diff --git a/im2deep/__init__.py b/im2deep/__init__.py index d1be004..c7e6b2e 100644 --- a/im2deep/__init__.py +++ b/im2deep/__init__.py @@ -1,3 +1,3 @@ """IM2Deep: Deep learning framework for peptide collisional cross section prediction.""" -__version__ = "0.1.9" +__version__ = "0.2.0" diff --git a/im2deep/im2deep.py b/im2deep/im2deep.py index 9363144..7bd43df 100644 --- a/im2deep/im2deep.py +++ b/im2deep/im2deep.py @@ -31,7 +31,7 @@ def predict_ccs( if model_name == "tims": path_model = Path(__file__).parent / "models" / "TIMS" - path_model_list = list(path_model.glob("*.hdf5")) + path_model_list = list(path_model.glob("*.keras")) if use_single_model: LOGGER.debug("Using model {}".format(path_model_list[2])) path_model_list = [path_model_list[2]] diff --git a/im2deep/models/TIMS/full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.hdf5 b/im2deep/models/TIMS/full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.keras similarity index 64% rename from im2deep/models/TIMS/full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.hdf5 rename to im2deep/models/TIMS/full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.keras index 083c28d..61ba2b9 100644 Binary files a/im2deep/models/TIMS/full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.hdf5 and b/im2deep/models/TIMS/full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.keras differ diff --git a/im2deep/models/TIMS/full_hc_peprec_CCS_v4_8c22d89667368f2f02ad996469ba157e.hdf5 b/im2deep/models/TIMS/full_hc_peprec_CCS_v4_8c22d89667368f2f02ad996469ba157e.hdf5 deleted file mode 100644 index 6c19df3..0000000 Binary files a/im2deep/models/TIMS/full_hc_peprec_CCS_v4_8c22d89667368f2f02ad996469ba157e.hdf5 and /dev/null differ diff --git a/im2deep/models/TIMS/full_hc_peprec_CCS_v4_8c22d89667368f2f02ad996469ba157e.keras b/im2deep/models/TIMS/full_hc_peprec_CCS_v4_8c22d89667368f2f02ad996469ba157e.keras new file mode 100644 index 0000000..eec433c Binary files /dev/null and b/im2deep/models/TIMS/full_hc_peprec_CCS_v4_8c22d89667368f2f02ad996469ba157e.keras differ diff --git a/im2deep/models/TIMS/full_hc_peprec_CCS_v4_cb975cfdd4105f97efa0b3afffe075cc.hdf5 b/im2deep/models/TIMS/full_hc_peprec_CCS_v4_cb975cfdd4105f97efa0b3afffe075cc.keras similarity index 55% rename from im2deep/models/TIMS/full_hc_peprec_CCS_v4_cb975cfdd4105f97efa0b3afffe075cc.hdf5 rename to im2deep/models/TIMS/full_hc_peprec_CCS_v4_cb975cfdd4105f97efa0b3afffe075cc.keras index b592bc3..a0bf23f 100644 Binary files a/im2deep/models/TIMS/full_hc_peprec_CCS_v4_cb975cfdd4105f97efa0b3afffe075cc.hdf5 and b/im2deep/models/TIMS/full_hc_peprec_CCS_v4_cb975cfdd4105f97efa0b3afffe075cc.keras differ diff --git a/pyproject.toml b/pyproject.toml index 7e900d8..73541a2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -20,7 +20,7 @@ dynamic = ["version"] requires-python = ">=3.8" dependencies = [ "click", - "deeplc==2.2.38", + "deeplc", "psm_utils", "pandas", "numpy",