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macros_bifbox.idp
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macros_bifbox.idp
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//
// macros_bifbox.idp
// Chris Douglas
//
// NOTE: This file should not be changed unless you know what you're doing.
//
cout.precision(12);
string workdir = getARGV("-dir","./data/"); // set working directory
if (workdir(workdir.length-1:workdir.length-1) != "/") workdir = workdir + "/";
int paraviewflag = getARGV("-pv", 0); // indicate whether solution is saved for Paraview
// paraviewflag <= 0: don't save data in Paraview format (only in FF format)
// paraviewflag == 1: save in Paraview format on current mesh
// paraviewflag >= 2: save in Paraview format on 2x, 3x, ... refined mesh using meshsplit
// If settings file does not define a coordinate transform.
IFMACRO(!coordinatetransform)
IFMACRO(dimension,2)
macro coordinatetransform() x, y // EOM
ENDIFMACRO
IFMACRO(dimension,3)
macro coordinatetransform() x, y, z // EOM
ENDIFMACRO
ENDIFMACRO
// Parse mesh or solution filename
func string parsefilename(string & filename, string & fileroot){
string fileext;
if(filename.rfind(".") > 0){ // filename includes extension
fileext = filename(filename.rfind(".")+1:filename.length-1); // get file extension
fileroot = filename(0:filename.rfind(".")-1); // get file root
}
else {
fileroot = filename;
fileext = "";
}
return fileext;
}
// Parse symmetry string
func real[int] parsesymstr(string & symstr){
int fidx = -1;
string symmstr = symstr;
real[int] symm(sym.n);
for (int kk = 0; kk < sym.n; ++kk){
if (sym.n > 0){
symmstr = symmstr(fidx+1:symmstr.length);
fidx = symmstr.find(",");
if (fidx==-1) fidx = symmstr.length;
symm(kk) = strtod(symmstr(0:fidx-1));
}
}
return symm;
}
// Get symmetry values as string
func string listsym(real[int] & sym){
string stringout;
for (int k = 0; k < sym.n; ++k){
if (k == 0) stringout = string(sym(0));
else stringout = stringout + "," + string(sym(k));
}
return stringout;
}
// Define local/global mesh variables
meshN Th; // local mesh
meshN Thg; // global mesh
fespace Xh(Th, Pkf); // local FEspace
fespace Xhg(Thg, Pkf); // global FEspace
fespace XMh(Th, Pk); // local FEspace
fespace XMhg(Thg, Pk); // global FEspace
// Initialize parallel local/global numbering arrays
int[int] n2o, restu, restf;
macro ThN2O()n2o// EOM
// Initialize parameter/monitor arrays
real[string] params, monitors;
// Set parameter values
func int setparams(string[int] & paramnames, real[string] & params){
for (int k = 0; k < paramnames.n; ++k){
params[paramnames[k]] = getARGV("-" + paramnames[k], params[paramnames[k]]);
}
return 0;
}
// Get parameter values
func string listparams(string[int] & paramnames, real[string] & params){
string stringout;
for (int k = 0; k < paramnames.n; ++k){
if (k == 0) stringout = paramnames[k] + " = " + params[paramnames[k]];
else stringout = stringout + ", " + paramnames[k] + " = " + params[paramnames[k]];
}
return stringout;
}
macro createMatu(th,A,P){
NewMacro def(u)defu(u) EndMacro
NewMacro init(i)initu(i) EndMacro
createMat(th,A,P)
} // EOM
macro createMatf(th,A,P){
NewMacro def(u)deff(u) EndMacro
NewMacro init(i)initf(i) EndMacro
createMat(th,A,P)
} // EOM
macro adaptmeshoptions()
hmin = getARGV("-hmin", 1.0e-6),
hmax = getARGV("-hmax", 1.0e+2),
err = getARGV("-err", 1.0e-2),
errg = getARGV("-errg", 1.0e-2),
nbvx = int(getARGV("-nbvx", 1e+6)),
nbsmooth = int(getARGV("-nbsmooth", 5)),
ratio = getARGV("-ratio",1.8),
iso = bool(getARGV("-anisomax", 1.0) <= 1.0),
anisomax = getARGV("-anisomax", 1.0),
rescaling = bool(getARGV("-rescaling", 1)),
power = getARGV("-power", 1.0),
thetamax = getARGV("-thetamax", 10)
//EOM
macro StepAdaptMonitors(Rvec, qa, qap, yqP, yqP0)
real ipl = real(Rvec'*Rvec);
mpiAllReduce(ipl, res, mpiCommWorld, mpiSUM);
res = sqrt(res);
string text1;
if (!adaptflag) text1 = count + "-" + it;
else text1 = "A" + (count-1) + "-" + it;
if(internalit > 0) text1 = text1 + ">" + internalit;
if (it == 0){
kappa = 0.0;
maxdelta = 0.0;
cosalpha = 0.0;
delta = abs(h0);
}
else {
PetscScalar[int] qdiff = qa - qap;
ipl = real(qdiff'*qdiff);
mpiAllReduce(ipl, delta, mpiCommWorld, mpiSUM);
delta = sqrt(delta);
real ip1, ip1l = real(yqP0'*yqP), ip2, ip2l = real(yqP0'*yqP0), ip3, ip3l = real(yqP'*yqP);
mpiAllReduce(ip1l, ip1, mpiCommWorld, mpiSUM);
mpiAllReduce(ip2l, ip2, mpiCommWorld, mpiSUM);
mpiAllReduce(ip3l, ip3, mpiCommWorld, mpiSUM);
cosalpha = (ip1 + 1.0)/sqrt((ip2 + 1.0)*(ip3 + 1.0));
kappa = max(delta/deltap, kappa);
maxdelta = max(delta, maxdelta);
}
f = max(acos(abs(cosalpha))/anglemax*fmax, sqrt(maxdelta/deltamax)*fmax, sqrt(kappa/kappamax)*fmax, 1./fmax);
if (it > 0 && !adaptflag && (f > fmax || it-1 >= snesmaxit || res*(monotone!=0) > resp)) Rvec(0) = NaN();
++internalit;
//EOM
macro ResidualHB(RHB, J, ub, uh, sym1, omega) {
sym = 0;
real[int] Rtemp, R = vR(0, XMh, tgv = -1);
for (int nh = 0; nh < Nh; nh++){
um[] = uh(:, nh);
um2[] = conj(um[]);
ik.im = (1+nh)*sym1;
ik2 = conj(ik);
complex[int] Rc = vH(0, XMh, tgv = -10);
R += Rc.re;
}
ChangeNumbering(J, R, Rtemp);
RHB(0:J.n-1) = Rtemp;
for (int nh = 0; nh < Nh; ++nh) {
complex[int] Rc(ub[].n);
sym = (1+nh)*sym1;
iomega = 1i*(1+nh)*omega;
for (int harm = 0; harm < Nh; harm++){
um[] = uh(:, harm);
ik.im = (1+harm)*sym1;
if (harm < nh){
um2[] = 0.5*uh(:, nh-harm-1);
ik2.im = (nh-harm)*sym1;
Rc += vH(0, XMh, tgv = -10);
}
else if (harm == nh) Rc += vJ(0, XMh, tgv = -1);
else { /* if (harm > nh) */
um2[] = conj(uh(:, harm-nh-1));
ik2.im = -(harm-nh)*sym1;
Rc += vH(0, XMh, tgv = -10);
}
}
ChangeNumbering([J, J], [Rc.re, Rc.im], Rtemp);
RHB((1+2*nh)*J.n:(3+2*nh)*J.n-1) = Rtemp;
}
}//EOM
macro JacobianHB(JHB, J, ub, uh, sym1, omega) {
sym = 0;
ik = 0;
iomega = 0;
matrix<complex> Cmat = vJ(XMh, XMh, tgv = -1);
matrix An1r = Cmat.re, An2r, An3r, An1i, An2i, An3i;
Mat row1(J), row2, row3, A1(J), A2(J), temp;
row1 = An1r;
for (int n = 0; n < Nh; n++){
um[] = 2.0*uh(:, n);
ik.im = (1+n)*sym1;
ik2.im = -(1+n)*sym1;
Cmat = vH(XMh, XMh, tgv = -10);
An1r = Cmat.re;
ChangeOperator(A1, An1r);
An2r = Cmat.im;
ChangeOperator(A2, An2r);
temp = [[row1, A1, A2]];
MatConvert(temp, row1);
}
for (int n = 0; n < Nh; n++){
sym = (1+n)*sym1;
um[] = uh(:, n);
ik.im = (1+n)*sym1;
ik2 = 0;
Cmat = vH(XMh, XMh, tgv = -10);
An1r = Cmat.re;
ChangeOperator(A1, An1r);
MatConvert(A1, row2);
An1i = Cmat.im;
ChangeOperator(A2, An1i);
MatConvert(A2, row3);
for (int j = 0; j < Nh; j++){
if (j < n){ /*subharmonics*/
um[] = uh(:, n-j-1);
ik.im = (n-j)*sym1;
ik2.im = (1+j)*sym1;
Cmat = vH(XMh, XMh, tgv = -10);
} else if (j == n) { /*diagonal*/
iomega = 1i*(1+n)*omega;
ik.im = (1+n)*sym1;
Cmat = vJ(XMh, XMh, tgv = -1);
} else { /*if (j > n) superharmonics*/
um[] = conj(uh(:, j-n-1));
ik.im = -(j-n)*sym1;
ik2.im = (1+j)*sym1;
Cmat = vH(XMh, XMh, tgv = -10);
}
An2r = Cmat.re;
An2i = Cmat.im;
An3r = -An2i;
An3i = Cmat.re;
if (1+j+n < Nh) {
um[] = uh(:, 1+n+j);
ik.im = (2+n+j)*sym1;
ik2.im = -(1+j)*sym1;
Cmat = vH(XMh, XMh, tgv = -10);
An2r += Cmat.re;
An2i += Cmat.im;
An3r += Cmat.im;
An3i -= Cmat.re;
}
ChangeOperator(A1, An2r);
ChangeOperator(A2, An3r);
temp = [[row2, A1, A2]];
MatConvert(temp, row2);
ChangeOperator(A1, An2i);
ChangeOperator(A2, An3i);
temp = [[row3, A1, A2]];
MatConvert(temp, row3);
}
temp = [[row1], [row2], [row3]];
MatConvert(temp, row1);
}
JHB = row1;
} // EOM
// FUNCTIONS -------------------------------------------------------------------
macro savebase(basefileout, statsfile, meshfile, saveflag, monitorflag){
IFMACRO(getmonitors)
XMhg defu(tempu), defu(ubg), defu(umg), defu(umag);
tempu[](restu) = ub[];
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
if(monitorflag) getmonitors;
ENDIFMACRO
if(mpirank == 0 && monitorflag) {
if(paramnames[0] != "") cout << "\t" << listparams(paramnames, params);
if(monitornames[0] != "") cout << ", " << listparams(monitornames, monitors);
cout << "." << endl;
}
if (mpirank == 0 && statsfile != "") {
cout << " Saving solution stats to '" + statsfile + ".base.cont' in '" + workdir + "'." << endl;
string dummy = basefileout;
{
ofstream file(workdir + statsfile + ".base.cont", append);
file.precision(17);
file << basefileout + ((dummy.rfind(".") > 0) ? "" : ".base") << "\t" << meshfile;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << params[paramnames[k]];
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << "\t" << monitors[monitornames[k]];
}
}
file << endl;
}
}
if (saveflag && basefileout != ""){
IFMACRO(!getmonitors)
XMhg defu(tempu), defu(ubg), defu(umg), defu(umag);
tempu[](restu) = ub[];
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
ENDIFMACRO
if(mpirank == 0){
cout << " Saving '" + basefileout + ".base' on '" + meshfile + "' in '" + workdir + "'." << endl;
{
ofstream file(workdir + basefileout + ".base", binary);
file.precision(17);
file << "mesh\t" << meshfile << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << paramnames[k] << "\t" << params[paramnames[k]] << endl;
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << monitornames[k] << "\t" << monitors[monitornames[k]] << endl;
}
}
file << ubg[] << endl;
}
if (paraviewflag > 0){
cout << " Saving '" + basefileout + "_base.vtu' in '" + workdir + "'." << endl;
meshN Thgpv;
real[int] qpv = ubg[];
if (paraviewflag > 1){
meshN Thgs = trunc(Thg, 1, split = paraviewflag);
fespace XMhs(Thgs, Pk);
XMhs defu(us) = defu(ubg);
qpv.resize(us[].n);
qpv = us[];
Thgpv = movemesh(Thgs, [coordinatetransform]);
}
else Thgpv = movemesh(Thg, [coordinatetransform]);
fespace XMhgpv(Thgpv, Pk);
XMhgpv defu(ugr);
ugr[] = qpv;
savevtk(workdir + basefileout + "_base.vtu", Thgpv, adaptu(ugr), dataname = ParaviewDataName, order = ParaviewOrder);
}
}
}
}//EOM
macro savemode(modefileout, statsfile, basefile, meshfile, evecs, evals, sym, saveflag){
if(mpirank == 0){
cout << "\teval(s) = [" + evals(0);
for (int kk = 1; kk < evals.n; ++kk) cout << ", " + evals(kk);
cout << "]";
if(sym.n > 0) cout << ", sym = " + listsym(sym);
if(paramnames[0] != "") cout << ", " + listparams(paramnames, params);
if(monitornames[0] != "") cout << ", " + listparams(monitornames, monitors);
cout << "." << endl;
}
if(mpirank == 0 && statsfile != "") {
cout << " Saving " + evals.n + " eigenvalues to '" + statsfile + ".mode.stat' in '" + workdir + "'." << endl;
for (int ii = 0; ii < evals.n; ++ii){
ofstream file(workdir + statsfile + ".mode.stat", append);
file.precision(17);
file << basefile << "\t" << meshfile << "\t" << evals(ii);
if(sym.n > 0) file << "\t" << listsym(sym);
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << params[paramnames[k]];
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << "\t" << monitors[monitornames[k]];
}
}
file << endl;
}
}
if(saveflag && modefileout != ""){
XMhg<complex> defu(cplxu), defu(umg);
for (int ii = 0; ii < evals.n; ++ii){
um[] = evecs[ii][];
cplxu[](restu) = um[];
mpiAllReduce(cplxu[], umg[], mpiCommWorld, mpiSUM);
string modefileout0 = modefileout + ((ii > 0) ? ("_" + ii) : "");
if (mpirank == 0){
cout << " Saving '" + modefileout0 + ".mode' over '" + basefile + "' on '" + meshfile + "' in '" + workdir + "'." << endl;
{
ofstream file(workdir + modefileout0 + ".mode", binary);
file.precision(17);
file << "mesh\t" << meshfile << endl;
file << "file\t" << basefile << endl;
file << "eval\t" << evals(ii) << endl;
if(sym.n > 0) file << "sym\t" << listsym(sym) << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << paramnames[k] << "\t" << params[paramnames[k]] << endl;
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << monitornames[k] << "\t" << monitors[monitornames[k]] << endl;
}
}
file << umg[] << endl;
}
if (paraviewflag > 0){
cout << " Saving '" + modefileout0 + "_mode.vtu' in '" + workdir + "'." << endl;
meshN Thgpv;
complex[int] qpv = umg[];
if (paraviewflag > 1){
meshN Thgs = trunc(Thg, 1, split = paraviewflag);
fespace XMhs(Thgs, Pk);
XMhs<complex> defu(us) = defu(umg);
qpv.resize(us[].n);
qpv = us[];
Thgpv = movemesh(Thgs, [coordinatetransform]);
}
else Thgpv = movemesh(Thg, [coordinatetransform]);
fespace XMhgpv(Thgpv, Pk);
XMhgpv defu(ugr), defu(ugi);
ugr[] = qpv.re;
ugi[] = qpv.im;
savevtk(workdir + modefileout0 + "_mode.vtu", Thgpv, adaptu(ugr), adaptu(ugi), dataname = ParaviewDataNamec, order = ParaviewOrderc);
}
}
}
}
}//EOM
macro saveresp(respfileout, statsfile, basefile, meshfile, sym, omega, saveflag, monitorflag){
IFMACRO(getmonitors)
XMhg defu(tempu), defu(ubg);
XMhg<complex> defu(cplxu), defu(umg), defu(umag);
tempu[](restu) = ub[];
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
cplxu[](restu) = um[];
mpiAllReduce(cplxu[], umg[], mpiCommWorld, mpiSUM);
if(monitorflag) getmonitors;
ENDIFMACRO
if(mpirank == 0 && monitorflag){
cout << "\tomega = " + omega;
if(sym.n > 0) cout << ", sym = " + listsym(sym);
if(paramnames[0] != "") cout << ", " + listparams(paramnames, params);
if(monitornames[0] != "") cout << ", " + listparams(monitornames, monitors);
cout << "." << endl;
}
if(mpirank == 0 && statsfile != "") {
cout << " Saving solution stats to '" + statsfile + ".resp.stat' in '" + workdir + "'." << endl;
{
ofstream file(workdir + statsfile + ".resp.stat", append);
file.precision(17);
file << basefile << "\t" << meshfile << "\t" << omega;
if(sym.n > 0) file << "\t" << listsym(sym);
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << params[paramnames[k]];
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << "\t" << monitors[monitornames[k]];
}
}
file << endl;
}
}
if(saveflag && respfileout != ""){
IFMACRO(!getmonitors)
XMhg<complex> defu(cplxu), defu(umg), defu(umag);
cplxu[](restu) = um[];
mpiAllReduce(cplxu[], umg[], mpiCommWorld, mpiSUM);
ENDIFMACRO
if (mpirank == 0){
cout << " Saving '" + respfileout + ".resp' over '" + basefile + "' on '" + meshfile + "' in '" + workdir + "'." << endl;
{
ofstream file(workdir + respfileout + ".resp", binary);
file.precision(17);
file << "mesh\t" << meshfile << endl;
file << "file\t" << basefile << endl;
file << "omega\t" << omega << endl;
if(sym.n > 0) file << "sym\t" << listsym(sym) << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << paramnames[k] << "\t" << params[paramnames[k]] << endl;
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << monitornames[k] << "\t" << monitors[monitornames[k]] << endl;
}
}
file << umg[] << endl;
}
if (paraviewflag > 0){
cout << " Saving '" + respfileout + "_resp.vtu' in '" + workdir + "'." << endl;
meshN Thgpv;
complex[int] qpv = umg[];
if (paraviewflag > 1){
meshN Thgs = trunc(Thg, 1, split = paraviewflag);
fespace XMhs(Thgs, Pk);
XMhs<complex> defu(us) = defu(umg);
qpv.resize(us[].n);
qpv = us[];
Thgpv = movemesh(Thgs, [coordinatetransform]);
}
else Thgpv = movemesh(Thg, [coordinatetransform]);
fespace XMhgpv(Thgpv, Pk);
XMhgpv defu(ugr), defu(ugi);
ugr[] = qpv.re;
ugi[] = qpv.im;
savevtk(workdir + respfileout + "_resp.vtu", Thgpv, adaptu(ugr), adaptu(ugi), dataname = ParaviewDataNamec, order = ParaviewOrderc);
}
}
}
}//EOM
macro saverslv(rslvfileout, statsfile, basefile, meshfile, fvecs, uvecs, gains, sym, omega, saveflag){
if(mpirank == 0){
cout << "\tomega = " + omega + ", gain(s) = [" + gains(0);
for (int kk = 1; kk < gains.n; ++kk) cout << ", " + gains(kk);
cout << "]";
if(sym.n > 0) cout << ", sym = " + listsym(sym);
if(paramnames[0] != "") cout << ", " + listparams(paramnames, params);
if(monitornames[0] != "") cout << ", " + listparams(monitornames, monitors);
cout << "." << endl;
}
if(mpirank == 0 && statsfile != "") {
cout << " Saving " + gains.n + " optimal gain(s) to '" + statsfile + ".rslv.stat' in '" + workdir + "'." << endl;
for (int kk = 0; kk < gains.n; ++kk){
ofstream file(workdir + statsfile + ".rslv.stat", append);
file.precision(17);
file << basefile << "\t" << meshfile << "\t" << omega << "\t" << gains(kk);
if(sym.n > 0) file << "\t" << listsym(sym);
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << params[paramnames[k]];
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << "\t" << monitors[monitornames[k]];
}
}
file << endl;
}
}
if(saveflag && rslvfileout != ""){
Xhg<complex> deff(tempf), deff(fmg);
XMhg<complex> defu(tempu), defu(umg);
for (int ii = 0; ii < gains.n; ++ii){
fm[] = fvecs[ii][];
um[] = uvecs[ii][];
tempu[](restu) = um[];
mpiAllReduce(tempu[], umg[], mpiCommWorld, mpiSUM);
tempf[](restf) = fm[];
mpiAllReduce(tempf[], fmg[], mpiCommWorld, mpiSUM);
string fileout = rslvfileout + ((ii > 0) ? ("_" + ii) : "");
if (mpirank == 0){
cout << " Saving '" + fileout + ".rslv' over '" + basefile + "' on '" + meshfile + "' in '" + workdir + "'." << endl;
{
ofstream file(workdir + fileout + ".rslv", binary);
file.precision(17);
file << "mesh\t" << meshfile << endl;
file << "file\t" << basefile << endl;
file << "omega\t" << omega << endl;
file << "gain\t" << gains(ii) << endl;
if(sym.n > 0) file << "sym\t" << listsym(sym) << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << paramnames[k] << "\t" << params[paramnames[k]] << endl;
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << monitornames[k] << "\t" << monitors[monitornames[k]] << endl;
}
}
file << fmg[] << endl;
file << umg[] << endl;
}
if (paraviewflag > 0){
cout << " Saving '" + fileout + "_rslv_[forcing,response].vtu' in '" + workdir + "'." << endl;
meshN Thgpv;
complex[int] fpv = fmg[], qpv = umg[];
if (paraviewflag > 1){
meshN Thgs = trunc(Thg, 1, split = paraviewflag);
fespace Xhs(Thgs, Pkf);
Xhs<complex> deff(fs) = deff(fmg);
fpv.resize(fs[].n);
fpv = fs[];
fespace XMhs(Thgs, Pk);
XMhs<complex> defu(us) = defu(umg);
qpv.resize(us[].n);
qpv = us[];
Thgpv = movemesh(Thgs, [coordinatetransform]);
}
else Thgpv = movemesh(Thg, [coordinatetransform]);
fespace Xhgpv(Thgpv, Pkf);
Xhgpv deff(fgr), deff(fgi);
fgr[] = fpv.re;
fgi[] = fpv.im;
savevtk(workdir + fileout + "_rslv_forcing.vtu", Thgpv, adaptf(fgr), adaptf(fgi), dataname = ParaviewDataNamefc, order = ParaviewOrderfc);
fespace XMhgpv(Thgpv, Pk);
XMhgpv defu(ugr), defu(ugi);
ugi[] = qpv.im;
ugr[] = qpv.re;
savevtk(workdir + fileout + "_rslv_response.vtu", Thgpv, adaptu(ugr), adaptu(ugi), dataname = ParaviewDataNamec, order = ParaviewOrderc);
}
}
}
}
}//EOM
macro savefold(foldfileout, statsfile, meshfile, alpha, beta, saveflag, monitorflag){
IFMACRO(getmonitors)
XMhg defu(tempu), defu(ubg), defu(umg), defu(umag);
tempu[](restu) = ub[];
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
tempu[](restu) = um[];
mpiAllReduce(tempu[], umg[], mpiCommWorld, mpiSUM);
tempu[](restu) = uma[];
mpiAllReduce(tempu[], umag[], mpiCommWorld, mpiSUM);
if(monitorflag) getmonitors;
ENDIFMACRO
if(mpirank == 0 && monitorflag){
cout << "\t";
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
cout << "alpha[" + paramnames[k] + "] = " + alpha[paramnames[k]] + ", ";
}
}
cout << "beta = " + beta;
if(paramnames[0] != "") cout << ", " << listparams(paramnames, params);
if(monitornames[0] != "") cout << ", " << listparams(monitornames, monitors);
cout << "." << endl;
}
if (mpirank == 0 && statsfile != "") {
cout << " Saving solution stats to '" + statsfile + ".fold.cont' in '" + workdir + "'." << endl;
string dummy = foldfileout;
{
ofstream file(workdir + statsfile + ".fold.cont", append);
file.precision(17);
file << foldfileout + ((dummy.rfind(".") > 0) ? "" : ".fold") << "\t" << meshfile;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << alpha[paramnames[k]];
}
}
file << "\t" << beta;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << params[paramnames[k]];
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << "\t" << monitors[monitornames[k]];
}
}
file << endl;
}
}
if (saveflag && foldfileout != ""){
IFMACRO(!getmonitors)
XMhg defu(tempu), defu(ubg), defu(umg), defu(umag);
tempu[](restu) = ub[];
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
tempu[](restu) = um[];
mpiAllReduce(tempu[], umg[], mpiCommWorld, mpiSUM);
tempu[](restu) = uma[];
mpiAllReduce(tempu[], umag[], mpiCommWorld, mpiSUM);
ENDIFMACRO
if(mpirank == 0){
cout << " Saving '" + foldfileout + ".fold' on '" + meshfile + "' in '" + workdir + "'." << endl;
{
ofstream file(workdir + foldfileout + ".fold", binary);
file.precision(17);
file << "mesh\t" << meshfile << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "alpha[" + paramnames[k] + "]\t" << alpha[paramnames[k]] << endl;
}
}
file << "beta\t" << beta << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << paramnames[k] << "\t" << params[paramnames[k]] << endl;
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << monitornames[k] << "\t" << monitors[monitornames[k]] << endl;
}
}
file << ubg[] << endl;
file << umg[] << endl;
file << umag[] << endl;
}
if (paraviewflag > 0){
cout << " Saving '" + foldfileout + "_fold_[base,dirmode,adjmode].vtu' in '" + workdir + "'." << endl;
meshN Thgpv;
real[int] qpv = ubg[], qmpv = umg[], qmapv = umag[];
if (paraviewflag > 1){
meshN Thgs = trunc(Thg, 1, split = paraviewflag);
fespace XMhs(Thgs, Pk);
XMhs defu(us) = defu(ubg);
qpv.resize(us[].n);
qmpv.resize(us[].n);
qmapv.resize(us[].n);
qpv = us[];
defu(us) = defu(umg);
qmpv = us[];
defu(us) = defu(umag);
qmapv = us[];
Thgpv = movemesh(Thgs, [coordinatetransform]);
}
else Thgpv = movemesh(Thg, [coordinatetransform]);
fespace XMhgpv(Thgpv, Pk);
XMhgpv defu(ugr);
ugr[] = qpv;
savevtk(workdir + foldfileout + "_fold_base.vtu", Thgpv, adaptu(ugr), dataname = ParaviewDataName, order = ParaviewOrder);
ugr[] = qmpv;
savevtk(workdir + foldfileout + "_fold_dirmode.vtu", Thgpv, adaptu(ugr), dataname = ParaviewDataName, order = ParaviewOrder);
ugr[] = qmapv;
savevtk(workdir + foldfileout + "_fold_adjmode.vtu", Thgpv, adaptu(ugr), dataname = ParaviewDataName, order = ParaviewOrder);
}
}
}
}//EOM
macro savehopf(hopffileout, statsfile, meshfile, sym, omega, alpha, beta, saveflag, monitorflag){
IFMACRO(getmonitors)
XMhg defu(tempu), defu(ubg);
tempu[](restu) = ub[].re;
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
XMhg<complex> defu(cplxu), defu(umg), defu(umag);
cplxu[](restu) = um[];
mpiAllReduce(cplxu[], umg[], mpiCommWorld, mpiSUM);
cplxu[](restu) = uma[];
mpiAllReduce(cplxu[], umag[], mpiCommWorld, mpiSUM);
if(monitorflag) getmonitors;
ENDIFMACRO
if(mpirank == 0 && monitorflag){
cout << "\tomega = " + omega;
if(sym.n > 0) cout << ", sym = " + listsym(sym);
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
cout << ", alpha[" + paramnames[k] + "] = " + alpha[paramnames[k]];
}
}
cout << ", beta = " + beta;
if(paramnames[0] != "" ) cout << ", " << listparams(paramnames, params);
if(monitornames[0] != "") cout << ", " << listparams(monitornames, monitors);
cout << "." << endl;
}
if(mpirank == 0 && statsfile != ""){
cout << " Saving solution stats to '" + statsfile + ".hopf.cont' in '" + workdir + "'." << endl;
string dummy = hopffileout;
{
ofstream file(workdir + statsfile + ".hopf.cont", append);
file.precision(17);
file << hopffileout + ((dummy.rfind(".") > 0) ? "" : ".hopf") << "\t" << meshfile << "\t" << omega;
if(sym.n > 0) file << "\t" << listsym(sym);
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << alpha[paramnames[k]];
}
}
file << "\t" << beta;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << params[paramnames[k]];
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << "\t" << monitors[monitornames[k]];
}
}
file << endl;
}
}
if(saveflag && hopffileout != ""){
IFMACRO(!getmonitors)
XMhg defu(tempu), defu(ubg);
tempu[](restu) = ub[].re;
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
XMhg<complex> defu(cplxu), defu(umg), defu(umag);
cplxu[](restu) = um[];
mpiAllReduce(cplxu[], umg[], mpiCommWorld, mpiSUM);
cplxu[](restu) = uma[];
mpiAllReduce(cplxu[], umag[], mpiCommWorld, mpiSUM);
ENDIFMACRO
if(mpirank == 0){
cout << " Saving '" + hopffileout + ".hopf' on '" + meshfile + "' in '" + workdir + "'." << endl;
{
ofstream file(workdir + hopffileout + ".hopf", binary);
file.precision(17);
file << "mesh\t" << meshfile << endl;
file << "omega\t" << omega << endl;
if(sym.n > 0) file << "sym\t" << listsym(sym) << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "alpha[" + paramnames[k] + "]\t" << alpha[paramnames[k]] << endl;
}
}
file << "beta\t" << beta << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << paramnames[k] << "\t" << params[paramnames[k]] << endl;
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << monitornames[k] << "\t" << monitors[monitornames[k]] << endl;
}
}
file << ubg[] << endl;
file << umg[] << endl;
file << umag[] << endl;
}
if (paraviewflag > 0){
cout << " Saving '" + hopffileout + "_hopf_[base,dirmode,adjmode].vtu' in '" + workdir + "'." << endl;
meshN Thgpv;
real[int] qpv = ubg[];
complex[int] qmpv = umg[], qmapv = umag[];
if (paraviewflag > 1){
meshN Thgs = trunc(Thg, 1, split = paraviewflag);
fespace XMhs(Thgs, Pk);
XMhs defu(us) = defu(ubg);
XMhs<complex> defu(ums) = defu(umg);
qpv.resize(us[].n);
qmpv.resize(ums[].n);
qmapv.resize(ums[].n);
qpv = us[];
qmpv = ums[];
defu(ums) = defu(umag);
qmapv = ums[];
Thgpv = movemesh(Thgs, [coordinatetransform]);
}
else Thgpv = movemesh(Thg, [coordinatetransform]);
fespace XMhgpv(Thgpv, Pk);
XMhgpv defu(ugr), defu(ugi);
ugr[] = qpv;
savevtk(workdir + hopffileout + "_hopf_base.vtu", Thgpv, adaptu(ugr), dataname = ParaviewDataName, order = ParaviewOrder);
ugr[] = qmpv.re;
ugi[] = qmpv.im;
savevtk(workdir + hopffileout + "_hopf_dirmode.vtu", Thgpv, adaptu(ugr), adaptu(ugi), dataname = ParaviewDataNamec, order = ParaviewOrderc);
ugr[] = qmapv.re;
ugi[] = qmapv.im;
savevtk(workdir + hopffileout + "_hopf_adjmode.vtu", Thgpv, adaptu(ugr), adaptu(ugi), dataname = ParaviewDataNamec, order = ParaviewOrderc);
}
}
}
}//EOM
macro savetdls(tdlsfileout, statsfile, meshfile, basefile, ICfile, sym, time, saveflag){
if(mpirank == 0){
cout << "\ttime = " + time;
if(sym.n > 0) cout << ", sym = " + listsym(sym);
if(paramnames[0] != "") cout << ", " << listparams(paramnames, params);
if(monitornames[0] != "") cout << ", " << listparams(monitornames, monitors);
cout << "." << endl;
}
if(mpirank == 0 && statsfile != "") {
cout << " Saving solution stats to '" + statsfile + ".tdls.cont' in '" + workdir + "'." << endl;
string dummy = tdlsfileout;
{
ofstream file(workdir + statsfile + ".tdls.cont", append);
file.precision(17);
file << tdlsfileout + ((dummy.rfind(".") > 0) ? "" : ".tdls") << "\t" << meshfile << "\t" << basefile << "\t" << ICfile << "\t" << time;
if(sym.n > 0) file << "\t" << listsym(sym);
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << params[paramnames[k]];
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << "\t" << monitors[monitornames[k]];
}
}
file << endl;
}
}
if(saveflag && tdlsfileout != ""){
XMhg<PetscScalar> defu(tempu), defu(umg);
tempu[](restu) = um[];
mpiAllReduce(tempu[], umg[], mpiCommWorld, mpiSUM);
if(mpirank == 0){
cout << " Saving '" + tdlsfileout + ".tdls' on '" + meshfile + "' in '" + workdir + "'." << endl;
{
ofstream file(workdir + tdlsfileout + ".tdls", binary);
file.precision(17);
file << "mesh\t" << meshfile << endl;
file << "base\t" << basefile << endl;
file << "init\t" << ICfile << endl;
file << "time\t" << time << endl;
if(sym.n > 0) file << "sym\t" << listsym(sym) << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << paramnames[k] << "\t" << params[paramnames[k]] << endl;
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << monitornames[k] << "\t" << monitors[monitornames[k]] << endl;
}
}
file << umg[] << endl;
}
if (paraviewflag > 0){
cout << " Saving '" + tdlsfileout + "_tdls.vtu' in '" + workdir + "'." << endl;
meshN Thgpv;
complex[int] qpv = umg[];
if (paraviewflag > 1){
meshN Thgs = trunc(Thg, 1, split = paraviewflag);
fespace XMhs(Thgs, Pk);
XMhs<complex> defu(us) = defu(umg);
qpv.resize(us[].n);
qpv = us[];
Thgpv = movemesh(Thgs, [coordinatetransform]);
}
else Thgpv = movemesh(Thg, [coordinatetransform]);
fespace XMhgpv(Thgpv, Pk);
XMhgpv defu(ugr), defu(ugi);
ugr[] = qpv.re;
ugi[] = qpv.im;
savevtk(workdir + tdlsfileout + "_tdls.vtu", Thgpv, adaptu(ugr), adaptu(ugi), dataname = ParaviewDataNamec, order = ParaviewOrderc);
}
}
}
}//EOM
macro savetdns(tdnsfileout, statsfile, meshfile, ICfile, time, saveflag, monitorflag){
IFMACRO(getmonitors)
XMhg defu(tempu), defu(ubg), defu(umg), defu(umag);
tempu[](restu) = ub[];
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
if(monitorflag) getmonitors;
ENDIFMACRO
if(mpirank == 0 && monitorflag){
cout << "\ttime = " + time;
if(paramnames[0] != "") cout << ", " << listparams(paramnames, params);
if(monitornames[0] != "") cout << ", " << listparams(monitornames, monitors);
cout << "." << endl;
}
if(mpirank == 0 && statsfile != "") {
cout << " Saving solution stats to '" + statsfile + ".tdns.cont' in '" + workdir + "'." << endl;
string dummy = tdnsfileout;
{
ofstream file(workdir + statsfile + ".tdns.cont", append);
file.precision(17);
file << tdnsfileout + ((dummy.rfind(".") > 0) ? "" : ".tdns") << "\t" << meshfile << "\t" << ICfile << "\t" << time;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << "\t" << params[paramnames[k]];
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << "\t" << monitors[monitornames[k]];
}
}
file << endl;
}
}
if(saveflag && tdnsfileout != ""){
IFMACRO(!getmonitors)
XMhg defu(tempu), defu(ubg), defu(umg), defu(umag);
tempu[](restu) = ub[];
mpiAllReduce(tempu[], ubg[], mpiCommWorld, mpiSUM);
ENDIFMACRO
if(mpirank == 0){
cout << " Saving '" + tdnsfileout + ".tdns' on '" + meshfile + "' in '" + workdir + "'." << endl;
{
ofstream file(workdir + tdnsfileout + ".tdns", binary);
file.precision(17);
file << "mesh\t" << meshfile << endl;
file << "init\t" << ICfile << endl;
file << "time\t" << time << endl;
if(paramnames[0] != ""){
for (int k = 0; k < paramnames.n; ++k){
file << paramnames[k] << "\t" << params[paramnames[k]] << endl;
}
}
if(monitornames[0] != ""){
for (int k = 0; k < monitornames.n; ++k){
file << monitornames[k] << "\t" << monitors[monitornames[k]] << endl;
}
}
file << ubg[] << endl;
}
if (paraviewflag > 0){
cout << " Saving '" + tdnsfileout + "_tdns.vtu' in '" + workdir + "'." << endl;
meshN Thgpv;
real[int] qpv = ubg[];
if (paraviewflag > 1){
meshN Thgs = trunc(Thg, 1, split = paraviewflag);
fespace XMhs(Thgs, Pk);