global packver 1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0 +Release: 1%{?dist}%{?buildtag} +Summary: A Posteriori Probs of Suits Breaking Evenly Across Four Hands + +License: GPL (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.2.0 +Requires: R-core >= 4.2.0 +BuildArch: noarch +BuildRequires: R-CRAN-combinat +BuildRequires: R-graphics +BuildRequires: R-stats +BuildRequires: R-utils +Requires: R-CRAN-combinat +Requires: R-graphics +Requires: R-stats +Requires: R-utils + +%description +We quantitatively evaluated the assertion that says if one suit is found +to be evenly distributed among the 4 players, the rest of the suits are +more likely to be evenly distributed. Our mathematical analyses show that, +if one suit is found to be evenly distributed, then a second suit has a +slightly elevated probability (ranging between 10%% to 15%%) of being evenly +distributed. If two suits are found to be evenly distributed, then a third +suit has a substantially elevated probability (ranging between 30%% to 50%%) +of being evenly distributed.This package refers to methods and authentic +data from Ely Culbertson , +Gregory Stoll , and +details of performing the probability calculations from Jeremy L. Martin +, Emile Borel and +Andre Cheron (1954) "The Mathematical Theory of Bridge",Antonio Vivaldi +and Gianni Barracho (2001, ISBN:0 7134 8663 5) "Probabilities and +Alternatives in Bridge", Ken Monzingo (2005) "Hand and Suit Patterns" +Ken +Monzingo (2005) "Hand and Suit Patterns" +. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-greenfeedr.spec b/specs/R-CRAN-greenfeedr.spec new file mode 100644 index 0000000000..8c36a4554d --- /dev/null +++ b/specs/R-CRAN-greenfeedr.spec @@ -0,0 +1,81 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname greenfeedr +%global packver 1.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: Process and Report 'GreenFeed' Data + +License: GPL (>= 3) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 2.10 +Requires: R-core >= 2.10 +BuildArch: noarch +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-httr +BuildRequires: R-CRAN-lubridate +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-readr +BuildRequires: R-CRAN-readxl +BuildRequires: R-CRAN-rmarkdown +BuildRequires: R-stats +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-tidyr +Requires: R-CRAN-dplyr +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-httr +Requires: R-CRAN-lubridate +Requires: R-CRAN-purrr +Requires: R-CRAN-readr +Requires: R-CRAN-readxl +Requires: R-CRAN-rmarkdown +Requires: R-stats +Requires: R-CRAN-stringr +Requires: R-CRAN-tidyr + +%description +Downloading, Processing, and Reporting 'GreenFeed' Data. The 'GreenFeed' +system generates substantial amounts of daily data, which can be +overwhelming for users. This package facilitates data retrieval and +reporting from the 'GreenFeed' system using a streamlined process. Users +can retrieve data from the 'C-Lock Inc.' system via an 'API' using the +get_gfdata() function. Additionally, the report_gfdata() function allows +users to generate both daily and final reports from 'GreenFeed' data. The +process_gfdata() function further processes this data for analysis. For +pellet intake processing and visit checks, the package also provides the +pellin() and viseat() functions, ensuring a comprehensive toolset for +managing and analyzing 'GreenFeed' data. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-jagshelper.spec b/specs/R-CRAN-jagshelper.spec index b0385249ea..6812d677f0 100644 --- a/specs/R-CRAN-jagshelper.spec +++ b/specs/R-CRAN-jagshelper.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname jagshelper -%global packver 0.3.2 +%global packver 0.4.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.3.2 +Version: 0.4.0 Release: 1%{?dist}%{?buildtag} Summary: Extracting and Visualizing Output from 'jagsUI' diff --git a/specs/R-CRAN-lzstring.spec b/specs/R-CRAN-lzstring.spec index 980a7a53d2..df3cf9b641 100644 --- a/specs/R-CRAN-lzstring.spec +++ b/specs/R-CRAN-lzstring.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname lzstring -%global packver 0.1.2 +%global packver 0.1.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.2 +Version: 0.1.3 Release: 1%{?dist}%{?buildtag} Summary: Wrapper for 'lz-string' 'C++' Library diff --git a/specs/R-CRAN-mapme.biodiversity.spec b/specs/R-CRAN-mapme.biodiversity.spec index d136f54823..6ac8e8b9cc 100644 --- a/specs/R-CRAN-mapme.biodiversity.spec +++ b/specs/R-CRAN-mapme.biodiversity.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname mapme.biodiversity -%global packver 0.9.2 +%global packver 0.9.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.9.2 +Version: 0.9.3 Release: 1%{?dist}%{?buildtag} Summary: Efficient Monitoring of Global Biodiversity Portfolios diff --git a/specs/R-CRAN-mpathr.spec b/specs/R-CRAN-mpathr.spec new file mode 100644 index 0000000000..adc402f727 --- /dev/null +++ b/specs/R-CRAN-mpathr.spec @@ -0,0 +1,73 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname mpathr +%global packver 1.0.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.1 +Release: 1%{?dist}%{?buildtag} +Summary: Easily Handling Data from the ‘m-Path’ Platform + +License: GPL (>= 3) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.0.0 +Requires: R-core >= 4.0.0 +BuildArch: noarch +BuildRequires: R-CRAN-cli +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-jsonlite +BuildRequires: R-CRAN-lifecycle +BuildRequires: R-CRAN-lubridate +BuildRequires: R-CRAN-readr +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-tidyr +Requires: R-CRAN-cli +Requires: R-CRAN-dplyr +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-jsonlite +Requires: R-CRAN-lifecycle +Requires: R-CRAN-lubridate +Requires: R-CRAN-readr +Requires: R-CRAN-rlang +Requires: R-CRAN-tidyr + +%description +Provides tools for importing and cleaning Experience Sampling Method (ESM) +data collected via the 'm-Path' platform. The goal is to provide with a +few utility functions to be able to read and perform some common +operations in ESM data collected through the 'm-Path' platform +(). Functions include raw data handling, +format standardization, and basic data checks, as well as to calculate the +response rate in data from ESM studies. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-mrfse.spec b/specs/R-CRAN-mrfse.spec index b81c68d3ae..b20f49ab0b 100644 --- a/specs/R-CRAN-mrfse.spec +++ b/specs/R-CRAN-mrfse.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname mrfse -%global packver 0.4.1 +%global packver 0.4.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.4.1 +Version: 0.4.2 Release: 1%{?dist}%{?buildtag} Summary: Markov Random Field Structure Estimator diff --git a/specs/R-CRAN-myClim.spec b/specs/R-CRAN-myClim.spec index a2d37911d3..64e0004170 100644 --- a/specs/R-CRAN-myClim.spec +++ b/specs/R-CRAN-myClim.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname myClim -%global packver 1.2.0 +%global packver 1.3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2.0 +Version: 1.3.0 Release: 1%{?dist}%{?buildtag} Summary: Microclimatic Data Processing diff --git a/specs/R-CRAN-openrouteservice.spec b/specs/R-CRAN-openrouteservice.spec index de52ef3546..bb2a38fa0d 100644 --- a/specs/R-CRAN-openrouteservice.spec +++ b/specs/R-CRAN-openrouteservice.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname openrouteservice -%global packver 0.5.3 +%global packver 0.6.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.5.3 +Version: 0.6.1 Release: 1%{?dist}%{?buildtag} Summary: An 'openrouteservice' API Client diff --git a/specs/R-CRAN-parmigene.spec b/specs/R-CRAN-parmigene.spec index 7e96ea2974..88c9a431de 100644 --- a/specs/R-CRAN-parmigene.spec +++ b/specs/R-CRAN-parmigene.spec @@ -1,12 +1,13 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname parmigene -%global packver 1.1.0 +%global packver 1.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.0 +Version: 1.1.1 Release: 1%{?dist}%{?buildtag} -Summary: Parallel Mutual Information Estimation for Gene NetworkReconstruction +Summary: Parallel Mutual Information Estimation for Gene Network Reconstruction License: AGPL-3 URL: https://cran.r-project.org/package=%{packname} @@ -25,9 +26,15 @@ of gene regulatory networks (Sales et al, 2011 %prep %setup -q -c -n %{packname} +# fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build @@ -37,6 +44,7 @@ mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files diff --git a/specs/R-CRAN-patchDVI.spec b/specs/R-CRAN-patchDVI.spec index 1d400c24a5..911111fedb 100644 --- a/specs/R-CRAN-patchDVI.spec +++ b/specs/R-CRAN-patchDVI.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname patchDVI -%global packver 1.11.0 +%global packver 1.11.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.11.0 +Version: 1.11.3 Release: 1%{?dist}%{?buildtag} Summary: Package to Patch '.dvi' or '.synctex' Files @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.3.0 -Requires: R-core >= 3.3.0 +BuildRequires: R-devel >= 3.4.0 +Requires: R-core >= 3.4.0 BuildRequires: R-utils BuildRequires: R-tools BuildRequires: R-CRAN-RmdConcord diff --git a/specs/R-CRAN-pii.spec b/specs/R-CRAN-pii.spec new file mode 100644 index 0000000000..9f7c2d936f --- /dev/null +++ b/specs/R-CRAN-pii.spec @@ -0,0 +1,58 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname pii +%global packver 1.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: Search Data Frames for Personally Identifiable Information + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 2.10 +Requires: R-core >= 2.10 +BuildArch: noarch +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-uuid +BuildRequires: R-utils +Requires: R-CRAN-dplyr +Requires: R-CRAN-stringr +Requires: R-CRAN-uuid +Requires: R-utils + +%description +Check a data frame for personal information, including names, location, +disability status, and geo-coordinates. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-poissoned.spec b/specs/R-CRAN-poissoned.spec new file mode 100644 index 0000000000..f3bd3c23aa --- /dev/null +++ b/specs/R-CRAN-poissoned.spec @@ -0,0 +1,52 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname poissoned +%global packver 0.1.3 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.3 +Release: 1%{?dist}%{?buildtag} +Summary: Poisson Disk Sampling in 2D and 3D + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core + +%description +Poisson disk sampling is a method of generating blue noise sample patterns +where all samples are at least a specified distance apart. Poisson samples +may be generated in two or three dimensions with this package. The +algorithm used is an implementation of Bridson's "Fast Poisson disk +sampling in arbitrary dimensions" . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-protti.spec b/specs/R-CRAN-protti.spec index 0bc0f9b39f..ab9567f18e 100644 --- a/specs/R-CRAN-protti.spec +++ b/specs/R-CRAN-protti.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname protti -%global packver 0.9.0 +%global packver 0.9.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.9.0 +Version: 0.9.1 Release: 1%{?dist}%{?buildtag} Summary: Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools diff --git a/specs/R-CRAN-redatam.spec b/specs/R-CRAN-redatam.spec new file mode 100644 index 0000000000..7351bca191 --- /dev/null +++ b/specs/R-CRAN-redatam.spec @@ -0,0 +1,58 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname redatam +%global packver 2.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 2.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: Import 'REDATAM' Files + +License: Apache License (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildRequires: R-CRAN-data.table +BuildRequires: R-CRAN-janitor +BuildRequires: R-CRAN-stringi +BuildRequires: R-CRAN-cpp11 +Requires: R-CRAN-data.table +Requires: R-CRAN-janitor +Requires: R-CRAN-stringi + +%description +Import 'REDATAM' files into R. 'REDATAM' is a software for the +manipulation of microdata from censuses and surveys. This package provides +functions to import 'REDATAM' files into R. It is based on De Grande +(2016) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-rice.spec b/specs/R-CRAN-rice.spec index 3e9a3af047..5b6ee4a2e3 100644 --- a/specs/R-CRAN-rice.spec +++ b/specs/R-CRAN-rice.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname rice -%global packver 0.2.0 +%global packver 0.3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.0 +Version: 0.3.0 Release: 1%{?dist}%{?buildtag} Summary: Radiocarbon Equations diff --git a/specs/R-CRAN-segtest.spec b/specs/R-CRAN-segtest.spec new file mode 100644 index 0000000000..eac3a6c053 --- /dev/null +++ b/specs/R-CRAN-segtest.spec @@ -0,0 +1,70 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname segtest +%global packver 1.0.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.1 +Release: 1%{?dist}%{?buildtag} +Summary: Tests for Segregation Distortion in Polyploids + +License: GPL (>= 3) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.4.0 +Requires: R-core >= 3.4.0 +BuildRequires: R-CRAN-doFuture +BuildRequires: R-CRAN-doRNG +BuildRequires: R-CRAN-foreach +BuildRequires: R-CRAN-future +BuildRequires: R-CRAN-iterators +BuildRequires: R-CRAN-Rcpp +BuildRequires: R-CRAN-updog +BuildRequires: R-CRAN-RcppArmadillo +Requires: R-CRAN-doFuture +Requires: R-CRAN-doRNG +Requires: R-CRAN-foreach +Requires: R-CRAN-future +Requires: R-CRAN-iterators +Requires: R-CRAN-Rcpp +Requires: R-CRAN-updog + +%description +Provides a suite of tests for segregation distortion in F1 polyploid +populations (for now, just tetraploids). This is under different +assumptions of meiosis. Details of these methods are described in Gerard +et al. (2024) . This material is based upon +work supported by the National Science Foundation under Grant No. 2132247. +The opinions, findings, and conclusions or recommendations expressed are +those of the author and do not necessarily reflect the views of the +National Science Foundation. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-semptools.spec b/specs/R-CRAN-semptools.spec index 9738ebbb01..cd95006e59 100644 --- a/specs/R-CRAN-semptools.spec +++ b/specs/R-CRAN-semptools.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname semptools -%global packver 0.2.10 +%global packver 0.3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.10 +Version: 0.3.0 Release: 1%{?dist}%{?buildtag} Summary: Customizing Structural Equation Modelling Plots diff --git a/specs/R-CRAN-spqdep.spec b/specs/R-CRAN-spqdep.spec new file mode 100644 index 0000000000..95d9af2eee --- /dev/null +++ b/specs/R-CRAN-spqdep.spec @@ -0,0 +1,91 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname spqdep +%global packver 0.1.3.3 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.3.3 +Release: 1%{?dist}%{?buildtag} +Summary: Testing for Spatial Independence of Qualitative Data in Cross Section + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5 +Requires: R-core >= 3.5 +BuildArch: noarch +BuildRequires: R-CRAN-gtools >= 3.8.2 +BuildRequires: R-CRAN-ggplot2 >= 3.5.1 +BuildRequires: R-methods >= 3.5 +BuildRequires: R-stats >= 3.5 +BuildRequires: R-CRAN-gridExtra >= 2.3 +BuildRequires: R-CRAN-magrittr >= 1.5 +BuildRequires: R-CRAN-sp >= 1.4.5 +BuildRequires: R-CRAN-igraph >= 1.2.5 +BuildRequires: R-CRAN-Matrix >= 1.2.18 +BuildRequires: R-CRAN-spatialreg >= 1.1.8 +BuildRequires: R-CRAN-spdep >= 1.1.3 +BuildRequires: R-CRAN-tidyr >= 1.1.2 +BuildRequires: R-CRAN-dplyr >= 1.0.2 +BuildRequires: R-CRAN-sf >= 0.9.3 +BuildRequires: R-CRAN-broom >= 0.7.2 +BuildRequires: R-CRAN-purrr >= 0.3.4 +BuildRequires: R-CRAN-gt >= 0.11.1 +BuildRequires: R-CRAN-rsample >= 0.0.8 +BuildRequires: R-CRAN-rgeoda >= 0.0.10.4 +Requires: R-CRAN-gtools >= 3.8.2 +Requires: R-CRAN-ggplot2 >= 3.5.1 +Requires: R-methods >= 3.5 +Requires: R-stats >= 3.5 +Requires: R-CRAN-gridExtra >= 2.3 +Requires: R-CRAN-magrittr >= 1.5 +Requires: R-CRAN-sp >= 1.4.5 +Requires: R-CRAN-igraph >= 1.2.5 +Requires: R-CRAN-Matrix >= 1.2.18 +Requires: R-CRAN-spatialreg >= 1.1.8 +Requires: R-CRAN-spdep >= 1.1.3 +Requires: R-CRAN-tidyr >= 1.1.2 +Requires: R-CRAN-dplyr >= 1.0.2 +Requires: R-CRAN-sf >= 0.9.3 +Requires: R-CRAN-broom >= 0.7.2 +Requires: R-CRAN-purrr >= 0.3.4 +Requires: R-CRAN-gt >= 0.11.1 +Requires: R-CRAN-rsample >= 0.0.8 +Requires: R-CRAN-rgeoda >= 0.0.10.4 + +%description +Testing for Spatial Dependence of Qualitative Data in Cross Section. The +list of functions includes join-count tests, Q test, spatial scan test, +similarity test and spatial runs test. The methodology of these models can +be found in and +. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-ssdtools.spec b/specs/R-CRAN-ssdtools.spec index 24927b06af..f64ee0aebe 100644 --- a/specs/R-CRAN-ssdtools.spec +++ b/specs/R-CRAN-ssdtools.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ssdtools -%global packver 2.0.0 +%global packver 2.1.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.0 +Version: 2.1.0 Release: 1%{?dist}%{?buildtag} Summary: Species Sensitivity Distributions diff --git a/specs/R-CRAN-statforbiology.spec b/specs/R-CRAN-statforbiology.spec new file mode 100644 index 0000000000..bdfca640a9 --- /dev/null +++ b/specs/R-CRAN-statforbiology.spec @@ -0,0 +1,84 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname statforbiology +%global packver 0.9.9 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.9.9 +Release: 1%{?dist}%{?buildtag} +Summary: Tools for Data Analyses in Biology + +License: GPL-3 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5 +Requires: R-core >= 3.5 +BuildArch: noarch +BuildRequires: R-CRAN-drc +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-tidyr +BuildRequires: R-CRAN-car +BuildRequires: R-CRAN-nlme +BuildRequires: R-CRAN-emmeans +BuildRequires: R-methods +BuildRequires: R-CRAN-MASS +BuildRequires: R-stats +BuildRequires: R-CRAN-drcte +BuildRequires: R-CRAN-multcomp +BuildRequires: R-utils +BuildRequires: R-CRAN-multcompView +Requires: R-CRAN-drc +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-tidyr +Requires: R-CRAN-car +Requires: R-CRAN-nlme +Requires: R-CRAN-emmeans +Requires: R-methods +Requires: R-CRAN-MASS +Requires: R-stats +Requires: R-CRAN-drcte +Requires: R-CRAN-multcomp +Requires: R-utils +Requires: R-CRAN-multcompView + +%description +Contains several tools for nonlinear regression analyses and general data +analysis in biology and agriculture. Contains also datasets for practicing +and teaching purposes. Supports the blog: Onofri (2024) "Fixing the bridge +between biologists and statisticians" and +the book: Onofri (2024) "Experimental Methods in Agriculture" +. The blog is a collection +of short articles aimed at improving the efficiency of communication +between biologists and statisticians, as pointed out in Kozak (2016) +, spreading a better awareness of the +potential usefulness, beauty and limitations of biostatistic. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-topiclabels.spec b/specs/R-CRAN-topiclabels.spec index 6e1d725d1c..668aee9a1f 100644 --- a/specs/R-CRAN-topiclabels.spec +++ b/specs/R-CRAN-topiclabels.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname topiclabels -%global packver 0.1.0 +%global packver 0.