LNX-docker-compose.yml

# docker-compose -f LNX-docker-compose.yml --env-file LNX.env up --build --exit-code-from app
version: '2.4'
x-net: &net
  networks:
    - main
services:
  db:
    <<: *net
    image: datajoint/mysql:${MYSQL_TAG}
    environment:
      - MYSQL_ROOT_PASSWORD=simple
  fakeservices.datajoint.io:
    <<: *net
    image: datajoint/nginx:v0.1.1
    environment:
    - ADD_db_TYPE=DATABASE
    - ADD_db_ENDPOINT=db:3306
    depends_on:
      db:
        condition: service_healthy
  app:
    <<: *net
    environment:
    - MATLAB_LICENSE
    - MATLAB_USER
    - DJ_HOST=fakeservices.datajoint.io
    - DJ_USER=root
    - DJ_PASS=simple
    - DJ_TEST_HOST=fakeservices.datajoint.io
    - DJ_TEST_USER=datajoint
    - DJ_TEST_PASSWORD=datajoint
    image: raphaelguzman/matlab:${MATLAB_VERSION}-MIN
    depends_on:
      fakeservices.datajoint.io:
        condition: service_healthy
    user: ${MATLAB_UID}:${MATLAB_GID}
    working_dir: /main
    command:
      - /bin/bash
      - -c
      - |
        set -e
        export ORIG_DIR=$$(pwd)
        mkdir ~/Documents
        cd /src
        # Verify all mex have been updated
        if [ "distribution/mexa64/mym.mexa64" -nt "distribution/mexmaci64/mym.mexmaci64" ]; then
          echo "MACOS64 Mex binary appears outdated. Failing check..."
          exit 1
        fi
        if [ "distribution/mexa64/mym.mexa64" -nt "distribution/mexw64/mym.mexw64" ]; then
          echo "WIN64 Mex binary appears outdated. Failing check..."
          exit 1
        fi
        # Compile mym, package into toolbox, and install
        matlab -nodisplay -r "
          try\
            websave([tempdir 'GHToolbox.mltbx'],\
                    ['https://github.com/datajoint/GHToolbox' \
                     '/releases/download/' subsref(webread(['https://api.github.com/repos' \
                                                            '/datajoint/GHToolbox' \
                                                            '/releases/latest']),\
                                                   substruct('.', 'tag_name')) \
                     '/GHToolbox.mltbx']);\
            matlab.addons.toolbox.installToolbox([tempdir 'GHToolbox.mltbx']);\
            origDir = pwd;\
            cd('distribution/mexa64');\
            docs = help('mym');\
            cd(origDir);\
            ghtb.package('mym',\
                         'Raphael Guzman',\
                         'raphael.h.guzman@gmail.com',\
                         ['MySQL API for MATLAB with support for BLOB objects'],\
                         docs,\
                         {'.vscode', '.git', '.gitignore', 'build', 'lib', 'maria-plugin',\
                          'mex_compilation', 'mysql-connector', 'notebook', 'src', 'zlib',\
                          '*.txt', '*.env', '*.prf', '*.md', '*.yml', 'tests', '.github',\
                          'distribution/mexa64/libmysqlclient.so.18.4.'},\
                         @() strjoin(arrayfun(@(x) num2str(x),\
                                              cell2mat(struct2cell(mym('version'))),\
                                              'uni', false),\
                                     '.'),\
                         {'distribution/mexa64', 'distribution/mexmaci64',\
                          'distribution/mexw64', 'mym.m'},\
                         'toolboxVersionDir', 'distribution/mexa64',\
                         'toolboxRootDir', '.');\
            matlab.addons.toolbox.installToolbox('mym.mltbx');\
            cd(getenv('ORIG_DIR'));\
            addpath('tests');\
            res=run(Main);\
            disp(res);\
            if all([res.Passed])  exit, else exit(1), end;\
            ,\
          catch ME,\
            disp(getReport(ME, 'extended'));\
            exit(1);\
            ,\
          end;\
        "
    mac_address: $MATLAB_HOSTID
    volumes:
      - ./tests:/main/tests
      - .:/src
networks:
  main: