diff --git a/specs/R-CRAN-AdverseEvents.spec b/specs/R-CRAN-AdverseEvents.spec index 6a3c65b47..95a103d31 100644 --- a/specs/R-CRAN-AdverseEvents.spec +++ b/specs/R-CRAN-AdverseEvents.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname AdverseEvents -%global packver 0.0.1 +%global packver 0.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.0.1 +Version: 0.0.2 Release: 1%{?dist}%{?buildtag} Summary: 'shiny' Application for Adverse Event Analysis of 'OnCore' Data diff --git a/specs/R-CRAN-EL.spec b/specs/R-CRAN-EL.spec index cddd73d03..fe92dba8c 100644 --- a/specs/R-CRAN-EL.spec +++ b/specs/R-CRAN-EL.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname EL -%global packver 1.2 +%global packver 1.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2 +Version: 1.3 Release: 1%{?dist}%{?buildtag} Summary: Two-Sample Empirical Likelihood @@ -16,6 +16,12 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel Requires: R-core +BuildRequires: R-stats +BuildRequires: R-CRAN-nleqslv +BuildRequires: R-CRAN-ggplot2 +Requires: R-stats +Requires: R-CRAN-nleqslv +Requires: R-CRAN-ggplot2 %description Empirical likelihood (EL) inference for two-sample problems. The following diff --git a/specs/R-CRAN-Hmisc.spec b/specs/R-CRAN-Hmisc.spec index 38ab43807..d59632dc9 100644 --- a/specs/R-CRAN-Hmisc.spec +++ b/specs/R-CRAN-Hmisc.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname Hmisc -%global packver 5.1-3 +%global packver 5.2-0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 5.1.3 +Version: 5.2.0 Release: 1%{?dist}%{?buildtag} Summary: Harrell Miscellaneous @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 4.1.0 -Requires: R-core >= 4.1.0 +BuildRequires: R-devel >= 4.2.0 +Requires: R-core >= 4.2.0 BuildRequires: R-CRAN-htmlTable >= 1.11.0 BuildRequires: R-methods BuildRequires: R-CRAN-ggplot2 diff --git a/specs/R-CRAN-MRG.spec b/specs/R-CRAN-MRG.spec index 42a23f2fc..e3368e5e8 100644 --- a/specs/R-CRAN-MRG.spec +++ b/specs/R-CRAN-MRG.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname MRG -%global packver 0.2.14 +%global packver 0.3.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.2.14 +Version: 0.3.1 Release: 1%{?dist}%{?buildtag} Summary: Create Non-Confidential Multi-Resolution Grids diff --git a/specs/R-CRAN-MomTrunc.spec b/specs/R-CRAN-MomTrunc.spec index ce6507580..50773de30 100644 --- a/specs/R-CRAN-MomTrunc.spec +++ b/specs/R-CRAN-MomTrunc.spec @@ -1,10 +1,11 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname MomTrunc -%global packver 6.0 +%global packver 6.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 6.0 +Version: 6.1 Release: 1%{?dist}%{?buildtag} Summary: Moments of Folded and Doubly Truncated Multivariate Distributions diff --git a/specs/R-CRAN-ProTrackR2.spec b/specs/R-CRAN-ProTrackR2.spec new file mode 100644 index 000000000..246061121 --- /dev/null +++ b/specs/R-CRAN-ProTrackR2.spec @@ -0,0 +1,57 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname ProTrackR2 +%global packver 0.0.4 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.0.4 +Release: 1%{?dist}%{?buildtag} +Summary: Manipulate and Play 'ProTracker' Modules + +License: GPL (>= 3) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildRequires: R-CRAN-audio +BuildRequires: R-CRAN-cpp11 +Requires: R-CRAN-audio + +%description +'ProTracker' is a popular music tracker to sequence music on a Commodore +Amiga machine. This package offers the opportunity to import, export, +manipulate and play 'ProTracker' module files. Even though the file format +could be considered archaic, it still remains popular to this date. This +package intends to contribute to this popularity and therewith keeping the +legacy of 'ProTracker' and the Commodore Amiga alive. This package is the +successor of 'ProTrackR' providing better performance. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-Rdiagnosislist.spec b/specs/R-CRAN-Rdiagnosislist.spec index ea7ab4d8d..3a1fd78b7 100644 --- a/specs/R-CRAN-Rdiagnosislist.spec +++ b/specs/R-CRAN-Rdiagnosislist.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname Rdiagnosislist -%global packver 1.2 +%global packver 1.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2 +Version: 1.3 Release: 1%{?dist}%{?buildtag} Summary: Manipulate SNOMED CT Diagnosis Lists @@ -17,9 +17,11 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildArch: noarch +BuildRequires: R-CRAN-readxl BuildRequires: R-CRAN-data.table BuildRequires: R-CRAN-bit64 BuildRequires: R-methods +Requires: R-CRAN-readxl Requires: R-CRAN-data.table Requires: R-CRAN-bit64 Requires: R-methods diff --git a/specs/R-CRAN-SNPassoc.spec b/specs/R-CRAN-SNPassoc.spec index 51b56e8b4..224d2c826 100644 --- a/specs/R-CRAN-SNPassoc.spec +++ b/specs/R-CRAN-SNPassoc.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname SNPassoc -%global packver 2.1-0 +%global packver 2.1-2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.1.0 +Version: 2.1.2 Release: 1%{?dist}%{?buildtag} Summary: SNPs-Based Whole Genome Association Studies diff --git a/specs/R-CRAN-SVDNF.spec b/specs/R-CRAN-SVDNF.spec index 2331a08c0..0b856f22d 100644 --- a/specs/R-CRAN-SVDNF.spec +++ b/specs/R-CRAN-SVDNF.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname SVDNF -%global packver 0.1.10 +%global packver 0.1.11 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.10 +Version: 0.1.11 Release: 1%{?dist}%{?buildtag} Summary: Discrete Nonlinear Filtering for Stochastic Volatility Models diff --git a/specs/R-CRAN-ShinyWizard.spec b/specs/R-CRAN-ShinyWizard.spec new file mode 100644 index 000000000..2d7e3ca72 --- /dev/null +++ b/specs/R-CRAN-ShinyWizard.spec @@ -0,0 +1,56 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname ShinyWizard +%global packver 1.1.3.11 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.1.3.11 +Release: 1%{?dist}%{?buildtag} +Summary: An Interactive Wizard to Design, Build, and Deploy R Packages Demo Presentation + +License: GPL (>= 3) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildArch: noarch +BuildRequires: R-base +BuildRequires: R-CRAN-rstudioapi +Requires: R-base +Requires: R-CRAN-rstudioapi + +%description +Design, build, and deploy R packages demo presentations by an interactive +wizard. Set up unique title, logo and themes. Add personalized tabs +exposing applicability. And deploy as a part of a package or an +independent app. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-XDNUTS.spec b/specs/R-CRAN-XDNUTS.spec index 1f9858fdf..522b96117 100644 --- a/specs/R-CRAN-XDNUTS.spec +++ b/specs/R-CRAN-XDNUTS.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname XDNUTS -%global packver 1.2 +%global packver 1.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.2 +Version: 1.5 Release: 1%{?dist}%{?buildtag} Summary: Discontinuous Hamiltonian Monte Carlo with Varying Trajectory Length @@ -19,8 +19,10 @@ Requires: R-core >= 2.10 BuildRequires: R-CRAN-Rcpp >= 1.0.12 BuildRequires: R-base BuildRequires: R-CRAN-coda +BuildRequires: R-CRAN-ggplot2 BuildRequires: R-graphics BuildRequires: R-grDevices +BuildRequires: R-CRAN-gridExtra BuildRequires: R-parallel BuildRequires: R-CRAN-purrr BuildRequires: R-CRAN-Rdpack @@ -29,8 +31,10 @@ BuildRequires: R-CRAN-RcppArmadillo Requires: R-CRAN-Rcpp >= 1.0.12 Requires: R-base Requires: R-CRAN-coda +Requires: R-CRAN-ggplot2 Requires: R-graphics Requires: R-grDevices +Requires: R-CRAN-gridExtra Requires: R-parallel Requires: R-CRAN-purrr Requires: R-CRAN-Rdpack diff --git a/specs/R-CRAN-bfpwr.spec b/specs/R-CRAN-bfpwr.spec new file mode 100644 index 000000000..37c564d58 --- /dev/null +++ b/specs/R-CRAN-bfpwr.spec @@ -0,0 +1,54 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname bfpwr +%global packver 0.1.3 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.3 +Release: 1%{?dist}%{?buildtag} +Summary: Power and Sample Size Calculations for Bayes Factor Analysis + +License: GPL-3 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildArch: noarch +BuildRequires: R-CRAN-lamW +Requires: R-CRAN-lamW + +%description +Implements z-test, t-test, and normal moment prior Bayes factors based on +summary statistics, along with functionality to perform corresponding +power and sample size calculations as described in Pawel and Held (2024) +. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-circumplex.spec b/specs/R-CRAN-circumplex.spec index 9d9a7cdd7..480c04748 100644 --- a/specs/R-CRAN-circumplex.spec +++ b/specs/R-CRAN-circumplex.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname circumplex -%global packver 0.3.10 +%global packver 1.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.3.10 +Version: 1.0.0 Release: 1%{?dist}%{?buildtag} Summary: Analysis and Visualization of Circular Data @@ -17,33 +17,19 @@ Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.4 Requires: R-core >= 3.4 BuildRequires: R-CRAN-ggplot2 >= 3.3.0 -BuildRequires: R-CRAN-tibble >= 3.0.0 -BuildRequires: R-CRAN-magrittr >= 1.5 BuildRequires: R-CRAN-boot >= 1.3.18 BuildRequires: R-CRAN-htmlTable >= 1.13.3 -BuildRequires: R-CRAN-tidyr >= 1.0.0 -BuildRequires: R-CRAN-dplyr >= 0.8.5 -BuildRequires: R-CRAN-rlang >= 0.4.11 -BuildRequires: R-CRAN-purrr >= 0.3.4 BuildRequires: R-CRAN-ggforce >= 0.3.0 -BuildRequires: R-CRAN-assertthat >= 0.2.1 BuildRequires: R-CRAN-RcppArmadillo >= 0.11 BuildRequires: R-CRAN-Rcpp -BuildRequires: R-CRAN-scales +BuildRequires: R-CRAN-rlang BuildRequires: R-stats Requires: R-CRAN-ggplot2 >= 3.3.0 -Requires: R-CRAN-tibble >= 3.0.0 -Requires: R-CRAN-magrittr >= 1.5 Requires: R-CRAN-boot >= 1.3.18 Requires: R-CRAN-htmlTable >= 1.13.3 -Requires: R-CRAN-tidyr >= 1.0.0 -Requires: R-CRAN-dplyr >= 0.8.5 -Requires: R-CRAN-rlang >= 0.4.11 -Requires: R-CRAN-purrr >= 0.3.4 Requires: R-CRAN-ggforce >= 0.3.0 -Requires: R-CRAN-assertthat >= 0.2.1 Requires: R-CRAN-Rcpp -Requires: R-CRAN-scales +Requires: R-CRAN-rlang Requires: R-stats %description diff --git a/specs/R-CRAN-classicaltest.spec b/specs/R-CRAN-classicaltest.spec new file mode 100644 index 000000000..8e59334fa --- /dev/null +++ b/specs/R-CRAN-classicaltest.spec @@ -0,0 +1,50 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname classicaltest +%global packver 0.7.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.7.0 +Release: 1%{?dist}%{?buildtag} +Summary: Classical Test Theory (CTT) Analysis + +License: GPL (>= 2.0) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 3.5.0 +Requires: R-core >= 3.5.0 +BuildArch: noarch + +%description +Functions for classical test theory analysis, following methods presented +by Wu et al. (2006) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-combat.enigma.spec b/specs/R-CRAN-combat.enigma.spec index 864e238a4..e944c027a 100644 --- a/specs/R-CRAN-combat.enigma.spec +++ b/specs/R-CRAN-combat.enigma.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname combat.enigma -%global packver 1.1 +%global packver 1.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.1 +Version: 1.1.1 Release: 1%{?dist}%{?buildtag} Summary: Fit and Apply ComBat, LMM, or Prescaling Harmonization for ENIGMA and Other Multisite MRI Data @@ -37,7 +37,7 @@ for the harmonization of MRI data (Fortin et al. (2017) separate functions for fitting and applying the harmonization and allow missing values and constant rows for its use within the Enhancing Neuro Imaging Genetics through Meta-Analysis (ENIGMA) Consortium (Radua et al. -(2020) ); this package includes the +(2020) ); this package includes the latter version. LMM calls "lme" massively considering specific brain imaging details. Finally, prescaling is a good option for fMRI, where different devices can have varying units of measurement. diff --git a/specs/R-CRAN-crrstep.spec b/specs/R-CRAN-crrstep.spec index 7805aaf40..951eea151 100644 --- a/specs/R-CRAN-crrstep.spec +++ b/specs/R-CRAN-crrstep.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname crrstep -%global packver 2023.1.1 +%global packver 2024.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2023.1.1 +Version: 2024.1.1 Release: 1%{?dist}%{?buildtag} Summary: Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model diff --git a/specs/R-CRAN-diceplot.spec b/specs/R-CRAN-diceplot.spec index 35ee43d21..2bfa961d4 100644 --- a/specs/R-CRAN-diceplot.spec +++ b/specs/R-CRAN-diceplot.spec @@ -1,15 +1,15 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname diceplot -%global packver 0.1.1 +%global packver 0.1.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.1 +Version: 0.1.2 Release: 1%{?dist}%{?buildtag} Summary: High Dimensional Categorical Data Visualization -License: GPL (>= 2) +License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz @@ -25,6 +25,7 @@ BuildRequires: R-CRAN-cowplot BuildRequires: R-CRAN-tibble BuildRequires: R-stats BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-RColorBrewer Requires: R-CRAN-ggplot2 >= 3.5.0 Requires: R-CRAN-tidyr >= 1.3.0 Requires: R-CRAN-data.table >= 1.14.8 @@ -33,6 +34,7 @@ Requires: R-CRAN-cowplot Requires: R-CRAN-tibble Requires: R-stats Requires: R-CRAN-rlang +Requires: R-CRAN-RColorBrewer %description Easy visualization for datasets with more than two categorical variables diff --git a/specs/R-CRAN-emoji.spec b/specs/R-CRAN-emoji.spec index 19ea82c5e..3abab6042 100644 --- a/specs/R-CRAN-emoji.spec +++ b/specs/R-CRAN-emoji.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname emoji -%global packver 15.0 +%global packver 16.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 15.0 +Version: 16.0.0 Release: 1%{?dist}%{?buildtag} Summary: Data and Function to Work with Emojis @@ -14,15 +14,15 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 2.10 -Requires: R-core >= 2.10 +BuildRequires: R-devel >= 3.5 +Requires: R-core >= 3.5 BuildArch: noarch -BuildRequires: R-CRAN-tibble -BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-glue -Requires: R-CRAN-tibble -Requires: R-CRAN-stringr +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-tibble Requires: R-CRAN-glue +Requires: R-CRAN-stringr +Requires: R-CRAN-tibble %description Contains data about emojis with relevant metadata, and functions to work diff --git a/specs/R-CRAN-enderecobr.spec b/specs/R-CRAN-enderecobr.spec new file mode 100644 index 000000000..56d93f3f8 --- /dev/null +++ b/specs/R-CRAN-enderecobr.spec @@ -0,0 +1,68 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname enderecobr +%global packver 0.2.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.2.0 +Release: 1%{?dist}%{?buildtag} +Summary: Padronizador de Endereços Brasileiros (Brazilian Addresses Standardizer) + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 2.10 +Requires: R-core >= 2.10 +BuildArch: noarch +BuildRequires: R-CRAN-checkmate +BuildRequires: R-CRAN-cli +BuildRequires: R-CRAN-data.table +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-stringi +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-tibble +Requires: R-CRAN-checkmate +Requires: R-CRAN-cli +Requires: R-CRAN-data.table +Requires: R-CRAN-rlang +Requires: R-CRAN-stringi +Requires: R-CRAN-stringr +Requires: R-CRAN-tibble + +%description +Padroniza endereços brasileiros a partir de diferentes critérios. Os +métodos de padronização incluem apenas manipulações básicas de strings, +não oferecendo suporte a correspondências probabilísticas entre strings. +(Standardizes brazilian addresses using different criteria. +Standardization methods include only basic string manipulation, not +supporting probabilistic matches between strings.) + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-eyetools.spec b/specs/R-CRAN-eyetools.spec new file mode 100644 index 000000000..af3a516fe --- /dev/null +++ b/specs/R-CRAN-eyetools.spec @@ -0,0 +1,82 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname eyetools +%global packver 0.7.2 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.7.2 +Release: 1%{?dist}%{?buildtag} +Summary: Analyse Eye Data + +License: GPL-3 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 2.10 +Requires: R-core >= 2.10 +BuildArch: noarch +BuildRequires: R-CRAN-ggforce +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-glue +BuildRequires: R-CRAN-hdf5r +BuildRequires: R-CRAN-lifecycle +BuildRequires: R-CRAN-magick +BuildRequires: R-CRAN-pbapply +BuildRequires: R-CRAN-rdist +BuildRequires: R-CRAN-rlang +BuildRequires: R-stats +BuildRequires: R-utils +BuildRequires: R-CRAN-zoo +Requires: R-CRAN-ggforce +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-glue +Requires: R-CRAN-hdf5r +Requires: R-CRAN-lifecycle +Requires: R-CRAN-magick +Requires: R-CRAN-pbapply +Requires: R-CRAN-rdist +Requires: R-CRAN-rlang +Requires: R-stats +Requires: R-utils +Requires: R-CRAN-zoo + +%description +Enables the automation of actions across the pipeline, including initial +steps of transforming binocular data and gap repair to event-based +processing such as fixations, saccades, and entry/duration in Areas of +Interest (AOIs). It also offers visualisation of eye movement and AOI +entries. These tools take relatively raw (trial, time, x, and y form) data +and can be used to return fixations, saccades, and AOI entries and time +spent in AOIs. As the tools rely on this basic data format, the functions +can work with data from any eye tracking device. Implements fixation and +saccade detection using methods proposed by Salvucci and Goldberg (2000) +. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-fastcmprsk.spec b/specs/R-CRAN-fastcmprsk.spec index 43d3a9d25..03b37734a 100644 --- a/specs/R-CRAN-fastcmprsk.spec +++ b/specs/R-CRAN-fastcmprsk.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname fastcmprsk -%global packver 1.24.5 +%global packver 1.24.10 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.24.5 +Version: 1.24.10 Release: 1%{?dist}%{?buildtag} Summary: Fine-Gray Regression via Forward-Backward Scan @@ -14,8 +14,8 @@ URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz -BuildRequires: R-devel >= 4.0.0 -Requires: R-core >= 4.0.0 +BuildRequires: R-devel >= 4.1.0 +Requires: R-core >= 4.1.0 BuildRequires: R-CRAN-dynpred BuildRequires: R-CRAN-foreach BuildRequires: R-CRAN-survival diff --git a/specs/R-CRAN-fastdid.spec b/specs/R-CRAN-fastdid.spec new file mode 100644 index 000000000..155e89454 --- /dev/null +++ b/specs/R-CRAN-fastdid.spec @@ -0,0 +1,67 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname fastdid +%global packver 1.0.2 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.2 +Release: 1%{?dist}%{?buildtag} +Summary: Fast Staggered Difference-in-Difference Estimators + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildArch: noarch +BuildRequires: R-CRAN-dreamerr >= 1.4.0 +BuildRequires: R-CRAN-data.table >= 1.15.0 +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-BMisc +BuildRequires: R-CRAN-collapse +BuildRequires: R-CRAN-parglm +BuildRequires: R-CRAN-ggplot2 +Requires: R-CRAN-dreamerr >= 1.4.0 +Requires: R-CRAN-data.table >= 1.15.0 +Requires: R-CRAN-stringr +Requires: R-CRAN-BMisc +Requires: R-CRAN-collapse +Requires: R-CRAN-parglm +Requires: R-CRAN-ggplot2 + +%description +A fast and flexible implementation of Callaway and Sant'Anna's +(2021) staggered +Difference-in-Differences (DiD) estimators, 'fastdid' reduces the +computation time from hours to seconds, and incorporates extensions such +as time-varying covariates and multiple events. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-gge.spec b/specs/R-CRAN-gge.spec index 64c1d02a9..c3f53bd2d 100644 --- a/specs/R-CRAN-gge.spec +++ b/specs/R-CRAN-gge.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname gge -%global packver 1.8 +%global packver 1.9 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.8 +Version: 1.9 Release: 1%{?dist}%{?buildtag} Summary: Genotype Plus Genotype-by-Environment Biplots @@ -24,7 +24,7 @@ Requires: R-CRAN-reshape2 %description Create biplots for GGE (genotype plus genotype-by-environment) and GGB -(genotype plus genotype-by-block-of-environments) models. See Laffont et +(genotype plus genotype-by-block-of-environments) models. See Laffont et al. (2013) . %prep diff --git a/specs/R-CRAN-ggpca.spec b/specs/R-CRAN-ggpca.spec new file mode 100644 index 000000000..77a26f1ec --- /dev/null +++ b/specs/R-CRAN-ggpca.spec @@ -0,0 +1,72 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname ggpca +%global packver 0.1.2 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.2 +Release: 1%{?dist}%{?buildtag} +Summary: Publication-Ready PCA, t-SNE, and UMAP Plots + +License: GPL-3 +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildArch: noarch +BuildRequires: R-CRAN-shiny >= 1.8.1.1 +BuildRequires: R-CRAN-golem >= 0.4.1 +BuildRequires: R-CRAN-config >= 0.3.2 +BuildRequires: R-CRAN-rlang +BuildRequires: R-CRAN-Rtsne +BuildRequires: R-CRAN-cowplot +BuildRequires: R-CRAN-dplyr +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-umap +Requires: R-CRAN-shiny >= 1.8.1.1 +Requires: R-CRAN-golem >= 0.4.1 +Requires: R-CRAN-config >= 0.3.2 +Requires: R-CRAN-rlang +Requires: R-CRAN-Rtsne +Requires: R-CRAN-cowplot +Requires: R-CRAN-dplyr +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-umap + +%description +Provides tools for creating publication-ready dimensionality reduction +plots, including Principal Component Analysis (PCA), t-Distributed +Stochastic Neighbor Embedding (t-SNE), and Uniform Manifold Approximation +and Projection (UMAP). This package helps visualize high-dimensional data +with options for custom labels, density plots, and faceting, using the +'ggplot2' framework Wickham (2016) . + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-icmstate.spec b/specs/R-CRAN-icmstate.spec new file mode 100644 index 000000000..688548f3a --- /dev/null +++ b/specs/R-CRAN-icmstate.spec @@ -0,0 +1,67 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname icmstate +%global packver 0.1.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.0 +Release: 1%{?dist}%{?buildtag} +Summary: Interval Censored Multi-State Models + +License: GPL (>= 2) +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildRequires: R-CRAN-igraph >= 1.3.0 +BuildRequires: R-CRAN-Rcpp +BuildRequires: R-CRAN-mstate +BuildRequires: R-CRAN-prodlim +BuildRequires: R-CRAN-checkmate +BuildRequires: R-CRAN-ggplot2 +BuildRequires: R-CRAN-deSolve +BuildRequires: R-CRAN-msm +Requires: R-CRAN-igraph >= 1.3.0 +Requires: R-CRAN-Rcpp +Requires: R-CRAN-mstate +Requires: R-CRAN-prodlim +Requires: R-CRAN-checkmate +Requires: R-CRAN-ggplot2 +Requires: R-CRAN-deSolve +Requires: R-CRAN-msm + +%description +Allows for the non-parametric estimation of transition intensities in +interval-censored multi-state models using the approach of Gomon and +Putter (2024) or Gu et al. (2023) +. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-link2GI.spec b/specs/R-CRAN-link2GI.spec index 58f468da7..748b76c2e 100644 --- a/specs/R-CRAN-link2GI.spec +++ b/specs/R-CRAN-link2GI.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname link2GI -%global packver 0.6-1 +%global packver 0.6-2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.6.1 +Version: 0.6.2 Release: 1%{?dist}%{?buildtag} Summary: Linking Geographic Information Systems, Remote Sensing and Other Command Line Tools @@ -29,7 +29,6 @@ BuildRequires: R-utils BuildRequires: R-CRAN-xml2 BuildRequires: R-CRAN-xfun BuildRequires: R-CRAN-rstudioapi -BuildRequires: R-CRAN-git2r BuildRequires: R-CRAN-renv Requires: R-CRAN-sf >= 0.9 Requires: R-CRAN-devtools @@ -43,7 +42,6 @@ Requires: R-utils Requires: R-CRAN-xml2 Requires: R-CRAN-xfun Requires: R-CRAN-rstudioapi -Requires: R-CRAN-git2r Requires: R-CRAN-renv %description diff --git a/specs/R-CRAN-liver.spec b/specs/R-CRAN-liver.spec index f36570952..a6f75286f 100644 --- a/specs/R-CRAN-liver.spec +++ b/specs/R-CRAN-liver.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname liver -%global packver 1.16 +%global packver 1.17 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.16 +Version: 1.17 Release: 1%{?dist}%{?buildtag} Summary: "Eating the Liver of Data Science" diff --git a/specs/R-CRAN-monad.spec b/specs/R-CRAN-monad.spec new file mode 100644 index 000000000..6e6b50fd0 --- /dev/null +++ b/specs/R-CRAN-monad.spec @@ -0,0 +1,55 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname monad +%global packver 0.1.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.1 +Release: 1%{?dist}%{?buildtag} +Summary: Operators and Generics for Monads + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.1 +Requires: R-core >= 4.1 +BuildArch: noarch +BuildRequires: R-CRAN-S7 +Requires: R-CRAN-S7 + +%description +Compose generic monadic function pipelines with %%>>%% and %%>-%% based on +implementing the 'S7' generics fmap() and bind(). Methods are provided for +the built-in list type and the maybe class from the 'maybe' package. The +concepts are modelled directly after the Monad typeclass in Haskell, but +adapted for idiomatic use in R. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-nixtlar.spec b/specs/R-CRAN-nixtlar.spec index 8ef31ed22..321bbc8fc 100644 --- a/specs/R-CRAN-nixtlar.spec +++ b/specs/R-CRAN-nixtlar.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname nixtlar -%global packver 0.6.1 +%global packver 0.6.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.6.1 +Version: 0.6.2 Release: 1%{?dist}%{?buildtag} Summary: A Software Development Kit for 'Nixtla''s 'TimeGPT' diff --git a/specs/R-CRAN-nlmixr2.spec b/specs/R-CRAN-nlmixr2.spec index 6170f0847..6c2383a52 100644 --- a/specs/R-CRAN-nlmixr2.spec +++ b/specs/R-CRAN-nlmixr2.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname nlmixr2 -%global packver 3.0.0 +%global packver 3.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.0.0 +Version: 3.0.1 Release: 1%{?dist}%{?buildtag} Summary: Nonlinear Mixed Effects Models in Population PK/PD diff --git a/specs/R-CRAN-numberize.spec b/specs/R-CRAN-numberize.spec index 61509fbbe..12addc999 100644 --- a/specs/R-CRAN-numberize.spec +++ b/specs/R-CRAN-numberize.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname numberize -%global packver 1.0.0 +%global packver 1.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0 +Version: 1.0.1 Release: 1%{?dist}%{?buildtag} Summary: Convert Words to Numbers in Multiple Languages diff --git a/specs/R-CRAN-occCite.spec b/specs/R-CRAN-occCite.spec index be0d56d17..702523997 100644 --- a/specs/R-CRAN-occCite.spec +++ b/specs/R-CRAN-occCite.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname occCite -%global packver 0.5.8 +%global packver 0.5.9 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.5.8 +Version: 0.5.9 Release: 1%{?dist}%{?buildtag} Summary: Querying and Managing Large Biodiversity Occurrence Datasets @@ -18,12 +18,14 @@ BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildArch: noarch BuildRequires: R-CRAN-rgbif >= 3.1 +BuildRequires: R-CRAN-ape BuildRequires: R-CRAN-bib2df BuildRequires: R-CRAN-BIEN BuildRequires: R-CRAN-curl BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-lubridate BuildRequires: R-methods +BuildRequires: R-CRAN-RefManageR BuildRequires: R-CRAN-stringr BuildRequires: R-stats BuildRequires: R-CRAN-leaflet @@ -37,12 +39,14 @@ BuildRequires: R-CRAN-viridis BuildRequires: R-CRAN-DBI BuildRequires: R-CRAN-waffle Requires: R-CRAN-rgbif >= 3.1 +Requires: R-CRAN-ape Requires: R-CRAN-bib2df Requires: R-CRAN-BIEN Requires: R-CRAN-curl Requires: R-CRAN-dplyr Requires: R-CRAN-lubridate Requires: R-methods +Requires: R-CRAN-RefManageR Requires: R-CRAN-stringr Requires: R-stats Requires: R-CRAN-leaflet diff --git a/specs/R-CRAN-pdp.spec b/specs/R-CRAN-pdp.spec index 511d0c9e3..6725e8b22 100644 --- a/specs/R-CRAN-pdp.spec +++ b/specs/R-CRAN-pdp.spec @@ -1,10 +1,11 @@ %global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi %global packname pdp -%global packver 0.8.1 +%global packver 0.8.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.8.1 +Version: 0.8.2 Release: 1%{?dist}%{?buildtag} Summary: Partial Dependence Plots diff --git a/specs/R-CRAN-picohdr.spec b/specs/R-CRAN-picohdr.spec new file mode 100644 index 000000000..18f4f317a --- /dev/null +++ b/specs/R-CRAN-picohdr.spec @@ -0,0 +1,59 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname picohdr +%global packver 0.1.1 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.1.1 +Release: 1%{?dist}%{?buildtag} +Summary: Read, Write and Manipulate High Dynamic Range Images + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildRequires: R-CRAN-ctypesio +Requires: R-CRAN-ctypesio + +%description +High Dynamic Range (HDR) images support a large range in luminosity +between the lightest and darkest regions of an image. To capture this +range, data in HDR images is often stored as floating point numbers and in +formats that capture more data and channels than standard image types. +This package supports reading and writing two types of HDR images; PFM +(Portable Float Map) and OpenEXR images. HDR images can be converted to +lower dynamic ranges (for viewing) using tone-mapping. A number of +tone-mapping algorithms are included which are based on Reinhard (2002) +"Photographic tone reproduction for digital images" +. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-pingr.spec b/specs/R-CRAN-pingr.spec index 9ad6dba66..0afd8179a 100644 --- a/specs/R-CRAN-pingr.spec +++ b/specs/R-CRAN-pingr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname pingr -%global packver 2.0.3 +%global packver 2.0.4 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 2.0.3 +Version: 2.0.4 Release: 1%{?dist}%{?buildtag} Summary: Check if a Remote Computer is Up diff --git a/specs/R-CRAN-pkgbuild.spec b/specs/R-CRAN-pkgbuild.spec index 4a41c290a..59d9d259f 100644 --- a/specs/R-CRAN-pkgbuild.spec +++ b/specs/R-CRAN-pkgbuild.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname pkgbuild -%global packver 1.4.4 +%global packver 1.4.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.4.4 +Version: 1.4.5 Release: 1%{?dist}%{?buildtag} Summary: Find Tools Needed to Build R Packages diff --git a/specs/R-CRAN-primarycensored.spec b/specs/R-CRAN-primarycensored.spec new file mode 100644 index 000000000..c0d449802 --- /dev/null +++ b/specs/R-CRAN-primarycensored.spec @@ -0,0 +1,61 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname primarycensored +%global packver 1.0.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 1.0.0 +Release: 1%{?dist}%{?buildtag} +Summary: Primary Event Censored Distributions + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel >= 4.0.0 +Requires: R-core >= 4.0.0 +BuildArch: noarch +BuildRequires: R-CRAN-pracma +Requires: R-CRAN-pracma + +%description +Provides functions for working with primary event censored distributions +and 'Stan' implementations for use in Bayesian modeling. Primary event +censored distributions are useful for modeling delayed reporting scenarios +in epidemiology and other fields (Charniga et al. (2024) +). It also provides support for arbitrary +delay distributions, a range of common primary distributions, and allows +for truncation and secondary event censoring to be accounted for (Park et +al. (2024) ). A subset of common +distributions also have analytical solutions implemented, allowing for +faster computation. In addition, it provides multiple methods for fitting +primary event censored distributions to data via optional dependencies. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-ps.spec b/specs/R-CRAN-ps.spec index 0e35efc43..9e5acb5f6 100644 --- a/specs/R-CRAN-ps.spec +++ b/specs/R-CRAN-ps.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname ps -%global packver 1.8.0 +%global packver 1.8.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.8.0 +Version: 1.8.1 Release: 1%{?dist}%{?buildtag} Summary: List, Query, Manipulate System Processes diff --git a/specs/R-CRAN-quaxnat.spec b/specs/R-CRAN-quaxnat.spec index f4d963f62..4d1ce3070 100644 --- a/specs/R-CRAN-quaxnat.spec +++ b/specs/R-CRAN-quaxnat.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname quaxnat -%global packver 1.0.0 +%global packver 1.0.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.0.0 +Version: 1.0.1 Release: 1%{?dist}%{?buildtag} Summary: Estimation of Natural Regeneration Potential @@ -27,7 +27,7 @@ Functions for estimating the potential dispersal of tree species using regeneration densities and dispersal distances to nearest seed trees. A quantile regression is implemented to determine the dispersal potential. Spatial prediction can be used to identify natural regeneration potential -for forest restoration as described in Axer et al. (2021) +for forest restoration as described in Axer et al (2021) . %prep diff --git a/specs/R-CRAN-rgl.spec b/specs/R-CRAN-rgl.spec index d0c96d87e..d4f688e36 100644 --- a/specs/R-CRAN-rgl.spec +++ b/specs/R-CRAN-rgl.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname rgl -%global packver 1.3.1 +%global packver 1.3.12 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3.1 +Version: 1.3.12 Release: 1%{?dist}%{?buildtag} Summary: 3D Visualization Using OpenGL diff --git a/specs/R-CRAN-rsconnect.spec b/specs/R-CRAN-rsconnect.spec index ff453262c..91d8ca3d7 100644 --- a/specs/R-CRAN-rsconnect.spec +++ b/specs/R-CRAN-rsconnect.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname rsconnect -%global packver 1.3.1 +%global packver 1.3.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 1.3.1 +Version: 1.3.2 Release: 1%{?dist}%{?buildtag} Summary: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io', and 'RPubs' diff --git a/specs/R-CRAN-standby.spec b/specs/R-CRAN-standby.spec index 57ed7fecc..6ce78dbd0 100644 --- a/specs/R-CRAN-standby.spec +++ b/specs/R-CRAN-standby.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname standby -%global packver 0.1.0 +%global packver 0.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 0.1.0 +Version: 0.2.0 Release: 1%{?dist}%{?buildtag} Summary: Alerts, Notifications and Loading Screen in 'Shiny' diff --git a/specs/R-CRAN-stochvol.spec b/specs/R-CRAN-stochvol.spec index d8b7939bf..c365aa997 100644 --- a/specs/R-CRAN-stochvol.spec +++ b/specs/R-CRAN-stochvol.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname stochvol -%global packver 3.2.4 +%global packver 3.2.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.2.4 +Version: 3.2.5 Release: 1%{?dist}%{?buildtag} Summary: Efficient Bayesian Inference for Stochastic Volatility (SV) Models diff --git a/specs/R-CRAN-tapLock.spec b/specs/R-CRAN-tapLock.spec new file mode 100644 index 000000000..6df4bc2dc --- /dev/null +++ b/specs/R-CRAN-tapLock.spec @@ -0,0 +1,75 @@ +%global __brp_check_rpaths %{nil} +%global __requires_exclude ^libmpi +%global packname tapLock +%global packver 0.2.0 +%global rlibdir /usr/local/lib/R/library + +Name: R-CRAN-%{packname} +Version: 0.2.0 +Release: 1%{?dist}%{?buildtag} +Summary: Seamless Single Sign-on for 'shiny' + +License: MIT + file LICENSE +URL: https://cran.r-project.org/package=%{packname} +Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz + + +BuildRequires: R-devel +Requires: R-core +BuildArch: noarch +BuildRequires: R-CRAN-tower >= 0.2.0 +BuildRequires: R-CRAN-curl +BuildRequires: R-CRAN-glue +BuildRequires: R-CRAN-httr2 +BuildRequires: R-CRAN-jose +BuildRequires: R-CRAN-lubridate +BuildRequires: R-CRAN-promises +BuildRequires: R-CRAN-purrr +BuildRequires: R-stats +BuildRequires: R-CRAN-stringr +BuildRequires: R-CRAN-shiny +Requires: R-CRAN-tower >= 0.2.0 +Requires: R-CRAN-curl +Requires: R-CRAN-glue +Requires: R-CRAN-httr2 +Requires: R-CRAN-jose +Requires: R-CRAN-lubridate +Requires: R-CRAN-promises +Requires: R-CRAN-purrr +Requires: R-stats +Requires: R-CRAN-stringr +Requires: R-CRAN-shiny + +%description +Swift and seamless Single Sign-On (SSO) integration. Designed for +effortless compatibility with popular Single Sign-On providers like Google +and Microsoft, it streamlines authentication, enhancing both user +experience and application security. Elevate your 'shiny' applications for +a simplified, unified, and secure authentication process. + +%prep +%setup -q -c -n %{packname} + +# fix end of executable files +find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; +# prevent binary stripping +[ -d %{packname}/src ] && find %{packname}/src -type f -exec \ + sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true +[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ + sed -i 's@-g0@@g' {} \; || true +# don't allow local prefix in executable scripts +find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; + +%build + +%install + +mkdir -p %{buildroot}%{rlibdir} +%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -f %{buildroot}%{rlibdir}/R.css +# remove buildroot from installed files +find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; + +%files +%{rlibdir}/%{packname} diff --git a/specs/R-CRAN-withr.spec b/specs/R-CRAN-withr.spec index 849812bbc..0ec1ceae2 100644 --- a/specs/R-CRAN-withr.spec +++ b/specs/R-CRAN-withr.spec @@ -1,11 +1,11 @@ %global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname withr -%global packver 3.0.1 +%global packver 3.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} -Version: 3.0.1 +Version: 3.0.2 Release: 1%{?dist}%{?buildtag} Summary: Run Code 'With' Temporarily Modified Global State