diff --git a/specs/R-CRAN-CodelistGenerator.spec b/specs/R-CRAN-CodelistGenerator.spec index 126f94dfc..c55547df5 100644 --- a/specs/R-CRAN-CodelistGenerator.spec +++ b/specs/R-CRAN-CodelistGenerator.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname CodelistGenerator -%global packver 3.2.1 +%global packver 3.3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.2.1 +Version: 3.3.0 Release: 1%{?dist}%{?buildtag} Summary: Identify Relevant Clinical Codes and Evaluate Their Use @@ -32,9 +32,8 @@ BuildRequires: R-CRAN-visOmopResults >= 0.3.0 BuildRequires: R-CRAN-omopgenerics >= 0.2.2 BuildRequires: R-CRAN-purrr BuildRequires: R-CRAN-lubridate -BuildRequires: R-CRAN-RJSONIO BuildRequires: R-CRAN-vctrs -BuildRequires: R-CRAN-lifecycle +BuildRequires: R-CRAN-RJSONIO Requires: R-CRAN-cli >= 3.1.0 Requires: R-CRAN-checkmate >= 2.0.0 Requires: R-CRAN-magrittr >= 2.0.0 @@ -50,9 +49,8 @@ Requires: R-CRAN-visOmopResults >= 0.3.0 Requires: R-CRAN-omopgenerics >= 0.2.2 Requires: R-CRAN-purrr Requires: R-CRAN-lubridate -Requires: R-CRAN-RJSONIO Requires: R-CRAN-vctrs -Requires: R-CRAN-lifecycle +Requires: R-CRAN-RJSONIO %description Generate a candidate code list for the Observational Medical Outcomes diff --git a/specs/R-CRAN-CohortSurvival.spec b/specs/R-CRAN-CohortSurvival.spec index a2580be12..0b8b93a3b 100644 --- a/specs/R-CRAN-CohortSurvival.spec +++ b/specs/R-CRAN-CohortSurvival.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname CohortSurvival -%global packver 0.5.2 +%global packver 0.6.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.5.2 +Version: 0.6.0 Release: 1%{?dist}%{?buildtag} Summary: Estimate Survival from Common Data Model Cohorts @@ -17,6 +17,7 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel Requires: R-core BuildArch: noarch +BuildRequires: R-CRAN-survival >= 3.7.0 BuildRequires: R-CRAN-CDMConnector >= 1.3.0 BuildRequires: R-CRAN-rlang >= 0.4.11 BuildRequires: R-CRAN-visOmopResults >= 0.3.0 @@ -30,12 +31,13 @@ BuildRequires: R-CRAN-magrittr BuildRequires: R-CRAN-lubridate BuildRequires: R-CRAN-broom BuildRequires: R-CRAN-PatientProfiles -BuildRequires: R-CRAN-survival BuildRequires: R-CRAN-scales BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-tibble BuildRequires: R-CRAN-tidyr BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-lifecycle +Requires: R-CRAN-survival >= 3.7.0 Requires: R-CRAN-CDMConnector >= 1.3.0 Requires: R-CRAN-rlang >= 0.4.11 Requires: R-CRAN-visOmopResults >= 0.3.0 @@ -49,12 +51,12 @@ Requires: R-CRAN-magrittr Requires: R-CRAN-lubridate Requires: R-CRAN-broom Requires: R-CRAN-PatientProfiles -Requires: R-CRAN-survival Requires: R-CRAN-scales Requires: R-CRAN-stringr Requires: R-CRAN-tibble Requires: R-CRAN-tidyr Requires: R-CRAN-purrr +Requires: R-CRAN-lifecycle %description Estimate survival using data mapped to the Observational Medical Outcomes diff --git a/specs/R-CRAN-GeoModels.spec b/specs/R-CRAN-GeoModels.spec index bcd848bee..90c79ab0a 100644 --- a/specs/R-CRAN-GeoModels.spec +++ b/specs/R-CRAN-GeoModels.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname GeoModels -%global packver 2.0.7 +%global packver 2.0.8 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.7 +Version: 2.0.8 Release: 1%{?dist}%{?buildtag} Summary: Procedures for Gaussian and Non Gaussian Geostatistical (Large) Data Analysis @@ -35,7 +35,6 @@ BuildRequires: R-CRAN-lamW BuildRequires: R-CRAN-nabor BuildRequires: R-CRAN-hypergeo BuildRequires: R-CRAN-VGAM -BuildRequires: R-CRAN-data.table BuildRequires: R-CRAN-foreach BuildRequires: R-CRAN-future BuildRequires: R-CRAN-doFuture @@ -60,7 +59,6 @@ Requires: R-CRAN-lamW Requires: R-CRAN-nabor Requires: R-CRAN-hypergeo Requires: R-CRAN-VGAM -Requires: R-CRAN-data.table Requires: R-CRAN-foreach Requires: R-CRAN-future Requires: R-CRAN-doFuture diff --git a/specs/R-CRAN-PakPMICS2018.spec b/specs/R-CRAN-PakPMICS2018.spec index c00a39410..ee973a73b 100644 --- a/specs/R-CRAN-PakPMICS2018.spec +++ b/specs/R-CRAN-PakPMICS2018.spec @@ -1,15 +1,15 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname PakPMICS2018 -%global packver 1.1.0 +%global packver 1.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1.0 +Version: 1.2.0 Release: 1%{?dist}%{?buildtag} Summary: Multiple Indicator Cluster Survey (MICS) 2017-18 Data for Punjab, Pakistan -License: GPL-2 | GPL-3 +License: GPL-3 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz diff --git a/specs/R-CRAN-ProbBreed.spec b/specs/R-CRAN-ProbBreed.spec index c4888b144..063b51b9b 100644 --- a/specs/R-CRAN-ProbBreed.spec +++ b/specs/R-CRAN-ProbBreed.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ProbBreed -%global packver 1.0.4.3 +%global packver 1.0.4.4 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.4.3 +Version: 1.0.4.4 Release: 1%{?dist}%{?buildtag} Summary: Probability Theory for Selecting Candidates in Plant Breeding diff --git a/specs/R-CRAN-Rcssplot.spec b/specs/R-CRAN-Rcssplot.spec index b8407771f..fe3eb66f2 100644 --- a/specs/R-CRAN-Rcssplot.spec +++ b/specs/R-CRAN-Rcssplot.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname Rcssplot -%global packver 1.0.0 +%global packver 1.1.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0 +Version: 1.1.0 Release: 1%{?dist}%{?buildtag} Summary: Styling of Graphics using Cascading Style Sheets diff --git a/specs/R-CRAN-RoBTT.spec b/specs/R-CRAN-RoBTT.spec index be2547e12..1a7b51ff8 100644 --- a/specs/R-CRAN-RoBTT.spec +++ b/specs/R-CRAN-RoBTT.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname RoBTT -%global packver 1.3.0 +%global packver 1.3.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3.0 +Version: 1.3.1 Release: 1%{?dist}%{?buildtag} Summary: Robust Bayesian T-Test @@ -41,17 +41,19 @@ Requires: R-CRAN-Rdpack Requires: R-CRAN-rstantools %description -An implementation of Bayesian model-averaged t-test that allows users to -draw inference about the presence vs absence of the effect, heterogeneity -of variances, and outliers. The 'RoBTT' packages estimates model ensembles -of models created as a combination of the competing hypotheses and uses -Bayesian model-averaging to combine the models using posterior model -probabilities. Users can obtain the model-averaged posterior distributions -and inclusion Bayes factors which account for the uncertainty in the data -generating process (Maier et al., 2022, ). -Users can define a wide range of informative priors for all parameters of -interest. The package provides convenient functions for summary, -visualizations, and fit diagnostics. +An implementation of Bayesian model-averaged t-tests that allows users to +draw inferences about the presence versus absence of an effect, variance +heterogeneity, and potential outliers. The 'RoBTT' package estimates +ensembles of models created by combining competing hypotheses and applies +Bayesian model averaging using posterior model probabilities. Users can +obtain model-averaged posterior distributions and inclusion Bayes factors, +accounting for uncertainty in the data-generating process (Maier et al., +2024, ). The package also provides a +truncated likelihood version of the model-averaged t-test, enabling users +to exclude potential outliers without introducing bias (Godmann et al., +2024, ). Users can specify a wide range of +informative priors for all parameters of interest. The package offers +convenient functions for summary, visualization, and fit diagnostics. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-SegEnvIneq.spec b/specs/R-CRAN-SegEnvIneq.spec new file mode 100644 index 000000000..09d370c61 --- /dev/null +++ b/specs/R-CRAN-SegEnvIneq.spec @@ -0,0 +1,60 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname SegEnvIneq +%global packver 1.2 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.2 +Release: 1%{?dist}%{?buildtag} +Summary: Environmental Inequality Indices Based on Segregation Measures + +License: GPL-2 | GPL-3 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.4.0 +Requires: R-core >= 4.4.0 +BuildArch: noarch +BuildRequires: R-CRAN-OasisR >= 3.1.1 +BuildRequires: R-CRAN-spdep >= 1.3.6 +BuildRequires: R-CRAN-sf >= 1.0.16 +BuildRequires: R-CRAN-outliers >= 0.15 +Requires: R-CRAN-OasisR >= 3.1.1 +Requires: R-CRAN-spdep >= 1.3.6 +Requires: R-CRAN-sf >= 1.0.16 +Requires: R-CRAN-outliers >= 0.15 + +%description +A set of segregation-based indices and randomization methods to make +robust environmental inequality assessments, as described in Schaeffer and +Tivadar (2019) "Measuring Environmental Inequalities: Insights from the +Residential Segregation Literature" . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-UPG.spec b/specs/R-CRAN-UPG.spec index ca0d136b7..2c905e995 100644 --- a/specs/R-CRAN-UPG.spec +++ b/specs/R-CRAN-UPG.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname UPG -%global packver 0.3.4 +%global packver 0.3.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.3.4 +Version: 0.3.5 Release: 1%{?dist}%{?buildtag} Summary: Efficient Bayesian Algorithms for Binary and Categorical Data Regression Models diff --git a/specs/R-CRAN-bootES.spec b/specs/R-CRAN-bootES.spec index 00b77a72d..bc04de4b2 100644 --- a/specs/R-CRAN-bootES.spec +++ b/specs/R-CRAN-bootES.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname bootES -%global packver 1.3.0 +%global packver 1.3.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3.0 +Version: 1.3.1 Release: 1%{?dist}%{?buildtag} Summary: Bootstrap Confidence Intervals on Effect Sizes diff --git a/specs/R-CRAN-ctrdata.spec b/specs/R-CRAN-ctrdata.spec index ac4d5d40f..30570d131 100644 --- a/specs/R-CRAN-ctrdata.spec +++ b/specs/R-CRAN-ctrdata.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ctrdata -%global packver 1.19.4 +%global packver 1.19.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.19.4 +Version: 1.19.5 Release: 1%{?dist}%{?buildtag} Summary: Retrieve and Analyze Clinical Trials in Public Registers @@ -18,7 +18,7 @@ BuildRequires: R-devel Requires: R-core BuildArch: noarch BuildRequires: R-CRAN-curl >= 5.1.0 -BuildRequires: R-CRAN-nodbi >= 0.10.0 +BuildRequires: R-CRAN-nodbi >= 0.10.7 BuildRequires: R-CRAN-jsonlite BuildRequires: R-CRAN-httr BuildRequires: R-CRAN-clipr @@ -34,7 +34,7 @@ BuildRequires: R-CRAN-readr BuildRequires: R-CRAN-digest BuildRequires: R-CRAN-countrycode Requires: R-CRAN-curl >= 5.1.0 -Requires: R-CRAN-nodbi >= 0.10.0 +Requires: R-CRAN-nodbi >= 0.10.7 Requires: R-CRAN-jsonlite Requires: R-CRAN-httr Requires: R-CRAN-clipr diff --git a/specs/R-CRAN-data.table.threads.spec b/specs/R-CRAN-data.table.threads.spec index 7afe67d13..995f8a4a5 100644 --- a/specs/R-CRAN-data.table.threads.spec +++ b/specs/R-CRAN-data.table.threads.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname data.table.threads -%global packver 1.0.0 +%global packver 1.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0 +Version: 1.0.1 Release: 1%{?dist}%{?buildtag} Summary: Analyze Multi-Threading Performance for 'data.table' Functions diff --git a/specs/R-CRAN-ggreveal.spec b/specs/R-CRAN-ggreveal.spec index 73557ef3d..85a6290f4 100644 --- a/specs/R-CRAN-ggreveal.spec +++ b/specs/R-CRAN-ggreveal.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ggreveal -%global packver 0.1.3 +%global packver 0.1.4 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.3 +Version: 0.1.4 Release: 1%{?dist}%{?buildtag} Summary: Reveal a 'ggplot' Incrementally @@ -21,7 +21,6 @@ BuildRequires: R-CRAN-cli BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-ggplotify -BuildRequires: R-CRAN-lemon BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-tidyr @@ -29,7 +28,6 @@ Requires: R-CRAN-cli Requires: R-CRAN-dplyr Requires: R-CRAN-ggplot2 Requires: R-CRAN-ggplotify -Requires: R-CRAN-lemon Requires: R-CRAN-rlang Requires: R-CRAN-stringr Requires: R-CRAN-tidyr diff --git a/specs/R-CRAN-inline.spec b/specs/R-CRAN-inline.spec index fcbd8314b..66f2511bb 100644 --- a/specs/R-CRAN-inline.spec +++ b/specs/R-CRAN-inline.spec @@ -1,10 +1,11 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname inline -%global packver 0.3.19 +%global packver 0.3.20 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.3.19 +Version: 0.3.20 Release: 1%{?dist}%{?buildtag} Summary: Functions to Inline C, C++, Fortran Function Calls from R @@ -32,6 +33,8 @@ find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; diff --git a/specs/R-CRAN-isopam.spec b/specs/R-CRAN-isopam.spec index 3c60302de..e16ad44fb 100644 --- a/specs/R-CRAN-isopam.spec +++ b/specs/R-CRAN-isopam.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname isopam -%global packver 2.0 +%global packver 3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0 +Version: 3.0 Release: 1%{?dist}%{?buildtag} Summary: Clustering of Sites with Species Data @@ -19,9 +19,11 @@ Requires: R-core >= 3.5.0 BuildArch: noarch BuildRequires: R-CRAN-vegan BuildRequires: R-CRAN-cluster +BuildRequires: R-CRAN-fastkmedoids BuildRequires: R-CRAN-future BuildRequires: R-CRAN-future.apply BuildRequires: R-methods +BuildRequires: R-CRAN-ps BuildRequires: R-grDevices BuildRequires: R-graphics BuildRequires: R-stats @@ -31,9 +33,11 @@ BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-tibble Requires: R-CRAN-vegan Requires: R-CRAN-cluster +Requires: R-CRAN-fastkmedoids Requires: R-CRAN-future Requires: R-CRAN-future.apply Requires: R-methods +Requires: R-CRAN-ps Requires: R-grDevices Requires: R-graphics Requires: R-stats diff --git a/specs/R-CRAN-laminr.spec b/specs/R-CRAN-laminr.spec new file mode 100644 index 000000000..db5cd53a7 --- /dev/null +++ b/specs/R-CRAN-laminr.spec @@ -0,0 +1,63 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname laminr +%global packver 0.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Interface for 'LaminDB' + +License: Apache License (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.0.0 +Requires: R-core >= 4.0.0 +BuildArch: noarch +BuildRequires: R-CRAN-cli +BuildRequires: R-CRAN-httr +BuildRequires: R-CRAN-jsonlite +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-R6 +BuildRequires: R-CRAN-rlang +Requires: R-CRAN-cli +Requires: R-CRAN-httr +Requires: R-CRAN-jsonlite +Requires: R-CRAN-purrr +Requires: R-CRAN-R6 +Requires: R-CRAN-rlang + +%description +Interact with 'LaminDB'. 'LaminDB' is an open-source data framework for +biology. This package allows you to query and download data from 'LaminDB' +instances. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-leafletZH.spec b/specs/R-CRAN-leafletZH.spec index 6430a5eeb..329fb7380 100644 --- a/specs/R-CRAN-leafletZH.spec +++ b/specs/R-CRAN-leafletZH.spec @@ -1,13 +1,13 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname leafletZH -%global packver 0.1.0 +%global packver 0.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.1.1 Release: 1%{?dist}%{?buildtag} -Summary: Adds a Chinese Choropleth Leaflet Map +Summary: Chinese Leaflet Map Relate Operation License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} @@ -16,27 +16,37 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.0.0 Requires: R-core >= 4.0.0 -BuildArch: noarch BuildRequires: R-CRAN-geojsonsf +BuildRequires: R-CRAN-geosphere +BuildRequires: R-grDevices BuildRequires: R-CRAN-htmltools BuildRequires: R-CRAN-htmlwidgets BuildRequires: R-CRAN-leaflet BuildRequires: R-CRAN-leaflet.extras +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-Rcpp +BuildRequires: R-CRAN-scales BuildRequires: R-CRAN-sf BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-RcppArmadillo Requires: R-CRAN-geojsonsf +Requires: R-CRAN-geosphere +Requires: R-grDevices Requires: R-CRAN-htmltools Requires: R-CRAN-htmlwidgets Requires: R-CRAN-leaflet Requires: R-CRAN-leaflet.extras +Requires: R-CRAN-purrr +Requires: R-CRAN-Rcpp +Requires: R-CRAN-scales Requires: R-CRAN-sf Requires: R-CRAN-stringr %description Provides 'sf' data for Chinese provinces and cities, methods for plotting -shape maps of Chinese provinces and cities, and a layer for 'leaflet' with -Gaode tiles. It is designed to facilitate geographical data visualization -in China. +shape maps of Chinese provinces and cities, Convert Coordinates Between +Different Systems, and a layer for 'leaflet' with Gaode tiles. It is +designed to facilitate geographical data visualization in China. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-lemon.spec b/specs/R-CRAN-lemon.spec index 897f04ea9..63d3cb23a 100644 --- a/specs/R-CRAN-lemon.spec +++ b/specs/R-CRAN-lemon.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname lemon -%global packver 0.4.9 +%global packver 0.5.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.4.9 +Version: 0.5.0 Release: 1%{?dist}%{?buildtag} Summary: Freshing Up your 'ggplot2' Plots diff --git a/specs/R-CRAN-maditr.spec b/specs/R-CRAN-maditr.spec index bccc3374f..ce2123ff9 100644 --- a/specs/R-CRAN-maditr.spec +++ b/specs/R-CRAN-maditr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname maditr -%global packver 0.8.4 +%global packver 0.8.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.8.4 +Version: 0.8.5 Release: 1%{?dist}%{?buildtag} Summary: Fast Data Aggregation, Modification, and Filtering with Pipes and 'data.table' @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.3.0 -Requires: R-core >= 3.3.0 +BuildRequires: R-devel >= 4.4.0 +Requires: R-core >= 4.4.0 BuildArch: noarch BuildRequires: R-CRAN-magrittr >= 1.5 BuildRequires: R-CRAN-data.table >= 1.12.6 diff --git a/specs/R-CRAN-maicplus.spec b/specs/R-CRAN-maicplus.spec new file mode 100644 index 000000000..ce9e55af5 --- /dev/null +++ b/specs/R-CRAN-maicplus.spec @@ -0,0 +1,74 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname maicplus +%global packver 0.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Matching Adjusted Indirect Comparison + +License: Apache License 2.0 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.6 +Requires: R-core >= 3.6 +BuildArch: noarch +BuildRequires: R-graphics +BuildRequires: R-grDevices +BuildRequires: R-stats +BuildRequires: R-CRAN-survival +BuildRequires: R-CRAN-lubridate +BuildRequires: R-CRAN-DescTools +BuildRequires: R-CRAN-MASS +BuildRequires: R-CRAN-boot +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-lmtest +BuildRequires: R-CRAN-sandwich +Requires: R-graphics +Requires: R-grDevices +Requires: R-stats +Requires: R-CRAN-survival +Requires: R-CRAN-lubridate +Requires: R-CRAN-DescTools +Requires: R-CRAN-MASS +Requires: R-CRAN-boot +Requires: R-CRAN-stringr +Requires: R-CRAN-lmtest +Requires: R-CRAN-sandwich + +%description +Facilitates performing matching adjusted indirect comparison (MAIC) +analysis where the endpoint of interest is either time-to-event (e.g. +overall survival) or binary (e.g. objective tumor response). The method is +described by Signorovitch et al (2012) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-maps.spec b/specs/R-CRAN-maps.spec index 3248e360d..61677be0b 100644 --- a/specs/R-CRAN-maps.spec +++ b/specs/R-CRAN-maps.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname maps -%global packver 3.4.2 +%global packver 3.4.2.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.4.2 +Version: 3.4.2.1 Release: 1%{?dist}%{?buildtag} Summary: Draw Geographical Maps diff --git a/specs/R-CRAN-nodbi.spec b/specs/R-CRAN-nodbi.spec index 0368c5e9e..5ae9dcec7 100644 --- a/specs/R-CRAN-nodbi.spec +++ b/specs/R-CRAN-nodbi.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname nodbi -%global packver 0.10.7 +%global packver 0.11.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.10.7 +Version: 0.11.0 Release: 1%{?dist}%{?buildtag} Summary: 'NoSQL' Database Connector diff --git a/specs/R-CRAN-ottr.spec b/specs/R-CRAN-ottr.spec index a74b9e57b..2fb47419f 100644 --- a/specs/R-CRAN-ottr.spec +++ b/specs/R-CRAN-ottr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ottr -%global packver 1.5.0 +%global packver 1.5.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.5.0 +Version: 1.5.1 Release: 1%{?dist}%{?buildtag} Summary: An R Autograding Extension for Otter-Grader diff --git a/specs/R-CRAN-r2pmml.spec b/specs/R-CRAN-r2pmml.spec index 4034d48ab..d48999b4b 100644 --- a/specs/R-CRAN-r2pmml.spec +++ b/specs/R-CRAN-r2pmml.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname r2pmml -%global packver 0.28.0 +%global packver 0.29.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.28.0 +Version: 0.29.0 Release: 1%{?dist}%{?buildtag} Summary: Convert R Models to PMML diff --git a/specs/R-CRAN-sampcompR.spec b/specs/R-CRAN-sampcompR.spec index a3038a5a3..e02fa5291 100644 --- a/specs/R-CRAN-sampcompR.spec +++ b/specs/R-CRAN-sampcompR.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname sampcompR -%global packver 0.2.3 +%global packver 0.2.4 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.3 +Version: 0.2.4 Release: 1%{?dist}%{?buildtag} Summary: Comparing and Visualizing Differences Between Surveys @@ -18,7 +18,6 @@ BuildRequires: R-devel Requires: R-core BuildArch: noarch BuildRequires: R-CRAN-boot -BuildRequires: R-CRAN-boot.pval BuildRequires: R-CRAN-data.table BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-forcats @@ -39,7 +38,6 @@ BuildRequires: R-CRAN-svrep BuildRequires: R-CRAN-tibble BuildRequires: R-CRAN-tidyr Requires: R-CRAN-boot -Requires: R-CRAN-boot.pval Requires: R-CRAN-data.table Requires: R-CRAN-dplyr Requires: R-CRAN-forcats @@ -75,7 +73,7 @@ plotted and outputted as a table. For more detailed information on the methods and example use see Rohr, B., Silber, H., & Felderer, B. (2024). „Comparing the Accuracy of Univariate, Bivariate, and Multivariate Estimates across Probability and Non-Probability Surveys with Population -Benchmarks“ . +Benchmarks“ . %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-scoringfunctions.spec b/specs/R-CRAN-scoringfunctions.spec index 56620668e..9c5a892f8 100644 --- a/specs/R-CRAN-scoringfunctions.spec +++ b/specs/R-CRAN-scoringfunctions.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname scoringfunctions -%global packver 0.0.6 +%global packver 0.0.7 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.0.6 +Version: 0.0.7 Release: 1%{?dist}%{?buildtag} Summary: A Collection of Scoring Functions for Assessing Point Forecasts diff --git a/specs/R-CRAN-singleRcapture.spec b/specs/R-CRAN-singleRcapture.spec index a50e03623..a305c1d21 100644 --- a/specs/R-CRAN-singleRcapture.spec +++ b/specs/R-CRAN-singleRcapture.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname singleRcapture -%global packver 0.2.1.2 +%global packver 0.2.1.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.1.2 +Version: 0.2.1.3 Release: 1%{?dist}%{?buildtag} Summary: Single-Source Capture-Recapture Models diff --git a/specs/R-CRAN-superb.spec b/specs/R-CRAN-superb.spec index ba6ff07cc..88fd70244 100644 --- a/specs/R-CRAN-superb.spec +++ b/specs/R-CRAN-superb.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname superb -%global packver 0.95.15 +%global packver 0.95.19 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.95.15 +Version: 0.95.19 Release: 1%{?dist}%{?buildtag} Summary: Summary Plots with Adjusted Error Bars @@ -14,33 +14,35 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.5.0 -Requires: R-core >= 3.5.0 +BuildRequires: R-devel >= 4.1.0 +Requires: R-core >= 4.1.0 BuildArch: noarch -BuildRequires: R-CRAN-ggplot2 >= 3.1.0 +BuildRequires: R-CRAN-ggplot2 >= 3.5.0 BuildRequires: R-CRAN-plyr >= 1.8.4 BuildRequires: R-CRAN-Rdpack >= 0.7 BuildRequires: R-CRAN-lsr >= 0.5 -BuildRequires: R-CRAN-foreign -BuildRequires: R-CRAN-MASS BuildRequires: R-methods +BuildRequires: R-utils BuildRequires: R-stats +BuildRequires: R-CRAN-MASS +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-foreign BuildRequires: R-CRAN-shiny BuildRequires: R-CRAN-shinyBS -BuildRequires: R-CRAN-stringr -BuildRequires: R-utils -Requires: R-CRAN-ggplot2 >= 3.1.0 +BuildRequires: R-CRAN-rrapply +Requires: R-CRAN-ggplot2 >= 3.5.0 Requires: R-CRAN-plyr >= 1.8.4 Requires: R-CRAN-Rdpack >= 0.7 Requires: R-CRAN-lsr >= 0.5 -Requires: R-CRAN-foreign -Requires: R-CRAN-MASS Requires: R-methods +Requires: R-utils Requires: R-stats +Requires: R-CRAN-MASS +Requires: R-CRAN-stringr +Requires: R-CRAN-foreign Requires: R-CRAN-shiny Requires: R-CRAN-shinyBS -Requires: R-CRAN-stringr -Requires: R-utils +Requires: R-CRAN-rrapply %description Computes standard error and confidence interval of various descriptive diff --git a/specs/R-CRAN-viewscape.spec b/specs/R-CRAN-viewscape.spec index a815e088a..df8dd99c9 100644 --- a/specs/R-CRAN-viewscape.spec +++ b/specs/R-CRAN-viewscape.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname viewscape -%global packver 2.0.0 +%global packver 2.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.0 +Version: 2.0.1 Release: 1%{?dist}%{?buildtag} Summary: Viewscape Analysis