diff --git a/specs/R-CRAN-AID.spec b/specs/R-CRAN-AID.spec index 3ae9fbe56f..12f2661887 100644 --- a/specs/R-CRAN-AID.spec +++ b/specs/R-CRAN-AID.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname AID -%global packver 2.9 +%global packver 3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.9 +Version: 3.0 Release: 1%{?dist}%{?buildtag} Summary: Box-Cox Power Transformation diff --git a/specs/R-CRAN-AOboot.spec b/specs/R-CRAN-AOboot.spec index 30a93f7a92..a646701b57 100644 --- a/specs/R-CRAN-AOboot.spec +++ b/specs/R-CRAN-AOboot.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname AOboot -%global packver 0.1.0 +%global packver 0.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.1.1 Release: 1%{?dist}%{?buildtag} Summary: Bootstrapping in Different One-Way and Two-Way ANOVA diff --git a/specs/R-CRAN-AllelicSeries.spec b/specs/R-CRAN-AllelicSeries.spec index a124c58891..2f6a4c183f 100644 --- a/specs/R-CRAN-AllelicSeries.spec +++ b/specs/R-CRAN-AllelicSeries.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname AllelicSeries -%global packver 0.1.0.2 +%global packver 0.1.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0.2 +Version: 0.1.1.1 Release: 1%{?dist}%{?buildtag} Summary: Allelic Series Test diff --git a/specs/R-CRAN-DrugExposureDiagnostics.spec b/specs/R-CRAN-DrugExposureDiagnostics.spec index 47b155d047..11609d7ad6 100644 --- a/specs/R-CRAN-DrugExposureDiagnostics.spec +++ b/specs/R-CRAN-DrugExposureDiagnostics.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname DrugExposureDiagnostics -%global packver 1.0.9 +%global packver 1.0.10 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.9 +Version: 1.0.10 Release: 1%{?dist}%{?buildtag} Summary: Diagnostics for OMOP Common Data Model Drug Records diff --git a/specs/R-CRAN-GWlasso.spec b/specs/R-CRAN-GWlasso.spec new file mode 100644 index 0000000000..d4aa8fd3e0 --- /dev/null +++ b/specs/R-CRAN-GWlasso.spec @@ -0,0 +1,77 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname GWlasso +%global packver 1.0.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.1 +Release: 1%{?dist}%{?buildtag} +Summary: Geographically Weighted Lasso + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-ggside +BuildRequires: R-CRAN-glmnet +BuildRequires: R-CRAN-GWmodel +BuildRequires: R-CRAN-lifecycle +BuildRequires: R-CRAN-magrittr +BuildRequires: R-methods +BuildRequires: R-CRAN-progress +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-sf +BuildRequires: R-CRAN-tidyr +Requires: R-CRAN-dplyr +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-ggside +Requires: R-CRAN-glmnet +Requires: R-CRAN-GWmodel +Requires: R-CRAN-lifecycle +Requires: R-CRAN-magrittr +Requires: R-methods +Requires: R-CRAN-progress +Requires: R-CRAN-rlang +Requires: R-CRAN-sf +Requires: R-CRAN-tidyr + +%description +Performs geographically weighted Lasso regressions. Find optimal +bandwidth, fit a geographically weighted lasso or ridge regression, and +make predictions. These methods are specially well suited for ecological +inferences. Bandwidth selection algorithm is from A. Comber and P. Harris +(2018) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-LTFHPlus.spec b/specs/R-CRAN-LTFHPlus.spec index d1d5993d13..dc5c99e105 100644 --- a/specs/R-CRAN-LTFHPlus.spec +++ b/specs/R-CRAN-LTFHPlus.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname LTFHPlus -%global packver 2.1.1 +%global packver 2.1.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.1.1 +Version: 2.1.2 Release: 1%{?dist}%{?buildtag} Summary: Implementation of LT-FH++ @@ -52,12 +52,12 @@ Implementation of LT-FH++, an extension of the liability threshold family history (LT-FH) model. LT-FH++ uses a Gibbs sampler for sampling from the truncated multivariate normal distribution and allows for flexible family structures. LT-FH++ was first described in Pedersen, Emil M., et al. -(2022) as an -extension to LT-FH with more flexible family structures, and again as the -age-dependent liability threshold (ADuLT) model Pedersen, Emil M., et al. -(2023) as an -alternative to traditional time-to-event genome-wide association studies, -where family history was not considered. +(2022) as an extension to LT-FH with more +flexible family structures, and again as the age-dependent liability +threshold (ADuLT) model Pedersen, Emil M., et al. (2023) + as an alternative to traditional +time-to-event genome-wide association studies, where family history was +not considered. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-MSEtool.spec b/specs/R-CRAN-MSEtool.spec index ad10ea185c..924bf2ed24 100644 --- a/specs/R-CRAN-MSEtool.spec +++ b/specs/R-CRAN-MSEtool.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname MSEtool -%global packver 3.7.2 +%global packver 3.7.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.7.2 +Version: 3.7.3 Release: 1%{?dist}%{?buildtag} Summary: Management Strategy Evaluation Toolkit diff --git a/specs/R-CRAN-MVar.pt.spec b/specs/R-CRAN-MVar.pt.spec index a918001aae..ee5aab4594 100644 --- a/specs/R-CRAN-MVar.pt.spec +++ b/specs/R-CRAN-MVar.pt.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname MVar.pt -%global packver 2.2.4 +%global packver 2.2.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.2.4 +Version: 2.2.5 Release: 1%{?dist}%{?buildtag} Summary: Analise multivariada (brazilian portuguese) diff --git a/specs/R-CRAN-MVar.spec b/specs/R-CRAN-MVar.spec index 7f3ab76f05..f292ab4ba8 100644 --- a/specs/R-CRAN-MVar.spec +++ b/specs/R-CRAN-MVar.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname MVar -%global packver 2.2.4 +%global packver 2.2.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.2.4 +Version: 2.2.5 Release: 1%{?dist}%{?buildtag} Summary: Multivariate Analysis diff --git a/specs/R-CRAN-NGLVieweR.spec b/specs/R-CRAN-NGLVieweR.spec index f893b5f71f..0380d96ab2 100644 --- a/specs/R-CRAN-NGLVieweR.spec +++ b/specs/R-CRAN-NGLVieweR.spec @@ -1,10 +1,11 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname NGLVieweR -%global packver 1.3.1 +%global packver 1.4.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3.1 +Version: 1.4.0 Release: 1%{?dist}%{?buildtag} Summary: Interactive 3D Visualization of Molecular Structures @@ -40,6 +41,8 @@ find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; diff --git a/specs/R-CRAN-OlinkAnalyze.spec b/specs/R-CRAN-OlinkAnalyze.spec index f4f9acc662..81a3edf06f 100644 --- a/specs/R-CRAN-OlinkAnalyze.spec +++ b/specs/R-CRAN-OlinkAnalyze.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname OlinkAnalyze -%global packver 4.0.1 +%global packver 4.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 4.0.1 +Version: 4.0.2 Release: 1%{?dist}%{?buildtag} Summary: Facilitate Analysis of Proteomic Data from Olink diff --git a/specs/R-CRAN-REDCapCAST.spec b/specs/R-CRAN-REDCapCAST.spec index 48e20c47d3..eba798d32b 100644 --- a/specs/R-CRAN-REDCapCAST.spec +++ b/specs/R-CRAN-REDCapCAST.spec @@ -1,13 +1,13 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname REDCapCAST -%global packver 24.10.3 +%global packver 24.11.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 24.10.3 +Version: 24.11.2 Release: 1%{?dist}%{?buildtag} -Summary: REDCap Castellated Data Handling +Summary: REDCap Metadata Casting and Castellated Data Handling License: GPL (>= 3) URL: https://cran.r-project.org/package=%{packname} @@ -31,6 +31,12 @@ BuildRequires: R-CRAN-zip BuildRequires: R-CRAN-assertthat BuildRequires: R-CRAN-openxlsx2 BuildRequires: R-CRAN-readODS +BuildRequires: R-CRAN-forcats +BuildRequires: R-CRAN-vctrs +BuildRequires: R-CRAN-gt +BuildRequires: R-CRAN-bslib +BuildRequires: R-CRAN-here +BuildRequires: R-CRAN-glue Requires: R-CRAN-dplyr Requires: R-CRAN-REDCapR Requires: R-CRAN-tidyr @@ -45,21 +51,28 @@ Requires: R-CRAN-zip Requires: R-CRAN-assertthat Requires: R-CRAN-openxlsx2 Requires: R-CRAN-readODS +Requires: R-CRAN-forcats +Requires: R-CRAN-vctrs +Requires: R-CRAN-gt +Requires: R-CRAN-bslib +Requires: R-CRAN-here +Requires: R-CRAN-glue %description -Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See -. 'REDCap' database casting and -handling of castellated data when using repeated instruments and -longitudinal projects. Keeps a focused data export approach, by allowing -to only export required data from the database. 'REDCap' (Research -Electronic Data Capture) is a secure, web-based software platform designed -to support data capture for research studies, providing 1) an intuitive -interface for validated data capture; 2) audit trails for tracking data -manipulation and export procedures; 3) automated export procedures for -seamless data downloads to common statistical packages; and 4) procedures -for data integration and interoperability with external sources (Harris et -al (2009) ; Harris et al (2019) -). +Casting metadata for REDCap database creation and handling of castellated +data using repeated instruments and longitudinal projects in 'REDCap'. +Keeps a focused data export approach, by allowing to only export required +data from the database. Also for casting new REDCap databases based on +datasets from other sources. Originally forked from the R part of +'REDCapRITS' by Paul Egeler. See . +'REDCap' (Research Electronic Data Capture) is a secure, web-based +software platform designed to support data capture for research studies, +providing 1) an intuitive interface for validated data capture; 2) audit +trails for tracking data manipulation and export procedures; 3) automated +export procedures for seamless data downloads to common statistical +packages; and 4) procedures for data integration and interoperability with +external sources (Harris et al (2009) ; +Harris et al (2019) ). %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-Rveg.spec b/specs/R-CRAN-Rveg.spec index 1ab13c21fb..6f10d4fa7e 100644 --- a/specs/R-CRAN-Rveg.spec +++ b/specs/R-CRAN-Rveg.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname Rveg -%global packver 0.1.5 +%global packver 0.1.6 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.5 +Version: 0.1.6 Release: 1%{?dist}%{?buildtag} Summary: Digitization of Phytosociological Relevés diff --git a/specs/R-CRAN-SVMMaj.spec b/specs/R-CRAN-SVMMaj.spec index 7438d5324b..3869c540b4 100644 --- a/specs/R-CRAN-SVMMaj.spec +++ b/specs/R-CRAN-SVMMaj.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname SVMMaj -%global packver 0.2.9.2 +%global packver 0.2.9.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.9.2 +Version: 0.2.9.3 Release: 1%{?dist}%{?buildtag} Summary: Implementation of the SVM-Maj Algorithm @@ -19,6 +19,7 @@ Requires: R-core >= 2.13.0 BuildArch: noarch BuildRequires: R-stats BuildRequires: R-graphics +BuildRequires: R-parallel BuildRequires: R-CRAN-reshape2 BuildRequires: R-CRAN-scales BuildRequires: R-CRAN-gridExtra @@ -27,6 +28,7 @@ BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-kernlab Requires: R-stats Requires: R-graphics +Requires: R-parallel Requires: R-CRAN-reshape2 Requires: R-CRAN-scales Requires: R-CRAN-gridExtra diff --git a/specs/R-CRAN-IRISMustangMetrics.spec b/specs/R-CRAN-anominate.spec similarity index 51% rename from specs/R-CRAN-IRISMustangMetrics.spec rename to specs/R-CRAN-anominate.spec index 61d207f168..bb2e9ca976 100644 --- a/specs/R-CRAN-IRISMustangMetrics.spec +++ b/specs/R-CRAN-anominate.spec @@ -1,49 +1,44 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi -%global packname IRISMustangMetrics -%global packver 2.4.6 +%global packname anominate +%global packver 0.7 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.4.6 +Version: 0.7 Release: 1%{?dist}%{?buildtag} -Summary: Statistics and Metrics for Seismic Data +Summary: Alpha-NOMINATE Ideal Point Estimator -License: GPL (>= 2) +License: GPL-2 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.2.0 -Requires: R-core >= 3.2.0 -BuildArch: noarch -BuildRequires: R-CRAN-IRISSeismic >= 1.3.0 -BuildRequires: R-CRAN-seismicRoll >= 1.1.4 -BuildRequires: R-CRAN-dplyr >= 0.4.3 -BuildRequires: R-methods -BuildRequires: R-CRAN-RCurl -BuildRequires: R-CRAN-signal -BuildRequires: R-CRAN-stringr -BuildRequires: R-CRAN-XML +BuildRequires: R-devel +Requires: R-core BuildRequires: R-stats -BuildRequires: R-CRAN-pracma -Requires: R-CRAN-IRISSeismic >= 1.3.0 -Requires: R-CRAN-seismicRoll >= 1.1.4 -Requires: R-CRAN-dplyr >= 0.4.3 -Requires: R-methods -Requires: R-CRAN-RCurl -Requires: R-CRAN-signal -Requires: R-CRAN-stringr -Requires: R-CRAN-XML +BuildRequires: R-CRAN-coda +BuildRequires: R-CRAN-wnominate +BuildRequires: R-CRAN-pscl +BuildRequires: R-CRAN-MCMCpack Requires: R-stats -Requires: R-CRAN-pracma +Requires: R-CRAN-coda +Requires: R-CRAN-wnominate +Requires: R-CRAN-pscl +Requires: R-CRAN-MCMCpack %description -Classes and functions for metrics calculation as part of the 'IRIS DMC -MUSTANG' project. The functionality in this package builds upon the base -classes of the 'IRISSeismic' package. Metrics include basic statistics as -well as higher level 'health' metrics that can help identify problematic -seismometers. +Provides functions to estimate and interpret the alpha-NOMINATE ideal +point model developed in Carroll et al. (2013, ). +alpha-NOMINATE extends traditional spatial voting frameworks by allowing +for a mixture of Gaussian and quadratic utility functions, providing +flexibility in modeling political actors' preferences. The package uses +Markov Chain Monte Carlo (MCMC) methods for parameter estimation, +supporting robust inference about individuals' ideological positions and +the shape of their utility functions. It also contains functions to +simulate data from the model and to calculate the probability of a vote +passing given the ideal points of the legislators/voters and the estimated +location of the choice alternatives. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-bamdit.spec b/specs/R-CRAN-bamdit.spec index 32a76bf053..742a9ab096 100644 --- a/specs/R-CRAN-bamdit.spec +++ b/specs/R-CRAN-bamdit.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname bamdit -%global packver 3.4.2 +%global packver 3.4.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.4.2 +Version: 3.4.3 Release: 1%{?dist}%{?buildtag} Summary: Bayesian Meta-Analysis of Diagnostic Test Data diff --git a/specs/R-CRAN-bayesammi.spec b/specs/R-CRAN-bayesammi.spec index 04f23d8ce4..bda5e94a8b 100644 --- a/specs/R-CRAN-bayesammi.spec +++ b/specs/R-CRAN-bayesammi.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname bayesammi -%global packver 0.2.0 +%global packver 0.3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.0 +Version: 0.3.0 Release: 1%{?dist}%{?buildtag} Summary: Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model @@ -19,10 +19,13 @@ Requires: R-core >= 3.1 BuildArch: noarch BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-ggrepel +BuildRequires: R-CRAN-ks BuildRequires: R-CRAN-lme4 BuildRequires: R-CRAN-magrittr BuildRequires: R-CRAN-MASS BuildRequires: R-CRAN-mvtnorm +BuildRequires: R-CRAN-purrr BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-rstiefel BuildRequires: R-CRAN-scales @@ -32,10 +35,13 @@ BuildRequires: R-CRAN-tidyr BuildRequires: R-CRAN-tmvtnorm Requires: R-CRAN-dplyr Requires: R-CRAN-ggplot2 +Requires: R-CRAN-ggrepel +Requires: R-CRAN-ks Requires: R-CRAN-lme4 Requires: R-CRAN-magrittr Requires: R-CRAN-MASS Requires: R-CRAN-mvtnorm +Requires: R-CRAN-purrr Requires: R-CRAN-rlang Requires: R-CRAN-rstiefel Requires: R-CRAN-scales diff --git a/specs/R-CRAN-care4cmodel.spec b/specs/R-CRAN-care4cmodel.spec index 53847a12a6..51e7e7113a 100644 --- a/specs/R-CRAN-care4cmodel.spec +++ b/specs/R-CRAN-care4cmodel.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname care4cmodel -%global packver 1.0.2 +%global packver 1.0.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.2 +Version: 1.0.3 Release: 1%{?dist}%{?buildtag} Summary: Carbon-Related Assessment of Silvicultural Concepts diff --git a/specs/R-CRAN-cvasi.spec b/specs/R-CRAN-cvasi.spec index bf680d50c5..3ab9c2cc3a 100644 --- a/specs/R-CRAN-cvasi.spec +++ b/specs/R-CRAN-cvasi.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname cvasi -%global packver 1.2.0 +%global packver 1.3.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2.0 +Version: 1.3.1 Release: 1%{?dist}%{?buildtag} Summary: Calibration, Validation, and Simulation of TKTD Models @@ -17,7 +17,6 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildRequires: R-CRAN-cli -BuildRequires: R-CRAN-glue BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-dplyr @@ -34,13 +33,10 @@ BuildRequires: R-CRAN-gridExtra BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-GGally BuildRequires: R-CRAN-deSolve -BuildRequires: R-CRAN-lemna BuildRequires: R-CRAN-lubridate -BuildRequires: R-CRAN-attempt BuildRequires: R-CRAN-units BuildRequires: R-CRAN-lifecycle Requires: R-CRAN-cli -Requires: R-CRAN-glue Requires: R-CRAN-rlang Requires: R-CRAN-stringr Requires: R-CRAN-dplyr @@ -57,9 +53,7 @@ Requires: R-CRAN-gridExtra Requires: R-CRAN-ggplot2 Requires: R-CRAN-GGally Requires: R-CRAN-deSolve -Requires: R-CRAN-lemna Requires: R-CRAN-lubridate -Requires: R-CRAN-attempt Requires: R-CRAN-units Requires: R-CRAN-lifecycle diff --git a/specs/R-CRAN-dad.spec b/specs/R-CRAN-dad.spec index 5f0a79a691..4febc26192 100644 --- a/specs/R-CRAN-dad.spec +++ b/specs/R-CRAN-dad.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname dad -%global packver 4.1.2 +%global packver 4.1.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 4.1.2 +Version: 4.1.5 Release: 1%{?dist}%{?buildtag} Summary: Three-Way / Multigroup Data Analysis Through Densities diff --git a/specs/R-CRAN-dverse.spec b/specs/R-CRAN-dverse.spec index 684d152ebf..2ce8db1d5b 100644 --- a/specs/R-CRAN-dverse.spec +++ b/specs/R-CRAN-dverse.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname dverse -%global packver 0.0.1 +%global packver 0.1.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.0.1 +Version: 0.1.0 Release: 1%{?dist}%{?buildtag} Summary: Document a Universe of Packages @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 4.3 -Requires: R-core >= 4.3 +BuildRequires: R-devel >= 3.6 +Requires: R-core >= 3.6 BuildArch: noarch BuildRequires: R-CRAN-cli BuildRequires: R-CRAN-dplyr diff --git a/specs/R-CRAN-easyclimate.spec b/specs/R-CRAN-easyclimate.spec index a2c916db67..5a0398ebda 100644 --- a/specs/R-CRAN-easyclimate.spec +++ b/specs/R-CRAN-easyclimate.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname easyclimate -%global packver 0.2.1 +%global packver 0.2.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.1 +Version: 0.2.2 Release: 1%{?dist}%{?buildtag} Summary: Easy Access to High-Resolution Daily Climate Data for Europe diff --git a/specs/R-CRAN-eseis.spec b/specs/R-CRAN-eseis.spec deleted file mode 100644 index eaaedddd5f..0000000000 --- a/specs/R-CRAN-eseis.spec +++ /dev/null @@ -1,81 +0,0 @@ -%global __brp_check_rpaths %{nil} -%global __requires_exclude ^libmpi -%global packname eseis -%global packver 0.7.3 -%global rlibdir /usr/local/lib/R/library - -Name: R-CRAN-%{packname} -Version: 0.7.3 -Release: 1%{?dist}%{?buildtag} -Summary: Environmental Seismology Toolbox - -License: GPL-3 -URL: https://cran.r-project.org/package=%{packname} -Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz - - -BuildRequires: R-devel >= 3.0.2 -Requires: R-core >= 3.0.2 -BuildRequires: R-CRAN-Rcpp >= 1.0.7 -BuildRequires: R-CRAN-terra -BuildRequires: R-CRAN-caTools -BuildRequires: R-CRAN-signal -BuildRequires: R-CRAN-fftw -BuildRequires: R-CRAN-matrixStats -BuildRequires: R-methods -BuildRequires: R-CRAN-IRISSeismic -BuildRequires: R-CRAN-XML -BuildRequires: R-CRAN-shiny -BuildRequires: R-CRAN-rmarkdown -BuildRequires: R-CRAN-colorspace -BuildRequires: R-CRAN-reticulate -BuildRequires: R-CRAN-extraDistr -BuildRequires: R-CRAN-minpack.lm -Requires: R-CRAN-Rcpp >= 1.0.7 -Requires: R-CRAN-terra -Requires: R-CRAN-caTools -Requires: R-CRAN-signal -Requires: R-CRAN-fftw -Requires: R-CRAN-matrixStats -Requires: R-methods -Requires: R-CRAN-IRISSeismic -Requires: R-CRAN-XML -Requires: R-CRAN-shiny -Requires: R-CRAN-rmarkdown -Requires: R-CRAN-colorspace -Requires: R-CRAN-reticulate -Requires: R-CRAN-extraDistr -Requires: R-CRAN-minpack.lm - -%description -Environmental seismology is a scientific field that studies the seismic -signals, emitted by Earth surface processes. This package provides all -relevant functions to read/write seismic data files, prepare, analyse and -visualise seismic data, and generate reports of the processing history. - -%prep -%setup -q -c -n %{packname} - -# fix end of executable files -find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; -# prevent binary stripping -[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ - sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true -[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ - sed -i 's@-g0@@g' {} \; || true -# don't allow local prefix in executable scripts -find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; - -%build - -%install - -mkdir -p %{buildroot}%{rlibdir} -%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} -test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) -rm -f %{buildroot}%{rlibdir}/R.css -# remove buildroot from installed files -find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; - -%files -%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-exametrika.spec b/specs/R-CRAN-exametrika.spec new file mode 100644 index 0000000000..c99e9d6ce0 --- /dev/null +++ b/specs/R-CRAN-exametrika.spec @@ -0,0 +1,66 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname exametrika +%global packver 1.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Test Theory Analysis and Biclustering + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch +BuildRequires: R-CRAN-mvtnorm +BuildRequires: R-CRAN-igraph +Requires: R-CRAN-mvtnorm +Requires: R-CRAN-igraph + +%description +Implements comprehensive test data engineering methods as described in +Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for +engineering and processing test data: Classical Test Theory (CTT) with +reliability coefficients for continuous ability assessment; Item Response +Theory (IRT) including Rasch, 2PL, and 3PL models with item/test +information functions; Latent Class Analysis (LCA) for nominal clustering; +Latent Rank Analysis (LRA) for ordinal clustering with automatic +determination of cluster numbers; Biclustering methods including infinite +relational models for simultaneous clustering of examinees and items +without predefined cluster numbers; and Bayesian Network Models (BNM) for +visualizing inter-item dependencies. Features local dependence analysis +through LRA and biclustering, parameter estimation, dimensionality +assessment, and network structure visualization for educational, +psychological, and social science research. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-fastbeta.spec b/specs/R-CRAN-fastbeta.spec index 76d0cb924b..a85fce14fa 100644 --- a/specs/R-CRAN-fastbeta.spec +++ b/specs/R-CRAN-fastbeta.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname fastbeta -%global packver 0.3.0 +%global packver 0.3.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.3.0 +Version: 0.3.1 Release: 1%{?dist}%{?buildtag} Summary: Fast Approximation of Time-Varying Infectious Disease Transmission Rates @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 4.3.0 -Requires: R-core >= 4.3.0 +BuildRequires: R-devel >= 4.3 +Requires: R-core >= 4.3 BuildRequires: R-grDevices BuildRequires: R-graphics BuildRequires: R-stats diff --git a/specs/R-CRAN-flipscores.spec b/specs/R-CRAN-flipscores.spec index 579c112be7..52d1254233 100644 --- a/specs/R-CRAN-flipscores.spec +++ b/specs/R-CRAN-flipscores.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname flipscores -%global packver 1.2.0 +%global packver 1.3.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2.0 +Version: 1.3.1 Release: 1%{?dist}%{?buildtag} Summary: Robust Score Testing in GLMs, by Sign-Flip Contributions diff --git a/specs/R-CRAN-geofi.spec b/specs/R-CRAN-geofi.spec index 6445560aa0..fff45f8c29 100644 --- a/specs/R-CRAN-geofi.spec +++ b/specs/R-CRAN-geofi.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname geofi -%global packver 1.0.16 +%global packver 1.0.17 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.16 +Version: 1.0.17 Release: 1%{?dist}%{?buildtag} Summary: Access Finnish Geospatial Data diff --git a/specs/R-CRAN-ggblanket.spec b/specs/R-CRAN-ggblanket.spec index aef221afe3..40f7960e0c 100644 --- a/specs/R-CRAN-ggblanket.spec +++ b/specs/R-CRAN-ggblanket.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ggblanket -%global packver 10.0.0 +%global packver 11.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 10.0.0 +Version: 11.0.0 Release: 1%{?dist}%{?buildtag} Summary: Simplify 'ggplot2' Visualisation @@ -17,7 +17,7 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel Requires: R-core BuildArch: noarch -BuildRequires: R-CRAN-ggplot2 >= 3.5.0 +BuildRequires: R-CRAN-ggplot2 >= 3.5.1 BuildRequires: R-CRAN-lubridate >= 1.7.8 BuildRequires: R-CRAN-scales >= 1.3.0 BuildRequires: R-CRAN-stringr >= 1.3.0 @@ -35,7 +35,7 @@ BuildRequires: R-CRAN-magrittr BuildRequires: R-CRAN-purrr BuildRequires: R-CRAN-snakecase BuildRequires: R-CRAN-viridisLite -Requires: R-CRAN-ggplot2 >= 3.5.0 +Requires: R-CRAN-ggplot2 >= 3.5.1 Requires: R-CRAN-lubridate >= 1.7.8 Requires: R-CRAN-scales >= 1.3.0 Requires: R-CRAN-stringr >= 1.3.0 diff --git a/specs/R-CRAN-hyperbolicDEA.spec b/specs/R-CRAN-hyperbolicDEA.spec index 76ae476879..39a72377e5 100644 --- a/specs/R-CRAN-hyperbolicDEA.spec +++ b/specs/R-CRAN-hyperbolicDEA.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname hyperbolicDEA -%global packver 1.0.1 +%global packver 1.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.1 +Version: 1.0.2 Release: 1%{?dist}%{?buildtag} Summary: Hyperbolic DEA Estimation diff --git a/specs/R-CRAN-incidence2.spec b/specs/R-CRAN-incidence2.spec index 6cc618ab8d..92dfab0f22 100644 --- a/specs/R-CRAN-incidence2.spec +++ b/specs/R-CRAN-incidence2.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname incidence2 -%global packver 2.5.0 +%global packver 2.6.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.5.0 +Version: 2.6.0 Release: 1%{?dist}%{?buildtag} Summary: Compute, Handle and Plot Incidence of Dated Events @@ -17,9 +17,9 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.1.0 Requires: R-core >= 4.1.0 BuildArch: noarch +BuildRequires: R-CRAN-grates >= 1.3.0 BuildRequires: R-CRAN-ympes >= 1.3.0 BuildRequires: R-CRAN-dplyr >= 1.1.0 -BuildRequires: R-CRAN-grates >= 1.0.0 BuildRequires: R-grDevices BuildRequires: R-CRAN-data.table BuildRequires: R-CRAN-pillar @@ -30,9 +30,9 @@ BuildRequires: R-CRAN-tidyr BuildRequires: R-CRAN-tidyselect BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-vctrs +Requires: R-CRAN-grates >= 1.3.0 Requires: R-CRAN-ympes >= 1.3.0 Requires: R-CRAN-dplyr >= 1.1.0 -Requires: R-CRAN-grates >= 1.0.0 Requires: R-grDevices Requires: R-CRAN-data.table Requires: R-CRAN-pillar diff --git a/specs/R-CRAN-isopleuros.spec b/specs/R-CRAN-isopleuros.spec index 60d3d663b6..3b4d8e2f2a 100644 --- a/specs/R-CRAN-isopleuros.spec +++ b/specs/R-CRAN-isopleuros.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname isopleuros -%global packver 1.2.0 +%global packver 1.3.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2.0 +Version: 1.3.0 Release: 1%{?dist}%{?buildtag} Summary: Ternary Plots diff --git a/specs/R-CRAN-jointVIP.spec b/specs/R-CRAN-jointVIP.spec index 8227ea640d..825cec1820 100644 --- a/specs/R-CRAN-jointVIP.spec +++ b/specs/R-CRAN-jointVIP.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname jointVIP -%global packver 0.1.2 +%global packver 1.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.2 +Version: 1.0.0 Release: 1%{?dist}%{?buildtag} Summary: Prioritize Variables with Joint Variable Importance Plot in Observational Study Design @@ -33,11 +33,11 @@ omitted variable bias framework. The plots translate variable importance into recommended values for tuning parameters in existing methods. Post-matching and/or weighting plots can also be used to visualize and assess the quality of the observational study design. The method -motivation and derivation is presented in "Using Joint Variable Importance -Plots to Prioritize Variables in Assessing the Impact of Glyburide on -Adverse Birth Outcomes" by Liao et al. (2023) . See the -package paper by Liao and Pimentel (2023) for a -beginner friendly user introduction. +motivation and derivation is presented in "Prioritizing Variables for +Observational Study Design using the Joint Variable Importance Plot" by +Liao et al. (2024) . See the package +paper by Liao and Pimentel (2024) for a beginner +friendly user introduction. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-liver.spec b/specs/R-CRAN-liver.spec index a6f75286fb..5a1d17fa9f 100644 --- a/specs/R-CRAN-liver.spec +++ b/specs/R-CRAN-liver.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname liver -%global packver 1.17 +%global packver 1.18 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.17 +Version: 1.18 Release: 1%{?dist}%{?buildtag} Summary: "Eating the Liver of Data Science" diff --git a/specs/R-CRAN-maestro.spec b/specs/R-CRAN-maestro.spec index c909b214d6..6abddafc41 100644 --- a/specs/R-CRAN-maestro.spec +++ b/specs/R-CRAN-maestro.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname maestro -%global packver 0.4.0 +%global packver 0.4.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.4.0 +Version: 0.4.1 Release: 1%{?dist}%{?buildtag} Summary: Orchestration of Data Pipelines diff --git a/specs/R-CRAN-maicplus.spec b/specs/R-CRAN-maicplus.spec index ce9e55af5b..61504762cf 100644 --- a/specs/R-CRAN-maicplus.spec +++ b/specs/R-CRAN-maicplus.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname maicplus -%global packver 0.1.0 +%global packver 0.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.1.1 Release: 1%{?dist}%{?buildtag} Summary: Matching Adjusted Indirect Comparison @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.6 -Requires: R-core >= 3.6 +BuildRequires: R-devel >= 4.1 +Requires: R-core >= 4.1 BuildArch: noarch BuildRequires: R-graphics BuildRequires: R-grDevices diff --git a/specs/R-CRAN-merlin.spec b/specs/R-CRAN-merlin.spec deleted file mode 100644 index c52d468bf5..0000000000 --- a/specs/R-CRAN-merlin.spec +++ /dev/null @@ -1,68 +0,0 @@ -%global __brp_check_rpaths %{nil} -%global packname merlin -%global packver 0.1.0 -%global rlibdir /usr/local/lib/R/library - -Name: R-CRAN-%{packname} -Version: 0.1.0 -Release: 2%{?dist}%{?buildtag} -Summary: Mixed Effects Regression for Linear, Non-Linear and User-DefinedModels - -License: GPL (>= 3) -URL: https://cran.r-project.org/package=%{packname} -Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz - - -BuildRequires: R-devel >= 2.10 -Requires: R-core >= 2.10 -BuildArch: noarch -BuildRequires: R-MASS -BuildRequires: R-CRAN-randtoolbox -BuildRequires: R-CRAN-statmod -BuildRequires: R-stats -BuildRequires: R-survival -BuildRequires: R-tools -Requires: R-MASS -Requires: R-CRAN-randtoolbox -Requires: R-CRAN-statmod -Requires: R-stats -Requires: R-survival -Requires: R-tools - -%description -Fits linear, non-linear, and user-defined mixed effects regression models -following the framework developed by Crowther (2017) . -'merlin' can fit multivariate outcome models of any type, each of which -could be repeatedly measured (longitudinal), with any number of levels, -and with any number of random effects at each level. Standard -distributions/models available include the Bernoulli, Gaussian, Poisson, -beta, negative-binomial, and time-to-event/survival models include the -exponential, Gompertz, Royston-Parmar, Weibull and general hazard model. -'merlin' provides a flexible predictor syntax, allowing the user to define -variables, random effects, spline and fractional polynomial functions, -functions of other outcome models, and any interaction between each of -them. Non-linear and time-dependent effects are seamlessly incorporated -into the predictor. 'merlin' allows multivariate normal random effects, -which are integrated out using Gaussian quadrature or Monte-Carlo -integration. Note, 'merlin' is based on the 'Stata' package of the same -name, described in Crowther (2018) . - -%prep -%setup -q -c -n %{packname} - -find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; -[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ - sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true - -%build - -%install - -mkdir -p %{buildroot}%{rlibdir} -%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} -test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) -rm -f %{buildroot}%{rlibdir}/R.css -find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; - -%files -%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-mlr3tuningspaces.spec b/specs/R-CRAN-mlr3tuningspaces.spec index e288196ed0..e800ad7ade 100644 --- a/specs/R-CRAN-mlr3tuningspaces.spec +++ b/specs/R-CRAN-mlr3tuningspaces.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname mlr3tuningspaces -%global packver 0.5.1 +%global packver 0.5.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.5.1 +Version: 0.5.2 Release: 1%{?dist}%{?buildtag} Summary: Search Spaces for 'mlr3' diff --git a/specs/R-CRAN-mpathr.spec b/specs/R-CRAN-mpathr.spec index adc402f727..94691c7fff 100644 --- a/specs/R-CRAN-mpathr.spec +++ b/specs/R-CRAN-mpathr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname mpathr -%global packver 1.0.1 +%global packver 1.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.1 +Version: 1.0.2 Release: 1%{?dist}%{?buildtag} Summary: Easily Handling Data from the ‘m-Path’ Platform diff --git a/specs/R-CRAN-networkDynamic.spec b/specs/R-CRAN-networkDynamic.spec index 897b3ce1c8..ef8c11cfc4 100644 --- a/specs/R-CRAN-networkDynamic.spec +++ b/specs/R-CRAN-networkDynamic.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname networkDynamic -%global packver 0.11.4 +%global packver 0.11.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.11.4 +Version: 0.11.5 Release: 1%{?dist}%{?buildtag} Summary: Dynamic Extensions for Network Objects diff --git a/specs/R-CRAN-neutrostat.spec b/specs/R-CRAN-neutrostat.spec index bb7b640bf5..3e16547fc1 100644 --- a/specs/R-CRAN-neutrostat.spec +++ b/specs/R-CRAN-neutrostat.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname neutrostat -%global packver 0.0.1 +%global packver 0.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.0.1 +Version: 0.0.2 Release: 1%{?dist}%{?buildtag} Summary: Neutrosophic Statistics @@ -17,6 +17,14 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.00 Requires: R-core >= 4.00 BuildArch: noarch +BuildRequires: R-CRAN-moments +BuildRequires: R-CRAN-ntsDists +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-stats +Requires: R-CRAN-moments +Requires: R-CRAN-ntsDists +Requires: R-CRAN-ggplot2 +Requires: R-stats %description Analyzes data involving imprecise and vague information. Provides summary diff --git a/specs/R-CRAN-omopgenerics.spec b/specs/R-CRAN-omopgenerics.spec index 3f22953073..b94704e3d5 100644 --- a/specs/R-CRAN-omopgenerics.spec +++ b/specs/R-CRAN-omopgenerics.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname omopgenerics -%global packver 0.3.1 +%global packver 0.4.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.3.1 +Version: 0.4.0 Release: 1%{?dist}%{?buildtag} Summary: Methods and Classes for the OMOP Common Data Model @@ -20,6 +20,7 @@ BuildArch: noarch BuildRequires: R-CRAN-cli BuildRequires: R-CRAN-dbplyr BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-generics BuildRequires: R-CRAN-glue BuildRequires: R-CRAN-lifecycle BuildRequires: R-methods @@ -32,6 +33,7 @@ BuildRequires: R-CRAN-vctrs Requires: R-CRAN-cli Requires: R-CRAN-dbplyr Requires: R-CRAN-dplyr +Requires: R-CRAN-generics Requires: R-CRAN-glue Requires: R-CRAN-lifecycle Requires: R-methods diff --git a/specs/R-CRAN-osmextract.spec b/specs/R-CRAN-osmextract.spec index 5c0b02fafe..17fca118ad 100644 --- a/specs/R-CRAN-osmextract.spec +++ b/specs/R-CRAN-osmextract.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname osmextract -%global packver 0.5.1 +%global packver 0.5.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.5.1 +Version: 0.5.2 Release: 1%{?dist}%{?buildtag} Summary: Download and Import Open Street Map Data Extracts @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.5.0 -Requires: R-core >= 3.5.0 +BuildRequires: R-devel >= 3.6.0 +Requires: R-core >= 3.6.0 BuildArch: noarch BuildRequires: R-CRAN-sf >= 0.8.1 BuildRequires: R-utils diff --git a/specs/R-CRAN-photobiologyInOut.spec b/specs/R-CRAN-photobiologyInOut.spec index 91012e6f0a..16cf8a0904 100644 --- a/specs/R-CRAN-photobiologyInOut.spec +++ b/specs/R-CRAN-photobiologyInOut.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname photobiologyInOut -%global packver 0.4.28-1 +%global packver 0.4.29 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.4.28.1 +Version: 0.4.29 Release: 1%{?dist}%{?buildtag} Summary: Read Spectral and Logged Data from Foreign Files diff --git a/specs/R-CRAN-progressr.spec b/specs/R-CRAN-progressr.spec index 478e3594d4..ed71b9bc0b 100644 --- a/specs/R-CRAN-progressr.spec +++ b/specs/R-CRAN-progressr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname progressr -%global packver 0.15.0 +%global packver 0.15.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.15.0 +Version: 0.15.1 Release: 1%{?dist}%{?buildtag} Summary: An Inclusive, Unifying API for Progress Updates diff --git a/specs/R-CRAN-quantreg.spec b/specs/R-CRAN-quantreg.spec index 380754fed8..d347bf79ca 100644 --- a/specs/R-CRAN-quantreg.spec +++ b/specs/R-CRAN-quantreg.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname quantreg -%global packver 5.99 +%global packver 5.99.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 5.99 +Version: 5.99.1 Release: 1%{?dist}%{?buildtag} Summary: Quantile Regression diff --git a/specs/R-CRAN-respirometry.spec b/specs/R-CRAN-respirometry.spec index 8294ce711c..a3ca0ef453 100644 --- a/specs/R-CRAN-respirometry.spec +++ b/specs/R-CRAN-respirometry.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname respirometry -%global packver 2.0.0 +%global packver 2.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.0 +Version: 2.0.1 Release: 1%{?dist}%{?buildtag} Summary: Tools for Conducting and Analyzing Respirometry Experiments diff --git a/specs/R-CRAN-IRISSeismic.spec b/specs/R-CRAN-saeHB.spatial.spec similarity index 58% rename from specs/R-CRAN-IRISSeismic.spec rename to specs/R-CRAN-saeHB.spatial.spec index bcd7e54fc8..4140976762 100644 --- a/specs/R-CRAN-IRISSeismic.spec +++ b/specs/R-CRAN-saeHB.spatial.spec @@ -1,44 +1,42 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi -%global packname IRISSeismic -%global packver 1.6.6 +%global packname saeHB.spatial +%global packver 0.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.6.6 +Version: 0.1.1 Release: 1%{?dist}%{?buildtag} -Summary: Classes and Methods for Seismic Data Analysis +Summary: Small Area Estimation Hierarchical Bayes For Spatial Model -License: GPL (>= 2) +License: GPL-3 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.1.0 -Requires: R-core >= 3.1.0 -BuildRequires: R-CRAN-seismicRoll >= 1.1.0 -BuildRequires: R-methods -BuildRequires: R-CRAN-pracma -BuildRequires: R-CRAN-RCurl -BuildRequires: R-CRAN-signal +BuildRequires: R-devel >= 2.10 +Requires: R-core >= 2.10 +BuildArch: noarch BuildRequires: R-CRAN-stringr -BuildRequires: R-CRAN-XML +BuildRequires: R-CRAN-coda +BuildRequires: R-CRAN-rjags BuildRequires: R-stats -Requires: R-CRAN-seismicRoll >= 1.1.0 -Requires: R-methods -Requires: R-CRAN-pracma -Requires: R-CRAN-RCurl -Requires: R-CRAN-signal +BuildRequires: R-grDevices +BuildRequires: R-graphics Requires: R-CRAN-stringr -Requires: R-CRAN-XML +Requires: R-CRAN-coda +Requires: R-CRAN-rjags Requires: R-stats +Requires: R-grDevices +Requires: R-graphics %description -Provides classes and methods for seismic data analysis. The base classes -and methods are inspired by the python code found in the 'ObsPy' python -toolbox . Additional classes and methods -support data returned by web services provided by the 'IRIS DMC' -. +Provides several functions and datasets for area level of Small Area +Estimation under Spatial Model using Hierarchical Bayesian (HB) Method. +Model-based estimators include the HB estimators based on a Spatial +Fay-Herriot model with univariate normal distribution for variable of +interest.The 'rjags' package is employed to obtain parameter estimates. +For the reference, see Rao and Molina (2015) . %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-sleev.spec b/specs/R-CRAN-sleev.spec index 8efefdf7f3..af00fa232c 100644 --- a/specs/R-CRAN-sleev.spec +++ b/specs/R-CRAN-sleev.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname sleev -%global packver 1.0.3 +%global packver 1.0.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.3 +Version: 1.0.5 Release: 1%{?dist}%{?buildtag} Summary: Semiparametric Likelihood Estimation with Errors in Variables diff --git a/specs/R-CRAN-slendr.spec b/specs/R-CRAN-slendr.spec index 3e95971f2b..82ae121a56 100644 --- a/specs/R-CRAN-slendr.spec +++ b/specs/R-CRAN-slendr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname slendr -%global packver 0.9.1 +%global packver 1.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.9.1 +Version: 1.0.0 Release: 1%{?dist}%{?buildtag} Summary: A Simulation Framework for Spatiotemporal Population Genetics diff --git a/specs/R-CRAN-solartime.spec b/specs/R-CRAN-solartime.spec index 0e8298e8a9..b8dd5b7072 100644 --- a/specs/R-CRAN-solartime.spec +++ b/specs/R-CRAN-solartime.spec @@ -1,10 +1,11 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname solartime -%global packver 0.0.2 +%global packver 0.0.4 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.0.2 +Version: 0.0.4 Release: 1%{?dist}%{?buildtag} Summary: Utilities Dealing with Solar Time Such as Sun Position and Time of Sunrise @@ -32,6 +33,8 @@ find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; diff --git a/specs/R-CRAN-sparta.spec b/specs/R-CRAN-sparta.spec index 1cd7e4588e..eda87ff218 100644 --- a/specs/R-CRAN-sparta.spec +++ b/specs/R-CRAN-sparta.spec @@ -1,10 +1,11 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname sparta -%global packver 0.8.4 +%global packver 1.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.8.4 +Version: 1.0.1 Release: 1%{?dist}%{?buildtag} Summary: Sparse Tables @@ -20,7 +21,8 @@ BuildRequires: R-CRAN-RcppArmadillo Requires: R-CRAN-Rcpp >= 1.0.5 %description -Fast Multiplication and Marginalization of Sparse Tables. +Fast Multiplication and Marginalization of Sparse Tables +. %prep %setup -q -c -n %{packname} diff --git a/specs/R-CRAN-super.spec b/specs/R-CRAN-super.spec new file mode 100644 index 0000000000..07d9a17fbb --- /dev/null +++ b/specs/R-CRAN-super.spec @@ -0,0 +1,50 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname super +%global packver 0.0.3 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.0.3 +Release: 1%{?dist}%{?buildtag} +Summary: Interpreted String Literals + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.6 +Requires: R-core >= 3.6 + +%description +An implementation of interpreted string literals. Based on the 'glue' +package by Hester & Bryan (2024) but with +a focus on efficiency and simplicity at a cost of flexibility. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-topics.spec b/specs/R-CRAN-topics.spec new file mode 100644 index 0000000000..7dd169e959 --- /dev/null +++ b/specs/R-CRAN-topics.spec @@ -0,0 +1,88 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname topics +%global packver 0.20.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.20.0 +Release: 1%{?dist}%{?buildtag} +Summary: Creating and Significance Testing Language Features for Visualisation + +License: GPL-3 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.00 +Requires: R-core >= 4.00 +BuildArch: noarch +BuildRequires: R-CRAN-text +BuildRequires: R-CRAN-textmineR +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-mallet +BuildRequires: R-CRAN-rJava +BuildRequires: R-CRAN-ggwordcloud +BuildRequires: R-CRAN-effsize +BuildRequires: R-CRAN-purrr +BuildRequires: R-CRAN-tibble +BuildRequires: R-methods +BuildRequires: R-CRAN-readr +BuildRequires: R-CRAN-stopwords +BuildRequires: R-CRAN-Matrix +BuildRequires: R-CRAN-ngram +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-tidyr +Requires: R-CRAN-text +Requires: R-CRAN-textmineR +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-dplyr +Requires: R-CRAN-mallet +Requires: R-CRAN-rJava +Requires: R-CRAN-ggwordcloud +Requires: R-CRAN-effsize +Requires: R-CRAN-purrr +Requires: R-CRAN-tibble +Requires: R-methods +Requires: R-CRAN-readr +Requires: R-CRAN-stopwords +Requires: R-CRAN-Matrix +Requires: R-CRAN-ngram +Requires: R-CRAN-stringr +Requires: R-CRAN-rlang +Requires: R-CRAN-tidyr + +%description +Implements differential language analysis with statistical tests and +offers various language visualization techniques for n-grams and topics. +It also supports the 'text' package. For more information, visit + and . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-toxEval.spec b/specs/R-CRAN-toxEval.spec index 037616600d..220ed790f4 100644 --- a/specs/R-CRAN-toxEval.spec +++ b/specs/R-CRAN-toxEval.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname toxEval -%global packver 1.3.2 +%global packver 1.4.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3.2 +Version: 1.4.0 Release: 1%{?dist}%{?buildtag} Summary: Exploring Biological Relevance of Environmental Chemistry Observations @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 3.5.0 -Requires: R-core >= 3.5.0 +BuildRequires: R-devel >= 4.1.0 +Requires: R-core >= 4.1.0 BuildArch: noarch BuildRequires: R-CRAN-ggplot2 >= 3.0.0 BuildRequires: R-CRAN-leaflet >= 1.0.0 diff --git a/specs/R-CRAN-vDiveR.spec b/specs/R-CRAN-vDiveR.spec index 6d979cb4fc..01a131ec9b 100644 --- a/specs/R-CRAN-vDiveR.spec +++ b/specs/R-CRAN-vDiveR.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname vDiveR -%global packver 2.0.0 +%global packver 2.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.0 +Version: 2.0.1 Release: 1%{?dist}%{?buildtag} Summary: Visualization of Viral Protein Sequence Diversity Dynamics @@ -22,10 +22,8 @@ BuildRequires: R-CRAN-gghalves BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-ggpubr BuildRequires: R-grid -BuildRequires: R-CRAN-gridExtra BuildRequires: R-CRAN-ggtext BuildRequires: R-CRAN-magrittr -BuildRequires: R-CRAN-plyr BuildRequires: R-CRAN-tidyr BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-rlang @@ -33,15 +31,15 @@ BuildRequires: R-CRAN-rentrez BuildRequires: R-CRAN-scales BuildRequires: R-utils BuildRequires: R-CRAN-maps +BuildRequires: R-CRAN-cowplot +BuildRequires: R-CRAN-stringdist Requires: R-CRAN-dplyr Requires: R-CRAN-gghalves Requires: R-CRAN-ggplot2 Requires: R-CRAN-ggpubr Requires: R-grid -Requires: R-CRAN-gridExtra Requires: R-CRAN-ggtext Requires: R-CRAN-magrittr -Requires: R-CRAN-plyr Requires: R-CRAN-tidyr Requires: R-CRAN-stringr Requires: R-CRAN-rlang @@ -49,6 +47,8 @@ Requires: R-CRAN-rentrez Requires: R-CRAN-scales Requires: R-utils Requires: R-CRAN-maps +Requires: R-CRAN-cowplot +Requires: R-CRAN-stringdist %description To ease the visualization of outputs from Diversity Motif Analyser