diff --git a/specs/R-CRAN-CDsampling.spec b/specs/R-CRAN-CDsampling.spec index 1548081e4..a0111c445 100644 --- a/specs/R-CRAN-CDsampling.spec +++ b/specs/R-CRAN-CDsampling.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname CDsampling -%global packver 0.1.1 +%global packver 0.1.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.1 +Version: 0.1.2 Release: 1%{?dist}%{?buildtag} Summary: 'CDsampling': Constraint Sampling in Paid Research Studies diff --git a/specs/R-CRAN-CSTE.spec b/specs/R-CRAN-CSTE.spec new file mode 100644 index 000000000..d5b443d9c --- /dev/null +++ b/specs/R-CRAN-CSTE.spec @@ -0,0 +1,67 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname CSTE +%global packver 3.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 3.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: Covariate Specific Treatment Effect (CSTE) Curve + +License: GPL (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildRequires: R-CRAN-Rcpp >= 1.0.4 +BuildRequires: R-CRAN-fda +BuildRequires: R-splines +BuildRequires: R-CRAN-survival +BuildRequires: R-CRAN-locpol +BuildRequires: R-CRAN-dfoptim +Requires: R-CRAN-Rcpp >= 1.0.4 +Requires: R-CRAN-fda +Requires: R-splines +Requires: R-CRAN-survival +Requires: R-CRAN-locpol +Requires: R-CRAN-dfoptim + +%description +A uniform statistical inferential tool in making individualized treatment +decisions, which implements the methods of Ma et al. +(2017) and Guo et al. +(2021). It uses a flexible +semiparametric modeling strategy for heterogeneous treatment effect +estimation in high-dimensional settings and can gave valid confidence +bands. Based on it, one can find the subgroups of patients that benefit +from each treatment, thereby making individualized treatment selection. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-EFAfactors.spec b/specs/R-CRAN-EFAfactors.spec index 07d3aae99..d752ce82b 100644 --- a/specs/R-CRAN-EFAfactors.spec +++ b/specs/R-CRAN-EFAfactors.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname EFAfactors -%global packver 1.1.0 +%global packver 1.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.0 +Version: 1.1.1 Release: 1%{?dist}%{?buildtag} Summary: Determining the Number of Factors in Exploratory Factor Analysis diff --git a/specs/R-CRAN-HMMRel.spec b/specs/R-CRAN-HMMRel.spec index 6f817cd89..157c1bef1 100644 --- a/specs/R-CRAN-HMMRel.spec +++ b/specs/R-CRAN-HMMRel.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname HMMRel -%global packver 0.1.0 +%global packver 0.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.1.1 Release: 1%{?dist}%{?buildtag} Summary: Hidden Markov Models for Reliability and Maintenance @@ -29,9 +29,8 @@ based on the Baum-Welch algorithm. Classical structures such as K-out-of-N systems and Shock models are illustrated. Finally, the maintenance of the system is considered in the HMM context and two functions for new preventive maintenance strategies are considered. Maintenance efficiency -is measured in terms of expected cost. Maintenance efficiency is measured -in terms of expected cost. Methods are described in Gamiz, Limnios, and -Segovia-Garcia (2023) . +is measured in terms of expected cost. Methods are described in Gamiz, +Limnios, and Segovia-Garcia (2023) . %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-HelpersMG.spec b/specs/R-CRAN-HelpersMG.spec index 7e31eaa30..e4275afc2 100644 --- a/specs/R-CRAN-HelpersMG.spec +++ b/specs/R-CRAN-HelpersMG.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname HelpersMG -%global packver 6.2 +%global packver 6.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 6.2 +Version: 6.3 Release: 1%{?dist}%{?buildtag} Summary: Tools for Environmental Analyses, Ecotoxicology and Various R Functions diff --git a/specs/R-CRAN-LFM.spec b/specs/R-CRAN-LFM.spec new file mode 100644 index 000000000..6624267ea --- /dev/null +++ b/specs/R-CRAN-LFM.spec @@ -0,0 +1,70 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname LFM +%global packver 0.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Laplace Factor Model Analysis and Evaluation + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch +BuildRequires: R-stats +BuildRequires: R-CRAN-FarmTest +BuildRequires: R-CRAN-MASS +BuildRequires: R-CRAN-SOPC +BuildRequires: R-CRAN-LaplacesDemon +BuildRequires: R-CRAN-matrixcalc +BuildRequires: R-CRAN-relliptical +Requires: R-stats +Requires: R-CRAN-FarmTest +Requires: R-CRAN-MASS +Requires: R-CRAN-SOPC +Requires: R-CRAN-LaplacesDemon +Requires: R-CRAN-matrixcalc +Requires: R-CRAN-relliptical + +%description +Enables the generation of Laplace factor models across diverse Laplace +distributions and facilitates the application of Sparse Online Principal +Component (SOPC), Incremental Principal Component (IPC), Parallel +Principal Component (PPC), Sparse Approximate Principal Component (SAPC), +Standard Principal Component (SPC), and Farm Test methods to these models. +Evaluates the efficacy of these methods within the context of Laplace +factor models by scrutinizing parameter estimation accuracy, mean square +error, and the degree of sparsity. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-LST.spec b/specs/R-CRAN-LST.spec index 7eff69d68..24ef7d1c4 100644 --- a/specs/R-CRAN-LST.spec +++ b/specs/R-CRAN-LST.spec @@ -1,10 +1,11 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname LST -%global packver 1.1.0 +%global packver 2.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.0 +Version: 2.0.0 Release: 1%{?dist}%{?buildtag} Summary: Land Surface Temperature Retrieval for Landsat 8 @@ -16,8 +17,8 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildArch: noarch -BuildRequires: R-CRAN-raster -Requires: R-CRAN-raster +BuildRequires: R-CRAN-terra +Requires: R-CRAN-terra %description Calculates Land Surface Temperature from Landsat band 10 and 11. Revision @@ -49,6 +50,8 @@ find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; diff --git a/specs/R-CRAN-LikertMakeR.spec b/specs/R-CRAN-LikertMakeR.spec index 28ec85905..4fb8df60e 100644 --- a/specs/R-CRAN-LikertMakeR.spec +++ b/specs/R-CRAN-LikertMakeR.spec @@ -1,13 +1,13 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname LikertMakeR -%global packver 0.3.0 +%global packver 0.4.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.3.0 +Version: 0.4.0 Release: 1%{?dist}%{?buildtag} -Summary: Synthesise and Correlate Rating-Scale Data +Summary: Synthesise and Correlate Likert Scale and Related Rating-Scale Data License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} @@ -25,11 +25,12 @@ Requires: R-CRAN-gtools Requires: R-CRAN-Rcpp %description -Synthesise rating-scale data with predefined first & second moments (mean -& standard deviation) and, optionally, correlate multiple vectors with -predefined correlation matrix. Also generate synthetic rating-scale data -with predefined Cronbach's Alpha, or generate rating-scale items from a -predefined scale. +Synthesise Likert scale and related rating-scale data with predefined +first and second moments (mean and standard deviation), and, optionally, +correlate multiple vectors using a predefined correlation matrix. +Additionally, generate synthetic rating-scale items with a predefined +Cronbach's Alpha, or create rating-scale items based on a predefined +summated scale. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-LongDat.spec b/specs/R-CRAN-LongDat.spec index 787afd44b..4d5d2d2fe 100644 --- a/specs/R-CRAN-LongDat.spec +++ b/specs/R-CRAN-LongDat.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname LongDat -%global packver 1.1.2 +%global packver 1.1.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.2 +Version: 1.1.3 Release: 1%{?dist}%{?buildtag} Summary: A Tool for 'Covariate'-Sensitive Longitudinal Analysis on 'omics' Data diff --git a/specs/R-CRAN-MXM.spec b/specs/R-CRAN-MXM.spec deleted file mode 100644 index 3a16623db..000000000 --- a/specs/R-CRAN-MXM.spec +++ /dev/null @@ -1,123 +0,0 @@ -%global __brp_check_rpaths %{nil} -%global __requires_exclude ^libmpi -%global packname MXM -%global packver 1.5.5 -%global rlibdir /usr/local/lib/R/library - -Name: R-CRAN-%{packname} -Version: 1.5.5 -Release: 1%{?dist}%{?buildtag} -Summary: Feature Selection (Including Multiple Solutions) and Bayesian Networks - -License: GPL-2 -URL: https://cran.r-project.org/package=%{packname} -Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz - - -BuildRequires: R-devel >= 4.0 -Requires: R-core >= 4.0 -BuildArch: noarch -BuildRequires: R-methods -BuildRequires: R-stats -BuildRequires: R-utils -BuildRequires: R-CRAN-survival -BuildRequires: R-CRAN-MASS -BuildRequires: R-graphics -BuildRequires: R-CRAN-ordinal -BuildRequires: R-CRAN-nnet -BuildRequires: R-CRAN-quantreg -BuildRequires: R-CRAN-lme4 -BuildRequires: R-CRAN-foreach -BuildRequires: R-CRAN-doParallel -BuildRequires: R-parallel -BuildRequires: R-CRAN-relations -BuildRequires: R-CRAN-Rfast -BuildRequires: R-CRAN-visNetwork -BuildRequires: R-CRAN-energy -BuildRequires: R-CRAN-geepack -BuildRequires: R-CRAN-knitr -BuildRequires: R-CRAN-dplyr -BuildRequires: R-CRAN-bigmemory -BuildRequires: R-CRAN-coxme -BuildRequires: R-CRAN-Rfast2 -BuildRequires: R-CRAN-Hmisc -Requires: R-methods -Requires: R-stats -Requires: R-utils -Requires: R-CRAN-survival -Requires: R-CRAN-MASS -Requires: R-graphics -Requires: R-CRAN-ordinal -Requires: R-CRAN-nnet -Requires: R-CRAN-quantreg -Requires: R-CRAN-lme4 -Requires: R-CRAN-foreach -Requires: R-CRAN-doParallel -Requires: R-parallel -Requires: R-CRAN-relations -Requires: R-CRAN-Rfast -Requires: R-CRAN-visNetwork -Requires: R-CRAN-energy -Requires: R-CRAN-geepack -Requires: R-CRAN-knitr -Requires: R-CRAN-dplyr -Requires: R-CRAN-bigmemory -Requires: R-CRAN-coxme -Requires: R-CRAN-Rfast2 -Requires: R-CRAN-Hmisc - -%description -Many feature selection methods for a wide range of response variables, -including minimal, statistically-equivalent and equally-predictive feature -subsets. Bayesian network algorithms and related functions are also -included. The package name 'MXM' stands for "Mens eX Machina", meaning -"Mind from the Machine" in Latin. References: a) Lagani, V. and Athineou, -G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). Feature -Selection with the R Package MXM: Discovering Statistically Equivalent -Feature Subsets. Journal of Statistical Software, 80(7). -. b) Tsagris, M., Lagani, V. and Tsamardinos, -I. (2018). Feature selection for high-dimensional temporal data. BMC -Bioinformatics, 19:17. . c) Tsagris, M., -Borboudakis, G., Lagani, V. and Tsamardinos, I. (2018). Constraint-based -causal discovery with mixed data. International Journal of Data Science -and Analytics, 6(1): 19-30. . d) Tsagris, -M., Papadovasilakis, Z., Lakiotaki, K. and Tsamardinos, I. (2018). -Efficient feature selection on gene expression data: Which algorithm to -use? BioRxiv. . e) Tsagris, M. (2019). Bayesian -Network Learning with the PC Algorithm: An Improved and Correct Variation. -Applied Artificial Intelligence, 33(2):101-123. -. f) Tsagris, M. and Tsamardinos, I. -(2019). Feature selection with the R package MXM. F1000Research 7: 1505. -. g) Borboudakis, G. and Tsamardinos, -I. (2019). Forward-Backward Selection with Early Dropping. Journal of -Machine Learning Research 20: 1-39. h) The gamma-OMP algorithm for feature -selection with application to gene expression data. IEEE/ACM Transactions -on Computational Biology and Bioinformatics 19(2): 1214-1224. -. - -%prep -%setup -q -c -n %{packname} - -# fix end of executable files -find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; -# prevent binary stripping -[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ - sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true -[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ - sed -i 's@-g0@@g' {} \; || true -# don't allow local prefix in executable scripts -find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; - -%build - -%install - -mkdir -p %{buildroot}%{rlibdir} -%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} -test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) -rm -f %{buildroot}%{rlibdir}/R.css -# remove buildroot from installed files -find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; - -%files -%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-metaumbrella.spec b/specs/R-CRAN-OutSeekR.spec similarity index 51% rename from specs/R-CRAN-metaumbrella.spec rename to specs/R-CRAN-OutSeekR.spec index f8d8daa2e..aa31d5d20 100644 --- a/specs/R-CRAN-metaumbrella.spec +++ b/specs/R-CRAN-OutSeekR.spec @@ -1,15 +1,15 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi -%global packname metaumbrella -%global packver 1.0.11 +%global packname OutSeekR +%global packver 1.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.11 +Version: 1.0.0 Release: 1%{?dist}%{?buildtag} -Summary: Umbrella Review Package for R +Summary: Statistical Approach to Outlier Detection in RNA-Seq and Related Data -License: GPL-3 +License: GPL-2 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz @@ -17,32 +17,22 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 2.10 Requires: R-core >= 2.10 BuildArch: noarch -BuildRequires: R-CRAN-meta -BuildRequires: R-CRAN-pwr -BuildRequires: R-CRAN-powerSurvEpi -BuildRequires: R-CRAN-readxl -BuildRequires: R-tcltk -BuildRequires: R-CRAN-withr -BuildRequires: R-CRAN-writexl -BuildRequires: R-CRAN-xtable -Requires: R-CRAN-meta -Requires: R-CRAN-pwr -Requires: R-CRAN-powerSurvEpi -Requires: R-CRAN-readxl -Requires: R-tcltk -Requires: R-CRAN-withr -Requires: R-CRAN-writexl -Requires: R-CRAN-xtable +BuildRequires: R-CRAN-future.apply +BuildRequires: R-CRAN-gamlss +BuildRequires: R-CRAN-gamlss.dist +BuildRequires: R-CRAN-lsa +BuildRequires: R-CRAN-truncnorm +Requires: R-CRAN-future.apply +Requires: R-CRAN-gamlss +Requires: R-CRAN-gamlss.dist +Requires: R-CRAN-lsa +Requires: R-CRAN-truncnorm %description -A comprehensive range of facilities to perform umbrella reviews with -stratification of the evidence in R. The package accomplishes this aim by -building on three core functions that: (i) automatically perform all -required calculations in an umbrella review (including but not limited to -meta-analyses), (ii) stratify evidence according to various classification -criteria, and (iii) generate a visual representation of the results. Note -that if you are not familiar with R, the core features of this package are -available from a web browser (). +An approach to outlier detection in RNA-seq and related data based on five +statistics. 'OutSeekR' implements an outlier test by comparing the +distributions of these statistics in observed data with those of simulated +null data. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-RRBoost.spec b/specs/R-CRAN-RRBoost.spec index ff5b9f64f..7b4ba5b12 100644 --- a/specs/R-CRAN-RRBoost.spec +++ b/specs/R-CRAN-RRBoost.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname RRBoost -%global packver 0.1 +%global packver 0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1 +Version: 0.2 Release: 1%{?dist}%{?buildtag} Summary: A Robust Boosting Algorithm @@ -20,19 +20,20 @@ BuildArch: noarch BuildRequires: R-stats BuildRequires: R-CRAN-rpart BuildRequires: R-CRAN-RobStatTM +BuildRequires: R-methods Requires: R-stats Requires: R-CRAN-rpart Requires: R-CRAN-RobStatTM +Requires: R-methods %description An implementation of robust boosting algorithms for regression in R. This includes the RRBoost method proposed in the paper "Robust Boosting for Regression Problems" (Ju X and Salibian-Barrera M. 2020) - (to appear in Computational Statistics -and Data Science). It also implements previously proposed boosting -algorithms in the simulation section of the paper: L2Boost, LADBoost, -MBoost (Friedman, J. H. (2001) ) and Robloss -(Lutz et al. (2008) ). +. It also implements previously proposed +boosting algorithms in the simulation section of the paper: L2Boost, +LADBoost, MBoost (Friedman, J. H. (2001) ) and +Robloss (Lutz et al. (2008) ). %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-algaeClassify.spec b/specs/R-CRAN-algaeClassify.spec deleted file mode 100644 index 14eb21443..000000000 --- a/specs/R-CRAN-algaeClassify.spec +++ /dev/null @@ -1,94 +0,0 @@ -%global __brp_check_rpaths %{nil} -%global __requires_exclude ^libmpi -%global packname algaeClassify -%global packver 2.0.3 -%global rlibdir /usr/local/lib/R/library - -Name: R-CRAN-%{packname} -Version: 2.0.3 -Release: 1%{?dist}%{?buildtag} -Summary: Tools to Query the Algaebase Online Database, Standardize Phytoplankton Taxonomic Data, and Perform Functional Group Classifications - -License: CC0 -URL: https://cran.r-project.org/package=%{packname} -Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz - - -BuildRequires: R-devel >= 4.3.0 -Requires: R-core >= 4.3.0 -BuildArch: noarch -BuildRequires: R-CRAN-lubridate -BuildRequires: R-stats -BuildRequires: R-CRAN-ritis -BuildRequires: R-CRAN-curl -BuildRequires: R-CRAN-jsonlite -BuildRequires: R-methods -BuildRequires: R-CRAN-RCurl -Requires: R-CRAN-lubridate -Requires: R-stats -Requires: R-CRAN-ritis -Requires: R-CRAN-curl -Requires: R-CRAN-jsonlite -Requires: R-methods -Requires: R-CRAN-RCurl - -%description -Functions that facilitate the use of accepted taxonomic nomenclature, -collection of functional trait data, and assignment of functional group -classifications to phytoplankton species. Possible classifications include -Morpho-functional group (MFG; Salmaso et al. 2015 ) -and CSR (Reynolds 1988; Functional morphology and the adaptive strategies -of phytoplankton. In C.D. Sandgren (ed). Growth and reproductive -strategies of freshwater phytoplankton, 388-433. Cambridge University -Press, New York). Versions 2.0.0 and later includes new functions for -querying the algaebase online taxonomic database (www.algaebase.org), -however these functions require a valid API key that must be acquired from -the algaebase admin. Note that none of the algaeClassify authors are -affiliated with algaebase in any way. Taxonomic names can also be checked -against a variety of taxonomic databases using the Global Names Resolver -service via its API (). In addition, -currently accepted and outdated synonyms, and higher taxonomy, can be -extracted for lists of species from the ITIS database using wrapper -functions for the ritis package. The algaeClassify package is a product of -the GEISHA (Global Evaluation of the Impacts of Storms on freshwater -Habitat and Structure of phytoplankton Assemblages), funded by CESAB -(Centre for Synthesis and Analysis of Biodiversity) and the USGS John -Wesley Powell Center for Synthesis and Analysis, with data and other -support provided by members of GLEON (Global Lake Ecology Observation -Network). DISCLAIMER: This software has been approved for release by the -U.S. Geological Survey (USGS). Although the software has been subjected to -rigorous review, the USGS reserves the right to update the software as -needed pursuant to further analysis and review. No warranty, expressed or -implied, is made by the USGS or the U.S. Government as to the -functionality of the software and related material nor shall the fact of -release constitute any such warranty. Furthermore, the software is -released on condition that neither the USGS nor the U.S. Government shall -be held liable for any damages resulting from its authorized or -unauthorized use. - -%prep -%setup -q -c -n %{packname} - -# fix end of executable files -find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; -# prevent binary stripping -[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ - sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true -[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ - sed -i 's@-g0@@g' {} \; || true -# don't allow local prefix in executable scripts -find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; - -%build - -%install - -mkdir -p %{buildroot}%{rlibdir} -%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} -test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) -rm -f %{buildroot}%{rlibdir}/R.css -# remove buildroot from installed files -find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; - -%files -%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-assertions.spec b/specs/R-CRAN-assertions.spec index 0689d04b2..6d8442ae9 100644 --- a/specs/R-CRAN-assertions.spec +++ b/specs/R-CRAN-assertions.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname assertions -%global packver 0.1.0 +%global packver 0.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.2.0 Release: 1%{?dist}%{?buildtag} Summary: Simple Assertions for Beautiful and Customisable Error Messages @@ -19,9 +19,11 @@ Requires: R-core BuildArch: noarch BuildRequires: R-CRAN-cli BuildRequires: R-CRAN-glue +BuildRequires: R-methods BuildRequires: R-CRAN-rlang Requires: R-CRAN-cli Requires: R-CRAN-glue +Requires: R-methods Requires: R-CRAN-rlang %description diff --git a/specs/R-CRAN-cleaner.spec b/specs/R-CRAN-cleaner.spec index b58afcaf4..40cc12602 100644 --- a/specs/R-CRAN-cleaner.spec +++ b/specs/R-CRAN-cleaner.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname cleaner -%global packver 1.5.4 +%global packver 1.5.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.5.4 +Version: 1.5.5 Release: 1%{?dist}%{?buildtag} Summary: Fast and Easy Data Cleaning diff --git a/specs/R-CRAN-cmstatr.spec b/specs/R-CRAN-cmstatr.spec index 7f9a45c42..e02deb94b 100644 --- a/specs/R-CRAN-cmstatr.spec +++ b/specs/R-CRAN-cmstatr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname cmstatr -%global packver 0.9.3 +%global packver 0.10.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.9.3 +Version: 0.10.0 Release: 1%{?dist}%{?buildtag} Summary: Statistical Methods for Composite Material Data @@ -26,6 +26,7 @@ BuildRequires: R-CRAN-purrr BuildRequires: R-CRAN-rlang BuildRequires: R-stats BuildRequires: R-CRAN-tibble +BuildRequires: R-CRAN-tidyr Requires: R-CRAN-dplyr Requires: R-CRAN-generics Requires: R-CRAN-ggplot2 @@ -35,6 +36,7 @@ Requires: R-CRAN-purrr Requires: R-CRAN-rlang Requires: R-stats Requires: R-CRAN-tibble +Requires: R-CRAN-tidyr %description An implementation of the statistical methods commonly used for advanced diff --git a/specs/R-CRAN-cols.spec b/specs/R-CRAN-cols.spec index 433cf0895..51e86d708 100644 --- a/specs/R-CRAN-cols.spec +++ b/specs/R-CRAN-cols.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname cols -%global packver 1.2 +%global packver 1.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2 +Version: 1.3 Release: 1%{?dist}%{?buildtag} Summary: Constrained Ordinary Least Squares diff --git a/specs/R-CRAN-datacutr.spec b/specs/R-CRAN-datacutr.spec index 2639c3844..1ae183db4 100644 --- a/specs/R-CRAN-datacutr.spec +++ b/specs/R-CRAN-datacutr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname datacutr -%global packver 0.1.0 +%global packver 0.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.2.0 Release: 1%{?dist}%{?buildtag} Summary: SDTM Datacut @@ -14,27 +14,29 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.5 -Requires: R-core >= 3.5 +BuildRequires: R-devel >= 4.1 +Requires: R-core >= 4.1 BuildArch: noarch +BuildRequires: R-CRAN-tibble >= 3.0.0 BuildRequires: R-CRAN-lubridate >= 1.7.4 BuildRequires: R-CRAN-magrittr >= 1.5 +BuildRequires: R-CRAN-stringr >= 1.4.0 BuildRequires: R-CRAN-dplyr >= 1.0.5 BuildRequires: R-CRAN-rlang >= 0.4.4 +BuildRequires: R-CRAN-reactable >= 0.4.4 BuildRequires: R-CRAN-purrr >= 0.3.3 +BuildRequires: R-CRAN-admiraldev >= 0.3.0 BuildRequires: R-CRAN-assertthat >= 0.2.1 -BuildRequires: R-CRAN-admiraldev -BuildRequires: R-CRAN-stringr -BuildRequires: R-CRAN-tibble +Requires: R-CRAN-tibble >= 3.0.0 Requires: R-CRAN-lubridate >= 1.7.4 Requires: R-CRAN-magrittr >= 1.5 +Requires: R-CRAN-stringr >= 1.4.0 Requires: R-CRAN-dplyr >= 1.0.5 Requires: R-CRAN-rlang >= 0.4.4 +Requires: R-CRAN-reactable >= 0.4.4 Requires: R-CRAN-purrr >= 0.3.3 +Requires: R-CRAN-admiraldev >= 0.3.0 Requires: R-CRAN-assertthat >= 0.2.1 -Requires: R-CRAN-admiraldev -Requires: R-CRAN-stringr -Requires: R-CRAN-tibble %description Supports the process of applying a cut to Standard Data Tabulation Model diff --git a/specs/R-CRAN-deident.spec b/specs/R-CRAN-deident.spec new file mode 100644 index 000000000..fefac33e4 --- /dev/null +++ b/specs/R-CRAN-deident.spec @@ -0,0 +1,81 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname deident +%global packver 1.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: Persistent Data Anonymization Pipeline + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 2.10 +Requires: R-core >= 2.10 +BuildArch: noarch +BuildRequires: R-CRAN-rlang >= 0.4.11 +BuildRequires: R-CRAN-R6 +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-openssl +BuildRequires: R-CRAN-tidyselect +BuildRequires: R-CRAN-glue +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-yaml +BuildRequires: R-CRAN-readr +BuildRequires: R-CRAN-openxlsx +BuildRequires: R-CRAN-lemon +BuildRequires: R-CRAN-withr +BuildRequires: R-CRAN-fs +Requires: R-CRAN-rlang >= 0.4.11 +Requires: R-CRAN-R6 +Requires: R-CRAN-dplyr +Requires: R-CRAN-openssl +Requires: R-CRAN-tidyselect +Requires: R-CRAN-glue +Requires: R-CRAN-purrr +Requires: R-CRAN-stringr +Requires: R-CRAN-yaml +Requires: R-CRAN-readr +Requires: R-CRAN-openxlsx +Requires: R-CRAN-lemon +Requires: R-CRAN-withr +Requires: R-CRAN-fs + +%description +A framework for the replicable removal of personally identifiable data +(PID) in data sets. The package implements a suite of methods to suit +different data types based on the suggestions of Garfinkel (2015) + and the ICO "Guidelines on Anonymization" +(2012) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-ecdata.spec b/specs/R-CRAN-ecdata.spec new file mode 100644 index 000000000..26a799225 --- /dev/null +++ b/specs/R-CRAN-ecdata.spec @@ -0,0 +1,72 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname ecdata +%global packver 1.1.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.1.1 +Release: 1%{?dist}%{?buildtag} +Summary: Loads Data from the Executive Communications Dataset + +License: CC BY 4.0 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.0 +Requires: R-core >= 4.0 +BuildArch: noarch +BuildRequires: R-CRAN-cli >= 3.6.3 +BuildRequires: R-CRAN-memoise >= 2.0.0 +BuildRequires: R-CRAN-arrow >= 16.1.0 +BuildRequires: R-CRAN-glue >= 1.4.0 +BuildRequires: R-CRAN-rlang >= 1.1.0 +BuildRequires: R-CRAN-cachem >= 1.0.0 +BuildRequires: R-CRAN-piggyback >= 0.1.5 +BuildRequires: R-utils +BuildRequires: R-tools +BuildRequires: R-CRAN-vctrs +BuildRequires: R-CRAN-curl +Requires: R-CRAN-cli >= 3.6.3 +Requires: R-CRAN-memoise >= 2.0.0 +Requires: R-CRAN-arrow >= 16.1.0 +Requires: R-CRAN-glue >= 1.4.0 +Requires: R-CRAN-rlang >= 1.1.0 +Requires: R-CRAN-cachem >= 1.0.0 +Requires: R-CRAN-piggyback >= 0.1.5 +Requires: R-utils +Requires: R-tools +Requires: R-CRAN-vctrs +Requires: R-CRAN-curl + +%description +A minimal package for downloading data from 'GitHub' repositories of the +Executive Communications Database. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-eoa3.spec b/specs/R-CRAN-eoa3.spec index 5cb8923a8..b0387e61c 100644 --- a/specs/R-CRAN-eoa3.spec +++ b/specs/R-CRAN-eoa3.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname eoa3 -%global packver 1.0.0.1 +%global packver 1.0.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0.1 +Version: 1.0.0.2 Release: 1%{?dist}%{?buildtag} Summary: Wildlife Mortality Estimator for Low Fatality Rates and Imperfect Detection diff --git a/specs/R-CRAN-epiR.spec b/specs/R-CRAN-epiR.spec index fb28b974a..5df1bbf18 100644 --- a/specs/R-CRAN-epiR.spec +++ b/specs/R-CRAN-epiR.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname epiR -%global packver 2.0.76 +%global packver 2.0.77 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.76 +Version: 2.0.77 Release: 1%{?dist}%{?buildtag} Summary: Tools for the Analysis of Epidemiological Data diff --git a/specs/R-CRAN-findpython.spec b/specs/R-CRAN-findpython.spec index 60cb2f201..b6611f636 100644 --- a/specs/R-CRAN-findpython.spec +++ b/specs/R-CRAN-findpython.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname findpython -%global packver 1.0.8 +%global packver 1.0.9 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.8 +Version: 1.0.9 Release: 1%{?dist}%{?buildtag} Summary: Functions to Find an Acceptable Python Binary diff --git a/specs/R-CRAN-forestdynR.spec b/specs/R-CRAN-forestdynR.spec new file mode 100644 index 000000000..921f205c5 --- /dev/null +++ b/specs/R-CRAN-forestdynR.spec @@ -0,0 +1,66 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname forestdynR +%global packver 0.0.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.0.1 +Release: 1%{?dist}%{?buildtag} +Summary: Calculate Forest Dynamics + +License: GPL (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.3.0 +Requires: R-core >= 4.3.0 +BuildArch: noarch +BuildRequires: R-CRAN-BIOMASS >= 2.1.11 +BuildRequires: R-tcltk >= 1.0.0 +Requires: R-CRAN-BIOMASS >= 2.1.11 +Requires: R-tcltk >= 1.0.0 + +%description +Determines the dynamics of tree species communities (mortality rates, +recruitment, loss and gain in basal area, net changes and turnover). +Important notes are a) The 'forest_df' argument (data) must contain the +columns 'plot' (plot identification), 'spp' (species identification), +DBH_1 (Diameter at breast height in first year of measure) and DBH_2 +(Diameter at breast height in second year of measure). DBH_1 and DBH_2 +must be numeric values; b) example input file in +'data(forest_df_example)'; c) The argument 'inv_time' represents the time +between inventories, in years; d) The 'coord' argument must be of the type +'c(longitude, latitude)', with decimal degree values; e) Argument 'add_wd' +represents a dataframe with wood density values (g cm-3) format with three +columns ('genus', 'species', 'wd'). This argument is set to NULL by +default, and if isn't provided, the wood density will be estimated with +the getWoodDensity() function from the 'BIOMASS' package. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-forestplot.spec b/specs/R-CRAN-forestplot.spec index 0a498d401..6e6c26df7 100644 --- a/specs/R-CRAN-forestplot.spec +++ b/specs/R-CRAN-forestplot.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname forestplot -%global packver 3.1.5 +%global packver 3.1.6 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.1.5 +Version: 3.1.6 Release: 1%{?dist}%{?buildtag} Summary: Advanced Forest Plot Using 'grid' Graphics diff --git a/specs/R-CRAN-galah.spec b/specs/R-CRAN-galah.spec index a060b7701..4162dfb75 100644 --- a/specs/R-CRAN-galah.spec +++ b/specs/R-CRAN-galah.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname galah -%global packver 2.0.2 +%global packver 2.1.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.2 +Version: 2.1.0 Release: 1%{?dist}%{?buildtag} Summary: Biodiversity Data from the GBIF Node Network @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 4.1.0 -Requires: R-core >= 4.1.0 +BuildRequires: R-devel >= 4.3.0 +Requires: R-core >= 4.3.0 BuildArch: noarch BuildRequires: R-CRAN-glue >= 1.3.2 BuildRequires: R-CRAN-lifecycle >= 1.0.0 diff --git a/specs/R-CRAN-ggiraph.spec b/specs/R-CRAN-ggiraph.spec index 4a5f1b974..af777709e 100644 --- a/specs/R-CRAN-ggiraph.spec +++ b/specs/R-CRAN-ggiraph.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ggiraph -%global packver 0.8.10 +%global packver 0.8.11 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.8.10 +Version: 0.8.11 Release: 1%{?dist}%{?buildtag} Summary: Make 'ggplot2' Graphics Interactive @@ -17,7 +17,7 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: libpng-devel BuildRequires: R-devel Requires: R-core -BuildRequires: R-CRAN-ggplot2 >= 3.5.0 +BuildRequires: R-CRAN-ggplot2 >= 3.5.1 BuildRequires: R-CRAN-htmlwidgets >= 1.5 BuildRequires: R-CRAN-Rcpp >= 1.0 BuildRequires: R-CRAN-cli @@ -29,7 +29,7 @@ BuildRequires: R-stats BuildRequires: R-CRAN-systemfonts BuildRequires: R-CRAN-uuid BuildRequires: R-CRAN-vctrs -Requires: R-CRAN-ggplot2 >= 3.5.0 +Requires: R-CRAN-ggplot2 >= 3.5.1 Requires: R-CRAN-htmlwidgets >= 1.5 Requires: R-CRAN-Rcpp >= 1.0 Requires: R-CRAN-cli diff --git a/specs/R-CRAN-hdar.spec b/specs/R-CRAN-hdar.spec index fd2d93d1f..612d59b09 100644 --- a/specs/R-CRAN-hdar.spec +++ b/specs/R-CRAN-hdar.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname hdar -%global packver 1.0.2 +%global packver 1.0.4 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.2 +Version: 1.0.4 Release: 1%{?dist}%{?buildtag} Summary: 'REST' API Client for Accessing Data on 'WEkEO HDA V2' diff --git a/specs/R-CRAN-hdbcp.spec b/specs/R-CRAN-hdbcp.spec index 426cc93f5..4c449cc9e 100644 --- a/specs/R-CRAN-hdbcp.spec +++ b/specs/R-CRAN-hdbcp.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname hdbcp -%global packver 0.1.0 +%global packver 1.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 1.0.0 Release: 1%{?dist}%{?buildtag} Summary: Bayesian Change Point Detection for High-Dimensional Data diff --git a/specs/R-CRAN-hyperbolicDEA.spec b/specs/R-CRAN-hyperbolicDEA.spec index 53938d302..76ae47687 100644 --- a/specs/R-CRAN-hyperbolicDEA.spec +++ b/specs/R-CRAN-hyperbolicDEA.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname hyperbolicDEA -%global packver 1.0.0 +%global packver 1.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0 +Version: 1.0.1 Release: 1%{?dist}%{?buildtag} Summary: Hyperbolic DEA Estimation diff --git a/specs/R-CRAN-kergp.spec b/specs/R-CRAN-kergp.spec index cc05ede35..0b276f156 100644 --- a/specs/R-CRAN-kergp.spec +++ b/specs/R-CRAN-kergp.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname kergp -%global packver 0.5.7 +%global packver 0.5.8 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.5.7 +Version: 0.5.8 Release: 1%{?dist}%{?buildtag} Summary: Gaussian Process Laboratory diff --git a/specs/R-CRAN-mlt.docreg.spec b/specs/R-CRAN-mlt.docreg.spec index bc9b751aa..a0e093faf 100644 --- a/specs/R-CRAN-mlt.docreg.spec +++ b/specs/R-CRAN-mlt.docreg.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname mlt.docreg -%global packver 1.1-9 +%global packver 1.1-10 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.9 +Version: 1.1.10 Release: 1%{?dist}%{?buildtag} Summary: Most Likely Transformations: Documentation and Regression Tests diff --git a/specs/R-CRAN-multiDoE.spec b/specs/R-CRAN-multiDoE.spec new file mode 100644 index 000000000..d85c398fe --- /dev/null +++ b/specs/R-CRAN-multiDoE.spec @@ -0,0 +1,62 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname multiDoE +%global packver 0.9.2 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.9.2 +Release: 1%{?dist}%{?buildtag} +Summary: Multi-Criteria Design of Experiments for Optimal Design + +License: CC BY 4.0 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-magrittr +BuildRequires: R-CRAN-plotly +BuildRequires: R-CRAN-pracma +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-magrittr +Requires: R-CRAN-plotly +Requires: R-CRAN-pracma + +%description +Multi-criteria design of experiments algorithm that simultaneously +optimizes up to six different criteria ('I', 'Id', 'D', 'Ds', 'A' and +'As'). The algorithm finds the optimal Pareto front and, if requested, +selects a possible symmetrical design on it. The symmetrical design is +selected based on two techniques: minimum distance with the Utopia point +or the 'TOPSIS' approach. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-mvvg.spec b/specs/R-CRAN-mvvg.spec new file mode 100644 index 000000000..bf0408bbb --- /dev/null +++ b/specs/R-CRAN-mvvg.spec @@ -0,0 +1,56 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname mvvg +%global packver 0.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Matrix-Variate Variance-Gamma Distribution + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch +BuildRequires: R-CRAN-MixMatrix +BuildRequires: R-CRAN-nlme +BuildRequires: R-CRAN-psych +Requires: R-CRAN-MixMatrix +Requires: R-CRAN-nlme +Requires: R-CRAN-psych + +%description +Rudimentary functions for sampling and calculating density from the +matrix-variate variance-gamma distribution. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-openairmaps.spec b/specs/R-CRAN-openairmaps.spec index 89cceac34..6cc8e469a 100644 --- a/specs/R-CRAN-openairmaps.spec +++ b/specs/R-CRAN-openairmaps.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname openairmaps -%global packver 0.9.0 +%global packver 0.9.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.9.0 +Version: 0.9.1 Release: 1%{?dist}%{?buildtag} Summary: Create Maps of Air Pollution Data diff --git a/specs/R-CRAN-opendataformat.spec b/specs/R-CRAN-opendataformat.spec index 617c449b9..79cc63033 100644 --- a/specs/R-CRAN-opendataformat.spec +++ b/specs/R-CRAN-opendataformat.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname opendataformat -%global packver 1.3.0 +%global packver 2.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3.0 +Version: 2.0.0 Release: 1%{?dist}%{?buildtag} Summary: Reading and Writing Open Data Format Files @@ -17,15 +17,17 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.6 Requires: R-core >= 3.6 BuildArch: noarch -BuildRequires: R-CRAN-cli BuildRequires: R-CRAN-magrittr BuildRequires: R-CRAN-xml2 BuildRequires: R-CRAN-data.table +BuildRequires: R-CRAN-tibble +BuildRequires: R-CRAN-cli BuildRequires: R-CRAN-zip -Requires: R-CRAN-cli Requires: R-CRAN-magrittr Requires: R-CRAN-xml2 Requires: R-CRAN-data.table +Requires: R-CRAN-tibble +Requires: R-CRAN-cli Requires: R-CRAN-zip %description diff --git a/specs/R-CRAN-pkgdepR.spec b/specs/R-CRAN-pkgdepR.spec index a868f78f8..3de5068ae 100644 --- a/specs/R-CRAN-pkgdepR.spec +++ b/specs/R-CRAN-pkgdepR.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname pkgdepR -%global packver 1.1.0 +%global packver 1.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.0 +Version: 1.1.1 Release: 1%{?dist}%{?buildtag} Summary: Statically Determine Function Dependencies Between Packages diff --git a/specs/R-CRAN-polylabelr.spec b/specs/R-CRAN-polylabelr.spec index 58a234320..5b342fd68 100644 --- a/specs/R-CRAN-polylabelr.spec +++ b/specs/R-CRAN-polylabelr.spec @@ -1,11 +1,12 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname polylabelr -%global packver 0.2.0 +%global packver 0.3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.0 -Release: 3%{?dist}%{?buildtag} +Version: 0.3.0 +Release: 1%{?dist}%{?buildtag} Summary: Find the Pole of Inaccessibility (Visual Center) of a Polygon License: MIT + file LICENSE @@ -27,7 +28,15 @@ polygon. %prep %setup -q -c -n %{packname} +# fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build @@ -35,9 +44,10 @@ find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} - test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname} diff --git a/specs/R-CRAN-pooledpeaks.spec b/specs/R-CRAN-pooledpeaks.spec index 7287166c0..4fcd79446 100644 --- a/specs/R-CRAN-pooledpeaks.spec +++ b/specs/R-CRAN-pooledpeaks.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname pooledpeaks -%global packver 1.0.6 +%global packver 1.0.7 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.6 +Version: 1.0.7 Release: 1%{?dist}%{?buildtag} Summary: Genetic Analysis of Pooled Samples diff --git a/specs/R-CRAN-sgapi.spec b/specs/R-CRAN-pseudobibeR.spec similarity index 59% rename from specs/R-CRAN-sgapi.spec rename to specs/R-CRAN-pseudobibeR.spec index e8aebcd93..7acd94674 100644 --- a/specs/R-CRAN-sgapi.spec +++ b/specs/R-CRAN-pseudobibeR.spec @@ -1,45 +1,43 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi -%global packname sgapi -%global packver 1.0.2 +%global packname pseudobibeR +%global packver 1.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.2 +Version: 1.2 Release: 1%{?dist}%{?buildtag} -Summary: Aid Querying 'nomis' and 'Office for National Statistics Open Geography' APIs +Summary: Aggregate Counts of Linguistic Features License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.6 -Requires: R-core >= 3.6 +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 BuildArch: noarch -BuildRequires: R-CRAN-magrittr -BuildRequires: R-CRAN-sf BuildRequires: R-CRAN-dplyr -BuildRequires: R-CRAN-httr -BuildRequires: R-CRAN-readr -BuildRequires: R-CRAN-xml2 -BuildRequires: R-methods -Requires: R-CRAN-magrittr -Requires: R-CRAN-sf +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-quanteda +BuildRequires: R-CRAN-quanteda.textstats +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-tibble +BuildRequires: R-CRAN-magrittr Requires: R-CRAN-dplyr -Requires: R-CRAN-httr -Requires: R-CRAN-readr -Requires: R-CRAN-xml2 -Requires: R-methods +Requires: R-CRAN-purrr +Requires: R-CRAN-quanteda +Requires: R-CRAN-quanteda.textstats +Requires: R-CRAN-rlang +Requires: R-CRAN-stringr +Requires: R-CRAN-tibble +Requires: R-CRAN-magrittr %description -Facilitates extraction of geospatial data from the 'Office for National -Statistics Open Geography' and 'nomis' Application Programming Interfaces -(APIs). Simplifies process of querying 'nomis' datasets - and extracting desired datasets in dataframe -format. Extracts area shapefiles at chosen resolution from 'Office for -National Statistics Open Geography' -. +Calculates the lexicogrammatical and functional features described by +Biber (1985) and widely used for +text-type, register, and genre classification tasks. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-rsconnect.spec b/specs/R-CRAN-rsconnect.spec index 91d8ca3d7..5d618bcf4 100644 --- a/specs/R-CRAN-rsconnect.spec +++ b/specs/R-CRAN-rsconnect.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname rsconnect -%global packver 1.3.2 +%global packver 1.3.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3.2 +Version: 1.3.3 Release: 1%{?dist}%{?buildtag} Summary: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io', and 'RPubs' diff --git a/specs/R-CRAN-schoRsch.spec b/specs/R-CRAN-schoRsch.spec index 9996524b6..59c932904 100644 --- a/specs/R-CRAN-schoRsch.spec +++ b/specs/R-CRAN-schoRsch.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname schoRsch -%global packver 1.10 +%global packver 1.11 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.10 +Version: 1.11 Release: 1%{?dist}%{?buildtag} Summary: Tools for Analyzing Factorial Experiments diff --git a/specs/R-CRAN-sleeperapi.spec b/specs/R-CRAN-sleeperapi.spec index 7fda0efe8..cf3150b54 100644 --- a/specs/R-CRAN-sleeperapi.spec +++ b/specs/R-CRAN-sleeperapi.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname sleeperapi -%global packver 1.1.1 +%global packver 1.1.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.1 +Version: 1.1.2 Release: 1%{?dist}%{?buildtag} Summary: Wrapper Functions Around 'Sleeper' (Fantasy Sports) API diff --git a/specs/R-CRAN-spatstat.linnet.spec b/specs/R-CRAN-spatstat.linnet.spec index 55ef2df0b..41520039e 100644 --- a/specs/R-CRAN-spatstat.linnet.spec +++ b/specs/R-CRAN-spatstat.linnet.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname spatstat.linnet -%global packver 3.2-2 +%global packver 3.2-3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.2.2 +Version: 3.2.3 Release: 1%{?dist}%{?buildtag} Summary: Linear Networks Functionality of the 'spatstat' Family @@ -16,28 +16,28 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 -BuildRequires: R-CRAN-spatstat.geom >= 3.3.3 +BuildRequires: R-CRAN-spatstat.geom >= 3.3.4 +BuildRequires: R-CRAN-spatstat.explore >= 3.3.3 BuildRequires: R-CRAN-spatstat.random >= 3.3.2 -BuildRequires: R-CRAN-spatstat.explore >= 3.3.2 -BuildRequires: R-CRAN-spatstat.model >= 3.3.1 -BuildRequires: R-CRAN-spatstat.data >= 3.1.2 -BuildRequires: R-CRAN-spatstat.utils >= 3.1.0 +BuildRequires: R-CRAN-spatstat.model >= 3.3.2 +BuildRequires: R-CRAN-spatstat.data >= 3.1.4 +BuildRequires: R-CRAN-spatstat.univar >= 3.1.1 +BuildRequires: R-CRAN-spatstat.utils >= 3.1.1 BuildRequires: R-CRAN-spatstat.sparse >= 3.1.0 -BuildRequires: R-CRAN-spatstat.univar >= 3.0.1 BuildRequires: R-stats BuildRequires: R-graphics BuildRequires: R-grDevices BuildRequires: R-methods BuildRequires: R-utils BuildRequires: R-CRAN-Matrix -Requires: R-CRAN-spatstat.geom >= 3.3.3 +Requires: R-CRAN-spatstat.geom >= 3.3.4 +Requires: R-CRAN-spatstat.explore >= 3.3.3 Requires: R-CRAN-spatstat.random >= 3.3.2 -Requires: R-CRAN-spatstat.explore >= 3.3.2 -Requires: R-CRAN-spatstat.model >= 3.3.1 -Requires: R-CRAN-spatstat.data >= 3.1.2 -Requires: R-CRAN-spatstat.utils >= 3.1.0 +Requires: R-CRAN-spatstat.model >= 3.3.2 +Requires: R-CRAN-spatstat.data >= 3.1.4 +Requires: R-CRAN-spatstat.univar >= 3.1.1 +Requires: R-CRAN-spatstat.utils >= 3.1.1 Requires: R-CRAN-spatstat.sparse >= 3.1.0 -Requires: R-CRAN-spatstat.univar >= 3.0.1 Requires: R-stats Requires: R-graphics Requires: R-grDevices diff --git a/specs/R-CRAN-spatstat.model.spec b/specs/R-CRAN-spatstat.model.spec index 56bbd760f..6aaa953e6 100644 --- a/specs/R-CRAN-spatstat.model.spec +++ b/specs/R-CRAN-spatstat.model.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname spatstat.model -%global packver 3.3-2 +%global packver 3.3-3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.3.2 +Version: 3.3.3 Release: 1%{?dist}%{?buildtag} Summary: Parametric Statistical Modelling and Inference for the 'spatstat' Family @@ -16,13 +16,13 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 -BuildRequires: R-CRAN-spatstat.geom >= 3.3.0 -BuildRequires: R-CRAN-spatstat.random >= 3.3.0 +BuildRequires: R-CRAN-spatstat.geom >= 3.3.4 +BuildRequires: R-CRAN-spatstat.random >= 3.3.2 BuildRequires: R-CRAN-spatstat.explore >= 3.3.0 +BuildRequires: R-CRAN-spatstat.data >= 3.1.4 +BuildRequires: R-CRAN-spatstat.univar >= 3.1.1 +BuildRequires: R-CRAN-spatstat.utils >= 3.1.1 BuildRequires: R-CRAN-spatstat.sparse >= 3.1.0 -BuildRequires: R-CRAN-spatstat.utils >= 3.0.5 -BuildRequires: R-CRAN-spatstat.data >= 3.0.4 -BuildRequires: R-CRAN-spatstat.univar >= 3.0.0 BuildRequires: R-CRAN-goftest >= 1.2.2 BuildRequires: R-stats BuildRequires: R-graphics @@ -35,13 +35,13 @@ BuildRequires: R-CRAN-mgcv BuildRequires: R-CRAN-Matrix BuildRequires: R-CRAN-abind BuildRequires: R-CRAN-tensor -Requires: R-CRAN-spatstat.geom >= 3.3.0 -Requires: R-CRAN-spatstat.random >= 3.3.0 +Requires: R-CRAN-spatstat.geom >= 3.3.4 +Requires: R-CRAN-spatstat.random >= 3.3.2 Requires: R-CRAN-spatstat.explore >= 3.3.0 +Requires: R-CRAN-spatstat.data >= 3.1.4 +Requires: R-CRAN-spatstat.univar >= 3.1.1 +Requires: R-CRAN-spatstat.utils >= 3.1.1 Requires: R-CRAN-spatstat.sparse >= 3.1.0 -Requires: R-CRAN-spatstat.utils >= 3.0.5 -Requires: R-CRAN-spatstat.data >= 3.0.4 -Requires: R-CRAN-spatstat.univar >= 3.0.0 Requires: R-CRAN-goftest >= 1.2.2 Requires: R-stats Requires: R-graphics diff --git a/specs/R-CRAN-spatstat.spec b/specs/R-CRAN-spatstat.spec index 777c2a7c2..865e69bda 100644 --- a/specs/R-CRAN-spatstat.spec +++ b/specs/R-CRAN-spatstat.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname spatstat -%global packver 3.2-1 +%global packver 3.3-0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.2.1 +Version: 3.3.0 Release: 1%{?dist}%{?buildtag} Summary: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests @@ -17,23 +17,23 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildArch: noarch -BuildRequires: R-CRAN-spatstat.geom >= 3.3.3 +BuildRequires: R-CRAN-spatstat.geom >= 3.3.4 +BuildRequires: R-CRAN-spatstat.explore >= 3.3.3 +BuildRequires: R-CRAN-spatstat.model >= 3.3.3 BuildRequires: R-CRAN-spatstat.random >= 3.3.2 -BuildRequires: R-CRAN-spatstat.explore >= 3.3.2 -BuildRequires: R-CRAN-spatstat.model >= 3.3.2 BuildRequires: R-CRAN-spatstat.linnet >= 3.2.2 -BuildRequires: R-CRAN-spatstat.data >= 3.1.0 -BuildRequires: R-CRAN-spatstat.utils >= 3.1.0 -BuildRequires: R-CRAN-spatstat.univar >= 3.0.0 +BuildRequires: R-CRAN-spatstat.data >= 3.1.4 +BuildRequires: R-CRAN-spatstat.univar >= 3.1.1 +BuildRequires: R-CRAN-spatstat.utils >= 3.1.1 BuildRequires: R-utils -Requires: R-CRAN-spatstat.geom >= 3.3.3 +Requires: R-CRAN-spatstat.geom >= 3.3.4 +Requires: R-CRAN-spatstat.explore >= 3.3.3 +Requires: R-CRAN-spatstat.model >= 3.3.3 Requires: R-CRAN-spatstat.random >= 3.3.2 -Requires: R-CRAN-spatstat.explore >= 3.3.2 -Requires: R-CRAN-spatstat.model >= 3.3.2 Requires: R-CRAN-spatstat.linnet >= 3.2.2 -Requires: R-CRAN-spatstat.data >= 3.1.0 -Requires: R-CRAN-spatstat.utils >= 3.1.0 -Requires: R-CRAN-spatstat.univar >= 3.0.0 +Requires: R-CRAN-spatstat.data >= 3.1.4 +Requires: R-CRAN-spatstat.univar >= 3.1.1 +Requires: R-CRAN-spatstat.utils >= 3.1.1 Requires: R-utils %description diff --git a/specs/R-CRAN-spotoroo.spec b/specs/R-CRAN-spotoroo.spec index 350146242..6aedb9220 100644 --- a/specs/R-CRAN-spotoroo.spec +++ b/specs/R-CRAN-spotoroo.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname spotoroo -%global packver 0.1.4 +%global packver 0.1.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.4 +Version: 0.1.5 Release: 1%{?dist}%{?buildtag} Summary: Spatiotemporal Clustering of Satellite Hot Spot Data @@ -24,7 +24,6 @@ BuildRequires: R-CRAN-dplyr >= 1.0.0 BuildRequires: R-CRAN-ggExtra >= 0.9 BuildRequires: R-CRAN-ggbeeswarm >= 0.7.2 BuildRequires: R-CRAN-geodist >= 0.0.4 -BuildRequires: R-utils BuildRequires: R-stats BuildRequires: R-CRAN-patchwork BuildRequires: R-CRAN-ggrepel @@ -35,7 +34,6 @@ Requires: R-CRAN-dplyr >= 1.0.0 Requires: R-CRAN-ggExtra >= 0.9 Requires: R-CRAN-ggbeeswarm >= 0.7.2 Requires: R-CRAN-geodist >= 0.0.4 -Requires: R-utils Requires: R-stats Requires: R-CRAN-patchwork Requires: R-CRAN-ggrepel diff --git a/specs/R-CRAN-talkr.spec b/specs/R-CRAN-talkr.spec new file mode 100644 index 000000000..1f081baae --- /dev/null +++ b/specs/R-CRAN-talkr.spec @@ -0,0 +1,70 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname talkr +%global packver 0.1.3 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.3 +Release: 1%{?dist}%{?buildtag} +Summary: Plotting Conversation Data + +License: Apache License (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch +BuildRequires: R-CRAN-cowplot +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-ggthemes +BuildRequires: R-CRAN-knitr +BuildRequires: R-stats +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-tidyr +BuildRequires: R-CRAN-tidyselect +Requires: R-CRAN-cowplot +Requires: R-CRAN-dplyr +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-ggthemes +Requires: R-CRAN-knitr +Requires: R-stats +Requires: R-CRAN-stringr +Requires: R-CRAN-tidyr +Requires: R-CRAN-tidyselect + +%description +Visualisation, analysis and quality control of conversational data. Rapid +and visual insights into the nature, timing and quality of time-aligned +annotations in conversational corpora. For more details, see Dingemanse et +al., (2022) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-tram.spec b/specs/R-CRAN-tram.spec index bb55342fc..e5f0b79f4 100644 --- a/specs/R-CRAN-tram.spec +++ b/specs/R-CRAN-tram.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname tram -%global packver 1.1-2 +%global packver 1.2-0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.2 +Version: 1.2.0 Release: 1%{?dist}%{?buildtag} Summary: Transformation Models @@ -16,8 +16,9 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 +BuildArch: noarch BuildRequires: R-CRAN-mlt >= 1.6.0 -BuildRequires: R-CRAN-mvtnorm >= 1.3.0 +BuildRequires: R-CRAN-mvtnorm >= 1.3.2 BuildRequires: R-CRAN-basefun >= 1.1.2 BuildRequires: R-CRAN-variables >= 1.0.4 BuildRequires: R-CRAN-Formula @@ -29,7 +30,7 @@ BuildRequires: R-graphics BuildRequires: R-CRAN-Matrix BuildRequires: R-methods Requires: R-CRAN-mlt >= 1.6.0 -Requires: R-CRAN-mvtnorm >= 1.3.0 +Requires: R-CRAN-mvtnorm >= 1.3.2 Requires: R-CRAN-basefun >= 1.1.2 Requires: R-CRAN-variables >= 1.0.4 Requires: R-CRAN-Formula @@ -43,10 +44,11 @@ Requires: R-methods %description Formula-based user-interfaces to specific transformation models -implemented in package 'mlt'. Available models include Cox models, some -parametric survival models (Weibull, etc.), models for ordered categorical -variables, normal and non-normal (Box-Cox type) linear models, and -continuous outcome logistic regression (Lohse et al., 2017, +implemented in package 'mlt' (, +). Available models include Cox +models, some parametric survival models (Weibull, etc.), models for +ordered categorical variables, normal and non-normal (Box-Cox type) linear +models, and continuous outcome logistic regression (Lohse et al., 2017, ). The underlying theory is described in Hothorn et al. (2018) . An extension to transformation models for clustered data is provided (Barbanti and diff --git a/specs/R-CRAN-vivainsights.spec b/specs/R-CRAN-vivainsights.spec index b63c33b2d..9371b6b5a 100644 --- a/specs/R-CRAN-vivainsights.spec +++ b/specs/R-CRAN-vivainsights.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname vivainsights -%global packver 0.5.4 +%global packver 0.5.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.5.4 +Version: 0.5.5 Release: 1%{?dist}%{?buildtag} Summary: Analyze and Visualize Data from 'Microsoft Viva Insights' diff --git a/specs/R-CRAN-watson.spec b/specs/R-CRAN-watson.spec index 5e7d39706..f5f66dc63 100644 --- a/specs/R-CRAN-watson.spec +++ b/specs/R-CRAN-watson.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname watson -%global packver 0.4 +%global packver 0.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.4 +Version: 0.5 Release: 1%{?dist}%{?buildtag} Summary: Fitting and Simulating Mixtures of Watson Distributions @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.1.0 -Requires: R-core >= 3.1.0 +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 BuildRequires: R-CRAN-Tinflex >= 1.8 BuildRequires: R-CRAN-Rcpp >= 0.12.18 BuildRequires: R-CRAN-RcppArmadillo diff --git a/specs/R-CRAN-where.spec b/specs/R-CRAN-where.spec new file mode 100644 index 000000000..a3a0fb70a --- /dev/null +++ b/specs/R-CRAN-where.spec @@ -0,0 +1,50 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname where +%global packver 1.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: Vectorised Substitution and Evaluation + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildArch: noarch + +%description +Provides a clean syntax for vectorising the use of Non-Standard Evaluation +(NSE), for example in 'ggplot2', 'dplyr', or 'data.table'. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname}