/usr/include/NativeJIT/Function.h:192:44: internal compiler error: in cp_parser_template_id, at cp/parser.cc

[sagitter]

Hi all.

I'm no longer able to build COPASI with JIT enabled in Fedora 36+ x86_64 where GCC-12.0.1 is the new default compiler; g++ fails with following error:

[  6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o
cd /builddir/build/BUILD/COPASI-Build-251/build/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-251 -I/builddir/build/BUILD/COPASI-Build-251/build -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-251/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-251/copasi/CopasiSBW -I/usr/include/flexiblas -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/COPASI-Build-251/.package_note-COPASI-4.34.251-2.fc36.x86_64.ld -msse4.2 -fno-strict-aliasing -fPIC  -I/builddir/build/BUILD/COPASI-Build-251/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-251/copasi/CopasiSBW -I/usr/include/flexiblas -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/COPASI-Build-251/.package_note-COPASI-4.34.251-2.fc36.x86_64.ld -DNDEBUG -std=gnu++17 -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -c /builddir/build/BUILD/COPASI-Build-251/copasi/function/CEvaluationNodeOperator.cpp
*** WARNING *** there are active plugins, do not report this as a bug unless you can reproduce it without enabling any plugins.
Event                            | Plugins
PLUGIN_FINISH_UNIT               | annobin: Generate final annotations
PLUGIN_START_UNIT                | annobin: Generate global annotations
PLUGIN_ALL_PASSES_START          | annobin: Generate per-function annotations
PLUGIN_ALL_PASSES_END            | annobin: Register per-function end symbols
In file included from /builddir/build/BUILD/COPASI-Build-251/copasi/math/CJitCompiler.h:15,
                 from /builddir/build/BUILD/COPASI-Build-251/copasi/math/CMathContainer.h:35,
                 from /builddir/build/BUILD/COPASI-Build-251/copasi/function/CEvaluationNodeOperator.cpp:35:
/usr/include/NativeJIT/Function.h: In constructor 'NativeJIT::Function<R, P1, P2, P3, P4>::Function(Allocators::IAllocator&, NativeJIT::FunctionBuffer&)':
/usr/include/NativeJIT/Function.h:192:44: internal compiler error: in cp_parser_template_id, at cp/parser.cc:18367
  192 |         m_p1 = &this->template Parameter<P1>(slotAllocator);
      |                                            ^
Please submit a full bug report, with preprocessed source (by using -freport-bug).
See <http://bugzilla.redhat.com/bugzilla> for instructions.
Preprocessed source stored into /tmp/ccjL346W.out file, please attach this to your bugreport.
make[2]: *** [copasi/CMakeFiles/libCOPASISE-core.dir/build.make:1330: copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o] Error 1

So i'm forced to use the CMake option -DENABLE_JIT:BOOL=OFF to skip this error.

[fbergmann]

given that it states its an internal compiler error, i'm not sure what we can do here. @shoops stefan, do you have an idea?

[shoops]

Hello Antonio This has to be reported to gcc or the annobin plugin providers. I would try to disable annobin first. If the problem persists it is a gcc problem. If not it is a annobin problem. The flag to disable the annobin plugin is: -fplugin-arg-annobin-disable Thanks, Stefan

[sagitter]

GCC problem:

[  6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o
cd /builddir/build/BUILD/COPASI-Build-251/build/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-251 -I/builddir/build/BUILD/COPASI-Build-251/build -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fplugin=annobin -fplugin-arg-annobin-disable -I/builddir/build/BUILD/COPASI-Build-251/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-251/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/COPASI-Build-251/.package_note-COPASI-4.34.251-4.fc37.x86_64.ld -msse4.2 -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fplugin=annobin -fplugin-arg-annobin-disable -I/builddir/build/BUILD/COPASI-Build-251/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-251/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/COPASI-Build-251/.package_note-COPASI-4.34.251-4.fc37.x86_64.ld -DNDEBUG -std=gnu++17 -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -c /builddir/build/BUILD/COPASI-Build-251/copasi/function/CEvaluationNodeOperator.cpp
In file included from /builddir/build/BUILD/COPASI-Build-251/copasi/math/CJitCompiler.h:15,
                 from /builddir/build/BUILD/COPASI-Build-251/copasi/math/CMathContainer.h:35,
                 from /builddir/build/BUILD/COPASI-Build-251/copasi/function/CEvaluationNodeOperator.cpp:35:
/usr/include/NativeJIT/Function.h: In constructor 'NativeJIT::Function<R, P1, P2, P3, P4>::Function(Allocators::IAllocator&, NativeJIT::FunctionBuffer&)':
/usr/include/NativeJIT/Function.h:192:44: internal compiler error: in cp_parser_template_id, at cp/parser.cc:18367
  192 |         m_p1 = &this->template Parameter<P1>(slotAllocator);
      |                                            ^
Please submit a full bug report, with preprocessed source (by using -freport-bug).

GCC bug #104235 says fixed (??)

[sagitter]

GCC bug #104608