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.2.0 Release: 1%{?dist}%{?buildtag} Summary: Automated Topic Labeling with Language Models diff --git a/specs/R-CRAN-tower.spec b/specs/R-CRAN-tower.spec new file mode 100644 index 0000000000..c43b1415fb --- /dev/null +++ b/specs/R-CRAN-tower.spec @@ -0,0 +1,65 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname tower +%global packver 0.2.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.2.0 +Release: 1%{?dist}%{?buildtag} +Summary: Easy Middle Ware Library for 'shiny' + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildArch: noarch +BuildRequires: R-CRAN-glue +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-curl +BuildRequires: R-CRAN-jsonlite +BuildRequires: R-CRAN-rlang +Requires: R-CRAN-glue +Requires: R-CRAN-purrr +Requires: R-CRAN-stringr +Requires: R-CRAN-curl +Requires: R-CRAN-jsonlite +Requires: R-CRAN-rlang + +%description +The best way to implement middle ware for 'shiny' Applications. 'tower' is +designed to make implementing behavior on top of 'shiny' easy with a +layering model for incoming HTTP requests and server sessions. 'tower' is +a very minimal package with little overhead, it is mainly meant for other +package developers to implement new behavior. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-tranSurv.spec b/specs/R-CRAN-tranSurv.spec deleted file mode 100644 index 560e650fa8..0000000000 --- a/specs/R-CRAN-tranSurv.spec +++ /dev/null @@ -1,63 +0,0 @@ -%global __brp_check_rpaths %{nil} -%global packname tranSurv -%global packver 1.2.2 -%global rlibdir /usr/local/lib/R/library - -Name: R-CRAN-%{packname} -Version: 1.2.2 -Release: 1%{?dist}%{?buildtag} -Summary: Transformation Model Based Estimation of Survival and Regression Under Dependent Truncation and Independent Censoring - -License: GPL (>= 3) -URL: https://cran.r-project.org/package=%{packname} -Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz - - -BuildRequires: R-devel -Requires: R-core -BuildRequires: R-CRAN-rootSolve -BuildRequires: R-CRAN-truncSP -BuildRequires: R-CRAN-survival -BuildRequires: R-CRAN-SQUAREM -BuildRequires: R-methods -Requires: R-CRAN-rootSolve -Requires: R-CRAN-truncSP -Requires: R-CRAN-survival -Requires: R-CRAN-SQUAREM -Requires: R-methods - -%description -A latent, quasi-independent truncation time is assumed to be linked with -the observed dependent truncation time, the event time, and an unknown -transformation parameter via a structural transformation model. The -transformation parameter is chosen to minimize the conditional Kendall's -tau (Martin and Betensky, 2005) or the -regression coefficient estimates (Jones and Crowley, 1992) -. The marginal distribution for the truncation time -and the event time are completely left unspecified. The methodology is -applied to survival curve estimation and regression analysis. - -%prep -%setup -q -c -n %{packname} - -# fix end of executable files -find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; -# prevent binary stripping -[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ - sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true -# don't allow local prefix in executable scripts -find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; - -%build - -%install - -mkdir -p %{buildroot}%{rlibdir} -%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} -test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) -rm -f %{buildroot}%{rlibdir}/R.css -# remove buildroot from installed files -find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; - -%files -%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-yamlet.spec b/specs/R-CRAN-yamlet.spec index e0d566c667..8a4e347960 100644 --- a/specs/R-CRAN-yamlet.spec +++ b/specs/R-CRAN-yamlet.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname yamlet -%global packver 1.1.3 +%global packver 1.1.4 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.3 +Version: 1.1.4 Release: 1%{?dist}%{?buildtag} Summary: Versatile Curation of Table Metadata