Error while running VIVA with docker

[dukelheit]

[18:1012/171858.521157:FATAL:atom_browser_client.cc(250)] Check failed: base::MakeAbsoluteFilePath(command_line->GetProgram()) == child_path.
ERROR: LoadError: IOError(EOFError() during request(http://localhost:7982))

Hello i'm getting this error after install docker and run

sudo docker run -it --rm -v "$PWD":/data compbiocore/viva-cli viva --save_remotely -f SitesOfInterest.vcf -s svg -o output

Stacktrace:
[1] read_to_buffer(::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, ::Int64) at /root/.julia/packages/HTTP/U2ZVp/src/ConnectionPool.jl:207
[2] readuntil(::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, ::Function, ::Int64) at /root/.julia/packages/HTTP/U2ZVp/src/ConnectionPool.jl:226
[3] readuntil at /root/.julia/packages/HTTP/U2ZVp/src/ConnectionPool.jl:224 [inlined]
[4] readheaders(::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, ::HTTP.Messages.Response) at /root/.julia/packages/HTTP/U2ZVp/src/Messages.jl:471
[5] startread(::HTTP.Streams.Stream{HTTP.Messages.Response,HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}}) at /root/.julia/packages/HTTP/U2ZVp/src/Streams.jl:153
[6] macro expansion at /root/.julia/packages/HTTP/U2ZVp/src/StreamRequest.jl:65 [inlined]
[7] macro expansion at ./task.jl:244 [inlined]
[8] #request#1(::Nothing, ::Nothing, ::Int64, ::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:status_exception,),Tuple{Bool}}}, ::Function, ::Type{HTTP.StreamRequest.StreamLayer}, ::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, ::HTTP.Messages.Request, ::String) at /root/.julia/packages/HTTP/U2ZVp/src/StreamRequest.jl:54
[9] (::getfield(HTTP, Symbol("#kw##request")))(::NamedTuple{(:iofunction, :status_exception),Tuple{Nothing,Bool}}, ::typeof(HTTP.request), ::Type{HTTP.StreamRequest.StreamLayer}, ::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, ::HTTP.Messages.Request, ::String) at ./none:0
[10] #request#1(::Nothing, ::Type, ::Int64, ::Base.Iterators.Pairs{Symbol,Union{Nothing, Bool},Tuple{Symbol,Symbol},NamedTuple{(:iofunction, :status_exception),Tuple{Nothing,Bool}}}, ::Function, ::Type{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer}}, ::HTTP.URIs.URI, ::HTTP.Messages.Request, ::String) at /root/.julia/packages/HTTP/U2ZVp/src/ConnectionRequest.jl:56
[11] (::getfield(HTTP, Symbol("#kw##request")))(::NamedTuple{(:iofunction, :status_exception),Tuple{Nothing,Bool}}, ::typeof(HTTP.request), ::Type{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer}}, ::HTTP.URIs.URI, ::HTTP.Messages.Request, ::String) at ./none:0
[12] (::getfield(Base, Symbol("###48#49#50")){ExponentialBackOff,getfield(HTTP.RetryRequest, Symbol("##2#3")){Bool,HTTP.Messages.Request},typeof(HTTP.request)})(::Base.Iterators.Pairs{Symbol,Union{Nothing, Bool},Tuple{Symbol,Symbol},NamedTuple{(:iofunction, :status_exception),Tuple{Nothing,Bool}}}, ::Function, ::Type, ::Vararg{Any,N} where N) at ./error.jl:231
[13] ##48#51 at ./none:0 [inlined]
[14] #request#1 at /root/.julia/packages/HTTP/U2ZVp/src/RetryRequest.jl:44 [inlined]
[15] #request at ./none:0 [inlined]
[16] #request#1(::VersionNumber, ::String, ::Nothing, ::Nothing, ::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:status_exception,),Tuple{Bool}}}, ::Function, ::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::String) at /root/.julia/packages/HTTP/U2ZVp/src/MessageRequest.jl:47
[17] (::getfield(HTTP, Symbol("#kw##request")))(::NamedTuple{(:status_exception,),Tuple{Bool}}, ::typeof(HTTP.request), ::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::String) at ./none:0
[18] #request#1(::Int64, ::Bool, ::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:status_exception,),Tuple{Bool}}}, ::Function, ::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::String) at /root/.julia/packages/HTTP/U2ZVp/src/RedirectRequest.jl:24
[19] (::getfield(HTTP, Symbol("#kw##request")))(::NamedTuple{(:status_exception,),Tuple{Bool}}, ::typeof(HTTP.request), ::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::String) at ./none:0
[20] #request#5(::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:status_exception,),Tuple{Bool}}}, ::Function, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::String) at /root/.julia/packages/HTTP/U2ZVp/src/HTTP.jl:300
[21] #request at ./none:0 [inlined]
[22] #request#6 at /root/.julia/packages/HTTP/U2ZVp/src/HTTP.jl:314 [inlined]
[23] #request at ./none:0 [inlined]
[24] #post#15 at /root/.julia/packages/HTTP/U2ZVp/src/HTTP.jl:396 [inlined]
[25] #post at ./none:0 [inlined]
[26] #savefig#1(::SubString{String}, ::Nothing, ::Nothing, ::Nothing, ::Function, ::IOStream, ::PlotlyBase.Plot{PlotlyBase.GenericTrace{Dict{Symbol,Any}}}) at /root/.julia/packages/ORCA/qEy7Y/src/ORCA.jl:35
[27] (::getfield(PlotlyBase, Symbol("#kw##savefig")))(::NamedTuple{(:format, :scale, :width, :height),Tuple{SubString{String},Nothing,Nothing,Nothing}}, ::typeof(PlotlyBase.savefig), ::IOStream, ::PlotlyBase.Plot{PlotlyBase.GenericTrace{Dict{Symbol,Any}}}) at ./none:0
[28] (::getfield(ORCA, Symbol("##3#4")){Nothing,Nothing,Nothing,PlotlyBase.Plot{PlotlyBase.GenericTrace{Dict{Symbol,Any}}}})(::IOStream) at /root/.julia/packages/ORCA/qEy7Y/src/ORCA.jl:71
[29] #open#310(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::getfield(ORCA, Symbol("##3#4")){Nothing,Nothing,Nothing,PlotlyBase.Plot{PlotlyBase.GenericTrace{Dict{Symbol,Any}}}}, ::String, ::Vararg{String,N} where N) at ./iostream.jl:375
[30] open at ./iostream.jl:373 [inlined]
[31] #savefig#2 at /root/.julia/packages/ORCA/qEy7Y/src/ORCA.jl:70 [inlined]
[32] savefig(::PlotlyBase.Plot{PlotlyBase.GenericTrace{Dict{Symbol,Any}}}, ::String) at /root/.julia/packages/ORCA/qEy7Y/src/ORCA.jl:65
[33] #savefig#52(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::PlotlyJS.SyncPlot, ::String) at /root/.julia/packages/PlotlyJS/I8Gki/src/savefig_orca.jl:1
[34] savefig at /root/.julia/packages/PlotlyJS/I8Gki/src/savefig_orca.jl:1 [inlined]
[35] save_graphic(::PlotlyJS.SyncPlot, ::String, ::String, ::String, ::Bool) at /root/.julia/packages/VariantVisualization/1yoNl/src/vcf_utils_complete.jl:1479
[36] top-level scope at /usr/local/bin/viva:479
[37] include at ./boot.jl:326 [inlined]
[38] include_relative(::Module, ::String) at ./loading.jl:1038
[39] include(::Module, ::String) at ./sysimg.jl:29
[40] exec_options(::Base.JLOptions) at ./client.jl:267
[41] _start() at ./client.jl:436
in expression starting at /usr/local/bin/viva:407

[gtollefson]

Hi @dukelheit ,

This look like an error originating with HTTP.jl on your setup. I'd recommend that you post an issue there to solve it. Let me know what they say.

-George