Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Unable to import episcanpy after successful pip install #140

Open
Sonali513 opened this issue Nov 24, 2024 · 0 comments
Open

Unable to import episcanpy after successful pip install #140

Sonali513 opened this issue Nov 24, 2024 · 0 comments

Comments

@Sonali513
Copy link

ImportError Traceback (most recent call last)
Cell In[5], line 1
----> 1 import episcanpy as epi

File ~\AppData\Roaming\Python\Python311\site-packages\episcanpy_init_.py:26
24 from . import tools as tl
25 from . import preprocessing as pp
---> 26 from . import count_matrix as ct
27 from . import plotting as pl
28 # import read functions

File ~\AppData\Roaming\Python\Python311\site-packages\episcanpy\count_matrix_init_.py:4
2 from ..count_matrix._features import load_features_gff, load_features_gtf
3 from ..count_matrix._load_input_file import read_cyt_summary
----> 4 from ..count_matrix._bld_met_mtx import build_count_mtx
5 from ..count_matrix._atac_mtx import bld_atac_mtx, save_sparse_mtx
6 from ..count_matrix._load_met_ct_mtx import load_met_noimput

File ~\AppData\Roaming\Python\Python311\site-packages\episcanpy\count_matrix_bld_met_mtx.py:2
1 import numpy as np
----> 2 from numpy import NaN
4 # chromosomes for 2 principal species. If you work with another genome
5 # the chromosomes will have to be specified
6 #HUMAN = ['1', '10', '11', '12', '13', '14', '15', '16', '17', '18', '19', '2',
...
9 # '3', '4', '5', '6', '7', '8', '9', 'X', 'Y']
10 # my favorite dataset ;-)
11 HEAD_Ecker = ['chr', 'pos', 'strand', 'mc_class', 'mc_count', 'total', 'methylated\n']

ImportError: cannot import name 'NaN' from 'numpy' (C:\Users\sonal\AppData\Roaming\Python\Python311\site-packages\numpy_init_.py)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant